RNA–Protein interactions for RNA: ENST00000519684.5

HMGB4-203, Transcript of high mobility group box 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB4, Length 2,343 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-203ENST00000519684 MAP3K1Q13233 1512 aa12.73□□□□□ -0.37
HMGB4-203ENST00000519684 TIAM1Q13009 1591 aa12.72□□□□□ -0.37
HMGB4-203ENST00000519684 WDR62O43379 1518 aa12.72□□□□□ -0.37
HMGB4-203ENST00000519684 HNRNPUL2Q1KMD3 747 aaKnown RBP12.72□□□□□ -0.37
HMGB4-203ENST00000519684 KANK4Q5T7N3 995 aaPredicted RBP12.71□□□□□ -0.37
HMGB4-203ENST00000519684 PCF11O94913 1555 aaKnown RBP12.7□□□□□ -0.38
HMGB4-203ENST00000519684 CFAP43Q8NDM7 1665 aa12.7□□□□□ -0.38
HMGB4-203ENST00000519684 ERCC6Q03468 1493 aa12.69□□□□□ -0.38
HMGB4-203ENST00000519684 IFT140Q96RY7 1462 aa12.69□□□□□ -0.38
HMGB4-203ENST00000519684 FHOD3Q2V2M9 1422 aa12.68□□□□□ -0.38
HMGB4-203ENST00000519684 P3H3Q8IVL6 736 aa12.68□□□□□ -0.38
HMGB4-203ENST00000519684 FYCO1Q9BQS8 1478 aa12.67□□□□□ -0.38
HMGB4-203ENST00000519684 ADAMTS12P58397 1594 aa12.67□□□□□ -0.38
HMGB4-203ENST00000519684 AQRO60306 1485 aaKnown RBP eCLIP12.66□□□□□ -0.38
HMGB4-203ENST00000519684 GRIN2BQ13224 1484 aa12.66□□□□□ -0.38
HMGB4-203ENST00000519684 RRBP1Q9P2E9 1410 aaKnown RBP12.66□□□□□ -0.38
HMGB4-203ENST00000519684 SAMD9Q5K651 1589 aa12.66□□□□□ -0.38
HMGB4-203ENST00000519684 FMN1Q68DA7 1419 aa12.65□□□□□ -0.38
HMGB4-203ENST00000519684 CASKIN1Q8WXD9 1431 aa12.64□□□□□ -0.39
HMGB4-203ENST00000519684 LRRC9Q6ZRR7 1453 aa12.64□□□□□ -0.39
HMGB4-203ENST00000519684 ATP1B4Q9UN42 357 aaPredicted RBP12.63□□□□□ -0.39
HMGB4-203ENST00000519684 CCNB3Q8WWL7 1395 aa12.62□□□□□ -0.39
HMGB4-203ENST00000519684 THOC2Q8NI27 1593 aaKnown RBP12.62□□□□□ -0.39
HMGB4-203ENST00000519684 ZNF608Q9ULD9 1512 aaPredicted RBP12.6□□□□□ -0.39
HMGB4-203ENST00000519684 IQGAP2Q13576 1575 aa12.6□□□□□ -0.39
HMGB4-203ENST00000519684 EIF4G3O43432 1585 aaKnown RBP12.59□□□□□ -0.39
HMGB4-203ENST00000519684 SNAPC4Q5SXM2 1469 aa12.58□□□□□ -0.4
HMGB4-203ENST00000519684 PHLDB1Q86UU1 1377 aa12.53□□□□□ -0.4
HMGB4-203ENST00000519684 LRRIQ1Q96JM4 1722 aa12.52□□□□□ -0.4
HMGB4-203ENST00000519684 MAGI1Q96QZ7 1491 aaPredicted RBP12.52□□□□□ -0.41
HMGB4-203ENST00000519684 HECW1Q76N89 1606 aa12.52□□□□□ -0.41
HMGB4-203ENST00000519684 UGGT2Q9NYU1 1516 aa12.51□□□□□ -0.41
HMGB4-203ENST00000519684 GRIN2AQ12879 1464 aa12.51□□□□□ -0.41
HMGB4-203ENST00000519684 MTUS2Q5JR59 1369 aa12.51□□□□□ -0.41
HMGB4-203ENST00000519684 ITGAEP38570 1179 aa12.51□□□□□ -0.41
HMGB4-203ENST00000519684 CCDC18Q5T9S5 1454 aa12.5□□□□□ -0.41
HMGB4-203ENST00000519684 KIAA0586Q9BVV6 1533 aa12.5□□□□□ -0.41
HMGB4-203ENST00000519684 CLSPNQ9HAW4 1339 aa12.5□□□□□ -0.41
HMGB4-203ENST00000519684 EHBP1L1Q8N3D4 1523 aa12.49□□□□□ -0.41
HMGB4-203ENST00000519684 SUPT6HQ7KZ85 1726 aaKnown RBP12.48□□□□□ -0.41
HMGB4-203ENST00000519684 FAM50AQ14320 339 aaKnown RBP12.48□□□□□ -0.41
HMGB4-203ENST00000519684 DHX57Q6P158 1386 aaKnown RBP12.47□□□□□ -0.41
HMGB4-203ENST00000519684 SYNJ2O15056 1496 aa12.47□□□□□ -0.41
HMGB4-203ENST00000519684 KIAA0556O60303 1618 aa12.46□□□□□ -0.41
HMGB4-203ENST00000519684 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.46□□□□□ -0.42
HMGB4-203ENST00000519684 CHMP7Q8WUX9 453 aaPredicted RBP12.45□□□□□ -0.42
HMGB4-203ENST00000519684 FGD6Q6ZV73 1430 aa12.44□□□□□ -0.42
HMGB4-203ENST00000519684 NCOA2Q15596 1464 aa12.43□□□□□ -0.42
HMGB4-203ENST00000519684 SETD5Q9C0A6 1442 aa12.43□□□□□ -0.42
HMGB4-203ENST00000519684 CEP170Q5SW79 1584 aa12.43□□□□□ -0.42
HMGB4-203ENST00000519684 RAB3GAP2Q9H2M9 1393 aa12.42□□□□□ -0.42
HMGB4-203ENST00000519684 EPRSP07814 1512 aaKnown RBP12.42□□□□□ -0.42
HMGB4-203ENST00000519684 DISP1Q96F81 1524 aa12.42□□□□□ -0.42
HMGB4-203ENST00000519684 MYOM3Q5VTT5 1437 aa12.41□□□□□ -0.42
HMGB4-203ENST00000519684 FBLN2P98095 1184 aa12.4□□□□□ -0.42
HMGB4-203ENST00000519684 RAPGEF6Q8TEU7 1601 aa12.39□□□□□ -0.43
HMGB4-203ENST00000519684 MAGI3Q5TCQ9 1506 aa12.39□□□□□ -0.43
HMGB4-203ENST00000519684 ZNF316A6NFI3 1004 aaPredicted RBP12.39□□□□□ -0.43
HMGB4-203ENST00000519684 CDK13Q14004 1512 aaKnown RBP12.38□□□□□ -0.43
HMGB4-203ENST00000519684 NUP160Q12769 1436 aa12.38□□□□□ -0.43
HMGB4-203ENST00000519684 ARHGEF11O15085 1522 aa12.38□□□□□ -0.43
HMGB4-203ENST00000519684 PTPN23Q9H3S7 1636 aa12.37□□□□□ -0.43
HMGB4-203ENST00000519684 CARMIL2Q6F5E8 1435 aa12.36□□□□□ -0.43
HMGB4-203ENST00000519684 DIEXFQ68CQ4 756 aaKnown RBP12.36□□□□□ -0.43
HMGB4-203ENST00000519684 NUP153P49790 1475 aaKnown RBP12.33□□□□□ -0.44
HMGB4-203ENST00000519684 ARID3CA6NKF2 412 aa12.32□□□□□ -0.44
HMGB4-203ENST00000519684 TCOF1Q13428 1488 aaKnown RBP12.32□□□□□ -0.44
HMGB4-203ENST00000519684 MAPKBP1O60336 1514 aa12.32□□□□□ -0.44
HMGB4-203ENST00000519684 JPH4Q96JJ6 628 aa12.31□□□□□ -0.44
HMGB4-203ENST00000519684 CDK11AQ9UQ88 783 aaPredicted RBP12.31□□□□□ -0.44
HMGB4-203ENST00000519684 MIA2Q96PC5 1412 aa12.31□□□□□ -0.44
HMGB4-203ENST00000519684 HFM1A2PYH4 1435 aa12.3□□□□□ -0.44
HMGB4-203ENST00000519684 CHD1O14646 1710 aa12.29□□□□□ -0.44
HMGB4-203ENST00000519684 PTPRKQ15262 1439 aa12.28□□□□□ -0.44
HMGB4-203ENST00000519684 PLB1Q6P1J6 1458 aa12.27□□□□□ -0.44
HMGB4-203ENST00000519684 GCC2Q8IWJ2 1684 aa12.26□□□□□ -0.45
HMGB4-203ENST00000519684 TROQ12816 1431 aaPredicted RBP12.25□□□□□ -0.45
HMGB4-203ENST00000519684 ITSN2Q9NZM3 1697 aa12.25□□□□□ -0.45
HMGB4-203ENST00000519684 NAIPQ13075 1403 aa12.25□□□□□ -0.45
HMGB4-203ENST00000519684 ADCY10Q96PN6 1610 aa12.25□□□□□ -0.45
HMGB4-203ENST00000519684 ABCA8O94911 1581 aa12.24□□□□□ -0.45
HMGB4-203ENST00000519684 AKNAQ7Z591 1439 aa12.24□□□□□ -0.45
HMGB4-203ENST00000519684 UACAQ9BZF9 1416 aa12.24□□□□□ -0.45
HMGB4-203ENST00000519684 PRG4Q92954 1404 aaPredicted RBP12.22□□□□□ -0.45
HMGB4-203ENST00000519684 DNMT1P26358 1616 aaKnown RBP12.21□□□□□ -0.45
HMGB4-203ENST00000519684 NEUROD1Q13562 356 aa12.2□□□□□ -0.46
HMGB4-203ENST00000519684 CHIC2Q9UKJ5 165 aa12.2□□□□□ -0.46
HMGB4-203ENST00000519684 TIMELESSQ9UNS1 1208 aa12.2□□□□□ -0.46
HMGB4-203ENST00000519684 KIF14Q15058 1648 aa12.19□□□□□ -0.46
HMGB4-203ENST00000519684 SHROOM2Q13796 1616 aa12.19□□□□□ -0.46
HMGB4-203ENST00000519684 DAPK1P53355 1430 aa12.19□□□□□ -0.46
HMGB4-203ENST00000519684 RRP7BPQ9NSQ0 103 aa12.19□□□□□ -0.46
HMGB4-203ENST00000519684 PTPRGP23470 1445 aa12.18□□□□□ -0.46
HMGB4-203ENST00000519684 SIN3AQ96ST3 1273 aa12.17□□□□□ -0.46
HMGB4-203ENST00000519684 PLEKHD1A6NEE1 506 aa12.17□□□□□ -0.46
HMGB4-203ENST00000519684 CAMSAP2Q08AD1 1489 aa12.17□□□□□ -0.46
HMGB4-203ENST00000519684 ATP10BO94823 1461 aa12.16□□□□□ -0.46
HMGB4-203ENST00000519684 ROCK1Q13464 1354 aa12.16□□□□□ -0.46
HMGB4-203ENST00000519684 ACIN1Q9UKV3 1341 aaKnown RBP12.16□□□□□ -0.46
HMGB4-203ENST00000519684 CFDP1Q9UEE9 299 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms