RNA–Protein interactions for RNA: ENST00000518371.2

MRPS28-203, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 3

Gene MRPS28, Length 783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-203ENST00000518371 PCDH10Q9P2E7 1040 aa11.92□□□□□ -0.5
MRPS28-203ENST00000518371 PELP1Q8IZL8 1130 aaKnown RBP11.89□□□□□ -0.51
MRPS28-203ENST00000518371 PHF12Q96QT6 1004 aa11.87□□□□□ -0.51
MRPS28-203ENST00000518371 PAK3O75914 559 aaPredicted RBP11.86□□□□□ -0.51
MRPS28-203ENST00000518371 STAG3Q9UJ98 1225 aa11.86□□□□□ -0.51
MRPS28-203ENST00000518371 SCRIBQ14160 1630 aa11.78□□□□□ -0.52
MRPS28-203ENST00000518371 UNC13AQ9UPW8 1703 aa11.77□□□□□ -0.52
MRPS28-203ENST00000518371 POTEJP0CG39 1038 aa11.77□□□□□ -0.53
MRPS28-203ENST00000518371 METRNQ9UJH8 293 aa11.77□□□□□ -0.53
MRPS28-203ENST00000518371 BICRAQ9NZM4 1560 aa11.75□□□□□ -0.53
MRPS28-203ENST00000518371 C7P10643 843 aa11.75□□□□□ -0.53
MRPS28-203ENST00000518371 ASTLQ6HA08 431 aaPredicted RBP11.75□□□□□ -0.53
MRPS28-203ENST00000518371 MAMSTRQ6ZN01 415 aa11.74□□□□□ -0.53
MRPS28-203ENST00000518371 SLC39A7Q92504 469 aa11.74□□□□□ -0.53
MRPS28-203ENST00000518371 NPM1P06748 294 aaKnown RBP eCLIP11.73□□□□□ -0.53
MRPS28-203ENST00000518371 ATMINO43313 823 aaPredicted RBP11.72□□□□□ -0.53
MRPS28-203ENST00000518371 SPDYE4A6NLX3 237 aa11.71□□□□□ -0.53
MRPS28-203ENST00000518371 LCE2DQ5TA82 110 aaPredicted RBP11.71□□□□□ -0.53
MRPS28-203ENST00000518371 FAM163AQ96GL9 167 aaPredicted RBP11.71□□□□□ -0.53
MRPS28-203ENST00000518371 MS4A3Q96HJ5 214 aa11.69□□□□□ -0.54
MRPS28-203ENST00000518371 MNX1P50219 401 aaPredicted RBP11.68□□□□□ -0.54
MRPS28-203ENST00000518371 SCUBE2Q9NQ36 999 aa11.63□□□□□ -0.55
MRPS28-203ENST00000518371 SHROOM4Q9ULL8 1493 aa11.63□□□□□ -0.55
MRPS28-203ENST00000518371 ATN1P54259 1190 aaPredicted RBP11.58□□□□□ -0.56
MRPS28-203ENST00000518371 POTEFA5A3E0 1075 aa11.52□□□□□ -0.57
MRPS28-203ENST00000518371 TSPYL2Q9H2G4 693 aaPredicted RBP11.5□□□□□ -0.57
MRPS28-203ENST00000518371 CDAN1Q8IWY9 1227 aa11.48□□□□□ -0.57
MRPS28-203ENST00000518371 PROM2Q8N271 834 aa11.48□□□□□ -0.57
MRPS28-203ENST00000518371 EIF4G1Q04637 1599 aaKnown RBP11.47□□□□□ -0.57
MRPS28-203ENST00000518371 CCDC61Q9Y6R9 512 aa11.47□□□□□ -0.57
MRPS28-203ENST00000518371 KIF12Q96FN5 646 aa11.46□□□□□ -0.57
MRPS28-203ENST00000518371 BMP2KQ9NSY1 1161 aaPredicted RBP11.45□□□□□ -0.58
MRPS28-203ENST00000518371 CC2D2AQ9P2K1 1620 aa11.43□□□□□ -0.58
MRPS28-203ENST00000518371 CECR2Q9BXF3 1484 aa11.41□□□□□ -0.58
MRPS28-203ENST00000518371 TRPC6Q9Y210 931 aa11.41□□□□□ -0.58
MRPS28-203ENST00000518371 TIE1P35590 1138 aa11.39□□□□□ -0.59
MRPS28-203ENST00000518371 COLQQ9Y215 455 aaPredicted RBP11.38□□□□□ -0.59
MRPS28-203ENST00000518371 SEC24BO95487 1268 aa11.36□□□□□ -0.59
MRPS28-203ENST00000518371 MAP3K13O43283 966 aa11.35□□□□□ -0.59
MRPS28-203ENST00000518371 FKBP8Q14318 412 aa11.32□□□□□ -0.6
MRPS28-203ENST00000518371 TTLL13PA6NNM8 815 aa11.31□□□□□ -0.6
MRPS28-203ENST00000518371 ST18O60284 1047 aa11.3□□□□□ -0.6
MRPS28-203ENST00000518371 BAZ1AQ9NRL2 1556 aaPredicted RBP11.27□□□□□ -0.61
MRPS28-203ENST00000518371 IER5LQ5T953 404 aa11.26□□□□□ -0.61
MRPS28-203ENST00000518371 SLAIN1Q8ND83 568 aa11.26□□□□□ -0.61
MRPS28-203ENST00000518371 SMARCA4P51532 1647 aa11.24□□□□□ -0.61
MRPS28-203ENST00000518371 MMRN1Q13201 1228 aa11.24□□□□□ -0.61
MRPS28-203ENST00000518371 NCAPD3P42695 1498 aa11.24□□□□□ -0.61
MRPS28-203ENST00000518371 ATAD2BQ9ULI0 1458 aa11.24□□□□□ -0.61
MRPS28-203ENST00000518371 TRIM35Q9UPQ4 493 aa11.23□□□□□ -0.61
MRPS28-203ENST00000518371 SPNS2Q8IVW8 549 aa11.22□□□□□ -0.61
MRPS28-203ENST00000518371 RASEFQ8IZ41 740 aa11.22□□□□□ -0.61
MRPS28-203ENST00000518371 MROH2BQ7Z745 1585 aa11.21□□□□□ -0.61
MRPS28-203ENST00000518371 SMARCA2P51531 1590 aa11.2□□□□□ -0.62
MRPS28-203ENST00000518371 SGIP1Q9BQI5 828 aa11.17□□□□□ -0.62
MRPS28-203ENST00000518371 PLEKHG5O94827 1062 aa11.16□□□□□ -0.62
MRPS28-203ENST00000518371 BAZ1BQ9UIG0 1483 aaKnown RBP11.16□□□□□ -0.62
MRPS28-203ENST00000518371 MIER1Q8N108 512 aa11.14□□□□□ -0.63
MRPS28-203ENST00000518371 PCDHB13Q9Y5F0 798 aa11.14□□□□□ -0.63
MRPS28-203ENST00000518371 TMEM121BQ9BXQ6 578 aaPredicted RBP11.13□□□□□ -0.63
MRPS28-203ENST00000518371 HMGXB3Q12766 1538 aa11.12□□□□□ -0.63
MRPS28-203ENST00000518371 PEG3Q9GZU2 1588 aa11.11□□□□□ -0.63
MRPS28-203ENST00000518371 RSF1Q96T23 1441 aaPredicted RBP11.11□□□□□ -0.63
MRPS28-203ENST00000518371 PLCG2P16885 1265 aa11.1□□□□□ -0.63
MRPS28-203ENST00000518371 TMEM106CQ9BVX2 250 aa11.07□□□□□ -0.64
MRPS28-203ENST00000518371 WIZO95785 1651 aa11.06□□□□□ -0.64
MRPS28-203ENST00000518371 SNPHO15079 494 aa11.06□□□□□ -0.64
MRPS28-203ENST00000518371 IFNL1Q8IU54 200 aa11.06□□□□□ -0.64
MRPS28-203ENST00000518371 PLCD3Q8N3E9 789 aa11.06□□□□□ -0.64
MRPS28-203ENST00000518371 IRX5P78411 483 aaPredicted RBP11.05□□□□□ -0.64
MRPS28-203ENST00000518371 MARVELD3Q96A59 401 aa11.04□□□□□ -0.64
MRPS28-203ENST00000518371 OCEL1Q9H607 264 aa11□□□□□ -0.65
MRPS28-203ENST00000518371 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.99□□□□□ -0.65
MRPS28-203ENST00000518371 FBXO3Q9UK99 471 aa10.98□□□□□ -0.65
MRPS28-203ENST00000518371 NUBP1P53384 320 aa10.97□□□□□ -0.65
MRPS28-203ENST00000518371 ERCC6Q03468 1493 aa10.97□□□□□ -0.65
MRPS28-203ENST00000518371 NESP48681 1621 aa10.97□□□□□ -0.65
MRPS28-203ENST00000518371 SUPT5HO00267 1087 aaKnown RBP10.96□□□□□ -0.65
MRPS28-203ENST00000518371 TOP2AP11388 1531 aaKnown RBP10.95□□□□□ -0.66
MRPS28-203ENST00000518371 CADPSQ9ULU8 1353 aa10.94□□□□□ -0.66
MRPS28-203ENST00000518371 ZBTB47Q9UFB7 747 aaPredicted RBP10.91□□□□□ -0.66
MRPS28-203ENST00000518371 PDS5BQ9NTI5 1447 aa10.91□□□□□ -0.66
MRPS28-203ENST00000518371 EMP3P54852 163 aa10.9□□□□□ -0.66
MRPS28-203ENST00000518371 LAMC3Q9Y6N6 1575 aa10.9□□□□□ -0.67
MRPS28-203ENST00000518371 VASPP50552 380 aaPredicted RBP10.89□□□□□ -0.67
MRPS28-203ENST00000518371 FAM212AQ96EL1 285 aa10.89□□□□□ -0.67
MRPS28-203ENST00000518371 KRTAP3-3Q9BYR6 98 aa10.89□□□□□ -0.67
MRPS28-203ENST00000518371 KRTAP3-2Q9BYR7 98 aa10.89□□□□□ -0.67
MRPS28-203ENST00000518371 CCDC88BA6NC98 1476 aa10.87□□□□□ -0.67
MRPS28-203ENST00000518371 POTEB3A0JP26 581 aa10.86□□□□□ -0.67
MRPS28-203ENST00000518371 POTEBQ6S5H4 581 aa10.86□□□□□ -0.67
MRPS28-203ENST00000518371 HS3ST6Q96QI5 342 aa10.85□□□□□ -0.67
MRPS28-203ENST00000518371 CFTRP13569 1480 aa10.83□□□□□ -0.68
MRPS28-203ENST00000518371 FAM205CA6NFA0 338 aa10.83□□□□□ -0.68
MRPS28-203ENST00000518371 C3orf67Q6ZVT6 689 aa10.8□□□□□ -0.68
MRPS28-203ENST00000518371 CUX2O14529 1486 aa10.8□□□□□ -0.68
MRPS28-203ENST00000518371 FANCD2Q9BXW9 1451 aa10.8□□□□□ -0.68
MRPS28-203ENST00000518371 PDCD7Q8N8D1 485 aaKnown RBP10.78□□□□□ -0.68
MRPS28-203ENST00000518371 PCDHB8Q9UN66 801 aa10.78□□□□□ -0.68
MRPS28-203ENST00000518371 CEP164Q9UPV0 1460 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms