RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ESF1Q9H501 851 aaKnown RBP17.85■□□□□ 0.45
TCOF1-213ENST00000514442 KCNH8Q96L42 1107 aa17.85■□□□□ 0.45
TCOF1-213ENST00000514442 CCDC88BA6NC98 1476 aa17.84■□□□□ 0.45
TCOF1-213ENST00000514442 KDM2AQ9Y2K7 1162 aa17.84■□□□□ 0.45
TCOF1-213ENST00000514442 STAG3Q9UJ98 1225 aa17.83■□□□□ 0.44
TCOF1-213ENST00000514442 ABCC8Q09428 1581 aa17.82■□□□□ 0.44
TCOF1-213ENST00000514442 SLC24A1O60721 1099 aa17.81■□□□□ 0.44
TCOF1-213ENST00000514442 ZBTB47Q9UFB7 747 aaPredicted RBP17.81■□□□□ 0.44
TCOF1-213ENST00000514442 DEKP35659 375 aaKnown RBP17.8■□□□□ 0.44
TCOF1-213ENST00000514442 ERCC6Q03468 1493 aa17.79■□□□□ 0.44
TCOF1-213ENST00000514442 CANXP27824 592 aaKnown RBP17.79■□□□□ 0.44
TCOF1-213ENST00000514442 FAM9BQ8IZU0 186 aa17.77■□□□□ 0.44
TCOF1-213ENST00000514442 PLEKHD1A6NEE1 506 aa17.76■□□□□ 0.43
TCOF1-213ENST00000514442 HNRNPUQ00839 825 aaKnown RBP eCLIP17.76■□□□□ 0.43
TCOF1-213ENST00000514442 CUX2O14529 1486 aa17.76■□□□□ 0.43
TCOF1-213ENST00000514442 NPM2Q86SE8 214 aaKnown RBP17.75■□□□□ 0.43
TCOF1-213ENST00000514442 WIZO95785 1651 aa17.75■□□□□ 0.43
TCOF1-213ENST00000514442 SENP3Q9H4L4 574 aaPredicted RBP17.73■□□□□ 0.43
TCOF1-213ENST00000514442 SALL2Q9Y467 1007 aaPredicted RBP17.72■□□□□ 0.43
TCOF1-213ENST00000514442 NEFMP07197 916 aa17.72■□□□□ 0.43
TCOF1-213ENST00000514442 CARMIL1Q5VZK9 1371 aa17.7■□□□□ 0.42
TCOF1-213ENST00000514442 IRX6P78412 446 aaPredicted RBP17.68■□□□□ 0.42
TCOF1-213ENST00000514442 CFDP1Q9UEE9 299 aaPredicted RBP17.68■□□□□ 0.42
TCOF1-213ENST00000514442 SMARCA2P51531 1590 aa17.66■□□□□ 0.42
TCOF1-213ENST00000514442 EIF4G1Q04637 1599 aaKnown RBP17.66■□□□□ 0.42
TCOF1-213ENST00000514442 NOP58Q9Y2X3 529 aaKnown RBP17.66■□□□□ 0.42
TCOF1-213ENST00000514442 RTN4Q9NQC3 1192 aaKnown RBP17.63■□□□□ 0.41
TCOF1-213ENST00000514442 RGL3Q3MIN7 710 aa17.62■□□□□ 0.41
TCOF1-213ENST00000514442 TOP2AP11388 1531 aaKnown RBP17.61■□□□□ 0.41
TCOF1-213ENST00000514442 PRKCSHP14314 528 aaPredicted RBP17.61■□□□□ 0.41
TCOF1-213ENST00000514442 TMC1Q8TDI8 760 aa17.61■□□□□ 0.41
TCOF1-213ENST00000514442 MRS2Q9HD23 443 aa17.6■□□□□ 0.41
TCOF1-213ENST00000514442 EIF4G2P78344 907 aaKnown RBP eCLIP17.59■□□□□ 0.41
TCOF1-213ENST00000514442 SIN3AQ96ST3 1273 aa17.59■□□□□ 0.41
TCOF1-213ENST00000514442 CCDC136Q96JN2 1154 aa17.58■□□□□ 0.4
TCOF1-213ENST00000514442 ERICH6BQ5W0A0 696 aa17.56■□□□□ 0.4
TCOF1-213ENST00000514442 TDRD9Q8NDG6 1382 aaKnown RBP17.55■□□□□ 0.4
TCOF1-213ENST00000514442 PPP4R2Q9NY27 417 aa17.53■□□□□ 0.4
TCOF1-213ENST00000514442 FHAD1B1AJZ9 1412 aa17.53■□□□□ 0.4
TCOF1-213ENST00000514442 KANK4Q5T7N3 995 aaPredicted RBP17.53■□□□□ 0.4
TCOF1-213ENST00000514442 CCNB3Q8WWL7 1395 aa17.53■□□□□ 0.4
TCOF1-213ENST00000514442 SENP3-EIF4A1A0A087X0R7 540 aa17.5■□□□□ 0.39
TCOF1-213ENST00000514442 VPS8Q8N3P4 1428 aa17.49■□□□□ 0.39
TCOF1-213ENST00000514442 ATAD2BQ9ULI0 1458 aa17.49■□□□□ 0.39
TCOF1-213ENST00000514442 SMARCA4P51532 1647 aa17.48■□□□□ 0.39
TCOF1-213ENST00000514442 PDS5BQ9NTI5 1447 aa17.48■□□□□ 0.39
TCOF1-213ENST00000514442 WDR43Q15061 677 aaKnown RBP eCLIP17.48■□□□□ 0.397e-6■■■■■ 27.3
TCOF1-213ENST00000514442 PPM1GO15355 546 aaPredicted RBP17.45■□□□□ 0.38
TCOF1-213ENST00000514442 CADPSQ9ULU8 1353 aa17.44■□□□□ 0.38
TCOF1-213ENST00000514442 PPP1R15AO75807 674 aaPredicted RBP17.43■□□□□ 0.38
TCOF1-213ENST00000514442 FANCIQ9NVI1 1328 aa17.42■□□□□ 0.38
TCOF1-213ENST00000514442 CARD11Q9BXL7 1154 aa17.41■□□□□ 0.38
TCOF1-213ENST00000514442 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.41■□□□□ 0.38
TCOF1-213ENST00000514442 DDRGK1Q96HY6 314 aa17.4■□□□□ 0.38
TCOF1-213ENST00000514442 PLEKHG5O94827 1062 aa17.4■□□□□ 0.38
TCOF1-213ENST00000514442 ARID4BQ4LE39 1312 aaPredicted RBP17.39■□□□□ 0.37
TCOF1-213ENST00000514442 CCER2I3L3R5 266 aa17.39■□□□□ 0.37
TCOF1-213ENST00000514442 RUSC2Q8N2Y8 1516 aa17.38■□□□□ 0.37
TCOF1-213ENST00000514442 ARHGAP35Q9NRY4 1499 aa17.36■□□□□ 0.37
TCOF1-213ENST00000514442 LAS1LQ9Y4W2 734 aaKnown RBP17.36■□□□□ 0.37
TCOF1-213ENST00000514442 RAPGEF2Q9Y4G8 1499 aa17.36■□□□□ 0.37
TCOF1-213ENST00000514442 FOXD1Q16676 465 aa17.33■□□□□ 0.36
TCOF1-213ENST00000514442 B4GALNT3Q6L9W6 998 aa17.33■□□□□ 0.36
TCOF1-213ENST00000514442 FHOD3Q2V2M9 1422 aa17.32■□□□□ 0.36
TCOF1-213ENST00000514442 SETD5Q9C0A6 1442 aa17.31■□□□□ 0.36
TCOF1-213ENST00000514442 ZBTB7CA1YPR0 619 aa17.3■□□□□ 0.36
TCOF1-213ENST00000514442 C14orf37Q86TY3 774 aa17.29■□□□□ 0.36
TCOF1-213ENST00000514442 DCAF11Q8TEB1 546 aa17.29■□□□□ 0.36
TCOF1-213ENST00000514442 CARMIL2Q6F5E8 1435 aa17.28■□□□□ 0.36
TCOF1-213ENST00000514442 FMN1Q68DA7 1419 aa17.27■□□□□ 0.36
TCOF1-213ENST00000514442 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.26■□□□□ 0.35
TCOF1-213ENST00000514442 KNSTRNQ9Y448 316 aa17.26■□□□□ 0.35
TCOF1-213ENST00000514442 FANCD2Q9BXW9 1451 aa17.25■□□□□ 0.35
TCOF1-213ENST00000514442 ANO8Q9HCE9 1232 aaPredicted RBP17.25■□□□□ 0.35
TCOF1-213ENST00000514442 RAB3GAP2Q9H2M9 1393 aa17.24■□□□□ 0.35
TCOF1-213ENST00000514442 IPO9Q96P70 1041 aaKnown RBP17.23■□□□□ 0.35
TCOF1-213ENST00000514442 MLECQ14165 292 aa17.22■□□□□ 0.35
TCOF1-213ENST00000514442 PKD2Q13563 968 aa17.22■□□□□ 0.35
TCOF1-213ENST00000514442 ANP32BQ92688 251 aaKnown RBP17.21■□□□□ 0.35
TCOF1-213ENST00000514442 CDCA8Q53HL2 280 aa17.2■□□□□ 0.34
TCOF1-213ENST00000514442 CC2D1BQ5T0F9 858 aaKnown RBP17.2■□□□□ 0.34
TCOF1-213ENST00000514442 NAP1L5Q96NT1 182 aaPredicted RBP17.2■□□□□ 0.34
TCOF1-213ENST00000514442 TNNT2P45379 298 aaPredicted RBP17.2■□□□□ 0.34
TCOF1-213ENST00000514442 ARXQ96QS3 562 aa17.2■□□□□ 0.34
TCOF1-213ENST00000514442 GGT6Q6P531 493 aa17.17■□□□□ 0.34
TCOF1-213ENST00000514442 POGKQ9P215 609 aa17.17■□□□□ 0.34
TCOF1-213ENST00000514442 NEUROD2Q15784 382 aa17.17■□□□□ 0.34
TCOF1-213ENST00000514442 HSPA5P11021 654 aaKnown RBP17.16■□□□□ 0.34
TCOF1-213ENST00000514442 UPF2Q9HAU5 1272 aaKnown RBP17.15■□□□□ 0.34
TCOF1-213ENST00000514442 KANK1Q14678 1352 aa17.15■□□□□ 0.34
TCOF1-213ENST00000514442 MPHOSPH9Q99550 1183 aa17.15■□□□□ 0.34
TCOF1-213ENST00000514442 HSP90AA1P07900 732 aaKnown RBP17.14■□□□□ 0.33
TCOF1-213ENST00000514442 CFAP53Q96M91 514 aa17.14■□□□□ 0.33
TCOF1-213ENST00000514442 A0A0G2JS52 829 aa17.14■□□□□ 0.33
TCOF1-213ENST00000514442 HNRNPMP52272 730 aaKnown RBP eCLIP17.14■□□□□ 0.33
TCOF1-213ENST00000514442 JPH4Q96JJ6 628 aa17.13■□□□□ 0.33
TCOF1-213ENST00000514442 TRHP20396 242 aaPredicted RBP17.12■□□□□ 0.33
TCOF1-213ENST00000514442 NUP155O75694 1391 aa17.12■□□□□ 0.33
TCOF1-213ENST00000514442 SAFB2Q14151 953 aaKnown RBP eCLIP17.12■□□□□ 0.33
TCOF1-213ENST00000514442 USP35Q9P2H5 1018 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms