RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, human

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM3-209	ENST00000514142	NCL	P19338	710 aa	Known RBP	13.69	□□□□□ -0.22
PDLIM3-209	ENST00000514142	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
PDLIM3-209	ENST00000514142	KDM2A	Q9Y2K7	1162 aa		13.69	□□□□□ -0.22
PDLIM3-209	ENST00000514142	PPP4R2	Q9NY27	417 aa		13.68	□□□□□ -0.22
PDLIM3-209	ENST00000514142	CHGA	P10645	457 aa	Known RBP	13.68	□□□□□ -0.22
PDLIM3-209	ENST00000514142	GOLGA6L22	H0YM25	854 aa		13.67	□□□□□ -0.22
PDLIM3-209	ENST00000514142	RBM19	Q9Y4C8	960 aa	Known RBP	13.66	□□□□□ -0.22
PDLIM3-209	ENST00000514142	PTMA	P06454	111 aa	Known RBP	13.65	□□□□□ -0.22
PDLIM3-209	ENST00000514142	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.65	□□□□□ -0.22
PDLIM3-209	ENST00000514142	B4GALNT3	Q6L9W6	998 aa		13.65	□□□□□ -0.23
PDLIM3-209	ENST00000514142	ZCCHC6	Q5VYS8	1495 aa	Known RBP	13.62	□□□□□ -0.23
PDLIM3-209	ENST00000514142	MYH16	Q9H6N6	1097 aa		13.61	□□□□□ -0.23
PDLIM3-209	ENST00000514142	RGS3	P49796	1198 aa		13.6	□□□□□ -0.23
PDLIM3-209	ENST00000514142	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
PDLIM3-209	ENST00000514142	TPRN	Q4KMQ1	711 aa		13.59	□□□□□ -0.23
PDLIM3-209	ENST00000514142	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.56	□□□□□ -0.24
PDLIM3-209	ENST00000514142	CCDC180	Q9P1Z9	1646 aa		13.54	□□□□□ -0.24
PDLIM3-209	ENST00000514142	ARID4B	Q4LE39	1312 aa	Predicted RBP	13.54	□□□□□ -0.24
PDLIM3-209	ENST00000514142	RRP7BP	Q9NSQ0	103 aa		13.54	□□□□□ -0.24
PDLIM3-209	ENST00000514142	CLIP1	P30622	1438 aa		13.53	□□□□□ -0.24
PDLIM3-209	ENST00000514142	TSHZ2	Q9NRE2	1034 aa		13.52	□□□□□ -0.25
PDLIM3-209	ENST00000514142	CDK11B	P21127	795 aa	Known RBP	13.51	□□□□□ -0.25
PDLIM3-209	ENST00000514142	PLCB2	Q00722	1185 aa		13.51	□□□□□ -0.25
PDLIM3-209	ENST00000514142	STAG3	Q9UJ98	1225 aa		13.5	□□□□□ -0.25
PDLIM3-209	ENST00000514142	SCRIB	Q14160	1630 aa		13.49	□□□□□ -0.25
PDLIM3-209	ENST00000514142	MTUS2	Q5JR59	1369 aa		13.49	□□□□□ -0.25
PDLIM3-209	ENST00000514142	SIN3A	Q96ST3	1273 aa		13.49	□□□□□ -0.25
PDLIM3-209	ENST00000514142	ESF1	Q9H501	851 aa	Known RBP	13.48	□□□□□ -0.25
PDLIM3-209	ENST00000514142	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.48	□□□□□ -0.25
PDLIM3-209	ENST00000514142	CEP162	Q5TB80	1403 aa		13.46	□□□□□ -0.25
PDLIM3-209	ENST00000514142	TSPY4	P0CV99	314 aa		13.45	□□□□□ -0.26
PDLIM3-209	ENST00000514142	TSPY10	P0CW01	314 aa		13.45	□□□□□ -0.26
PDLIM3-209	ENST00000514142	FTSJ3	Q8IY81	847 aa	Known RBP	13.45	□□□□□ -0.26
PDLIM3-209	ENST00000514142	NEUROD2	Q15784	382 aa		13.45	□□□□□ -0.26
PDLIM3-209	ENST00000514142	L1TD1	Q5T7N2	865 aa	Known RBP	13.45	□□□□□ -0.26
PDLIM3-209	ENST00000514142	HSP90AB1	P08238	724 aa	Known RBP	13.44	□□□□□ -0.26
PDLIM3-209	ENST00000514142	ZRSR1	Q15695	479 aa	Known RBP	13.44	□□□□□ -0.26
PDLIM3-209	ENST00000514142	FRAT1	Q92837	279 aa	Predicted RBP	13.44	□□□□□ -0.26
PDLIM3-209	ENST00000514142	SPRYD3	Q8NCJ5	442 aa		13.43	□□□□□ -0.26
PDLIM3-209	ENST00000514142	NPM1	P06748	294 aa	Known RBP eCLIP	13.42	□□□□□ -0.26
PDLIM3-209	ENST00000514142	MSN	P26038	577 aa	Known RBP	13.42	□□□□□ -0.26
PDLIM3-209	ENST00000514142	RGL3	Q3MIN7	710 aa		13.42	□□□□□ -0.26
PDLIM3-209	ENST00000514142	PLPPR3	Q6T4P5	718 aa		13.41	□□□□□ -0.26
PDLIM3-209	ENST00000514142	CASC1	Q6TDU7	716 aa		13.41	□□□□□ -0.26
PDLIM3-209	ENST00000514142	KNSTRN	Q9Y448	316 aa		13.4	□□□□□ -0.26
PDLIM3-209	ENST00000514142	ARID3A	Q99856	593 aa		13.39	□□□□□ -0.27
PDLIM3-209	ENST00000514142	SENP3	Q9H4L4	574 aa	Predicted RBP	13.39	□□□□□ -0.27
PDLIM3-209	ENST00000514142	CARD11	Q9BXL7	1154 aa		13.38	□□□□□ -0.27
PDLIM3-209	ENST00000514142	PNN	Q9H307	717 aa	Known RBP	13.38	□□□□□ -0.27
PDLIM3-209	ENST00000514142	ZBTB7C	A1YPR0	619 aa		13.36	□□□□□ -0.27
PDLIM3-209	ENST00000514142	CCER2	I3L3R5	266 aa		13.36	□□□□□ -0.27
PDLIM3-209	ENST00000514142	HSCB	Q8IWL3	235 aa		13.36	□□□□□ -0.27
PDLIM3-209	ENST00000514142	GZF1	Q9H116	711 aa	Predicted RBP	13.36	□□□□□ -0.27
PDLIM3-209	ENST00000514142	CFAP53	Q96M91	514 aa		13.36	□□□□□ -0.27
PDLIM3-209	ENST00000514142	CHAF1A	Q13111	956 aa	Predicted RBP	13.35	□□□□□ -0.27
PDLIM3-209	ENST00000514142	CC2D1B	Q5T0F9	858 aa	Known RBP	13.34	□□□□□ -0.27
PDLIM3-209	ENST00000514142	SLK	Q9H2G2	1235 aa	Predicted RBP	13.33	□□□□□ -0.28
PDLIM3-209	ENST00000514142	GOLGA3	Q08378	1498 aa		13.32	□□□□□ -0.28
PDLIM3-209	ENST00000514142	IPO9	Q96P70	1041 aa	Known RBP	13.31	□□□□□ -0.28
PDLIM3-209	ENST00000514142	TAOK2	Q9UL54	1235 aa		13.29	□□□□□ -0.28
PDLIM3-209	ENST00000514142	CDCA8	Q53HL2	280 aa		13.29	□□□□□ -0.28
PDLIM3-209	ENST00000514142	GOLGA6L6	A8MZA4	724 aa		13.28	□□□□□ -0.28
PDLIM3-209	ENST00000514142	MAPK8IP3	Q9UPT6	1336 aa		13.27	□□□□□ -0.28
PDLIM3-209	ENST00000514142	PLEKHG5	O94827	1062 aa		13.27	□□□□□ -0.28
PDLIM3-209	ENST00000514142	TNIK	Q9UKE5	1360 aa		13.27	□□□□□ -0.29
PDLIM3-209	ENST00000514142	TCERG1	O14776	1098 aa	Known RBP	13.26	□□□□□ -0.29
PDLIM3-209	ENST00000514142	NRDC	O43847	1150 aa		13.26	□□□□□ -0.29
PDLIM3-209	ENST00000514142	GOLGA6L4	A6NEF3	574 aa		13.25	□□□□□ -0.29
PDLIM3-209	ENST00000514142	DRC7	Q8IY82	874 aa		13.25	□□□□□ -0.29
PDLIM3-209	ENST00000514142	GOLGA6L3	A6NEY3	463 aa		13.24	□□□□□ -0.29
PDLIM3-209	ENST00000514142	RSF1	Q96T23	1441 aa	Predicted RBP	13.24	□□□□□ -0.29
PDLIM3-209	ENST00000514142	MS4A1	P11836	297 aa		13.24	□□□□□ -0.29
PDLIM3-209	ENST00000514142	EEA1	Q15075	1411 aa		13.23	□□□□□ -0.29
PDLIM3-209	ENST00000514142	CHMP7	Q8WUX9	453 aa	Predicted RBP	13.23	□□□□□ -0.29
PDLIM3-209	ENST00000514142	GBP4	Q96PP9	640 aa		13.22	□□□□□ -0.29
PDLIM3-209	ENST00000514142	FGD1	P98174	961 aa		13.22	□□□□□ -0.29
PDLIM3-209	ENST00000514142	RCAN3	Q9UKA8	241 aa		13.22	□□□□□ -0.29
PDLIM3-209	ENST00000514142	HSPA5	P11021	654 aa	Known RBP	13.22	□□□□□ -0.29
PDLIM3-209	ENST00000514142	NUDC	Q9Y266	331 aa		13.22	□□□□□ -0.29
PDLIM3-209	ENST00000514142	HSP90AA2P	Q14568	343 aa	Predicted RBP	13.21	□□□□□ -0.29
PDLIM3-209	ENST00000514142	C14orf37	Q86TY3	774 aa		13.21	□□□□□ -0.29
PDLIM3-209	ENST00000514142	VSIG10	Q8N0Z9	540 aa		13.21	□□□□□ -0.29
PDLIM3-209	ENST00000514142	KCNJ4	P48050	445 aa		13.21	□□□□□ -0.29
PDLIM3-209	ENST00000514142	KIAA2012	Q0VF49	1180 aa		13.21	□□□□□ -0.29
PDLIM3-209	ENST00000514142	CHMP4B	Q9H444	224 aa	Known RBP	13.21	□□□□□ -0.3
PDLIM3-209	ENST00000514142	U2SURP	O15042	1029 aa	Known RBP	13.2	□□□□□ -0.3
PDLIM3-209	ENST00000514142		A0A0G2JS52	829 aa		13.2	□□□□□ -0.3
PDLIM3-209	ENST00000514142	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.19	□□□□□ -0.3
PDLIM3-209	ENST00000514142	TIMELESS	Q9UNS1	1208 aa		13.19	□□□□□ -0.3
PDLIM3-209	ENST00000514142	TULP1	O00294	542 aa	Predicted RBP	13.18	□□□□□ -0.3
PDLIM3-209	ENST00000514142	CCNB3	Q8WWL7	1395 aa		13.18	□□□□□ -0.3
PDLIM3-209	ENST00000514142	RSPH6A	Q9H0K4	717 aa		13.17	□□□□□ -0.3
PDLIM3-209	ENST00000514142	OS9	Q13438	667 aa	Predicted RBP	13.17	□□□□□ -0.3
PDLIM3-209	ENST00000514142	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.17	□□□□□ -0.3
PDLIM3-209	ENST00000514142	TNNT3	P45378	269 aa	Predicted RBP	13.16	□□□□□ -0.3
PDLIM3-209	ENST00000514142	KCNH8	Q96L42	1107 aa		13.15	□□□□□ -0.31
PDLIM3-209	ENST00000514142	PPP1R15A	O75807	674 aa	Predicted RBP	13.14	□□□□□ -0.31
PDLIM3-209	ENST00000514142	DCAF11	Q8TEB1	546 aa		13.14	□□□□□ -0.31
PDLIM3-209	ENST00000514142	PTMS	P20962	102 aa		13.14	□□□□□ -0.31
PDLIM3-209	ENST00000514142	MCC	P23508	829 aa		13.14	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms