RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TNIKQ9UKE5 1360 aa16.45■□□□□ 0.22
LIMCH1-213ENST00000511496 WASHC2CQ9Y4E1 1318 aa16.45■□□□□ 0.22
LIMCH1-213ENST00000511496 RANGAP1P46060 587 aaPredicted RBP16.44■□□□□ 0.22
LIMCH1-213ENST00000511496 PPP1R15AO75807 674 aaPredicted RBP16.42■□□□□ 0.22
LIMCH1-213ENST00000511496 A0A0U1RQG5 324 aaPredicted RBP16.42■□□□□ 0.22
LIMCH1-213ENST00000511496 SIN3AQ96ST3 1273 aa16.4■□□□□ 0.22
LIMCH1-213ENST00000511496 USP35Q9P2H5 1018 aa16.39■□□□□ 0.22
LIMCH1-213ENST00000511496 GSE1Q14687 1217 aa16.39■□□□□ 0.21
LIMCH1-213ENST00000511496 ABCC9O60706 1549 aa16.36■□□□□ 0.21
LIMCH1-213ENST00000511496 FRAT1Q92837 279 aaPredicted RBP16.32■□□□□ 0.2
LIMCH1-213ENST00000511496 NACADO15069 1562 aa16.32■□□□□ 0.2
LIMCH1-213ENST00000511496 PPM1GO15355 546 aaPredicted RBP16.32■□□□□ 0.2
LIMCH1-213ENST00000511496 BAZ1BQ9UIG0 1483 aaKnown RBP16.29■□□□□ 0.2
LIMCH1-213ENST00000511496 SOGA1O94964 1423 aa16.28■□□□□ 0.2
LIMCH1-213ENST00000511496 HSP90AA2PQ14568 343 aaPredicted RBP16.28■□□□□ 0.2
LIMCH1-213ENST00000511496 FAM43AQ8N2R8 423 aa16.27■□□□□ 0.2
LIMCH1-213ENST00000511496 ABCC8Q09428 1581 aa16.24■□□□□ 0.19
LIMCH1-213ENST00000511496 CCDC88BA6NC98 1476 aa16.22■□□□□ 0.19
LIMCH1-213ENST00000511496 NAP1L5Q96NT1 182 aaPredicted RBP16.22■□□□□ 0.19
LIMCH1-213ENST00000511496 FAM9BQ8IZU0 186 aa16.22■□□□□ 0.19
LIMCH1-213ENST00000511496 RBM10P98175 930 aaKnown RBP16.2■□□□□ 0.18
LIMCH1-213ENST00000511496 NFKBIBQ15653 356 aa16.2■□□□□ 0.18
LIMCH1-213ENST00000511496 DCAF11Q8TEB1 546 aa16.2■□□□□ 0.18
LIMCH1-213ENST00000511496 EEA1Q15075 1411 aa16.19■□□□□ 0.18
LIMCH1-213ENST00000511496 HSP90AA1P07900 732 aaKnown RBP16.16■□□□□ 0.18
LIMCH1-213ENST00000511496 CLIP1P30622 1438 aa16.16■□□□□ 0.18
LIMCH1-213ENST00000511496 SLC4A3P48751 1232 aa16.16■□□□□ 0.18
LIMCH1-213ENST00000511496 WDR97A6NE52 1622 aa16.16■□□□□ 0.18
LIMCH1-213ENST00000511496 RUSC2Q8N2Y8 1516 aa16.15■□□□□ 0.18
LIMCH1-213ENST00000511496 RRAGDQ9NQL2 400 aaPredicted RBP16.13■□□□□ 0.17
LIMCH1-213ENST00000511496 CCDC184Q52MB2 194 aa16.13■□□□□ 0.17
LIMCH1-213ENST00000511496 ARID4BQ4LE39 1312 aaPredicted RBP16.12■□□□□ 0.17
LIMCH1-213ENST00000511496 GOLGA3Q08378 1498 aa16.12■□□□□ 0.17
LIMCH1-213ENST00000511496 RRP9O43818 475 aaKnown RBP16.11■□□□□ 0.17
LIMCH1-213ENST00000511496 PDE4AP27815 886 aa16.11■□□□□ 0.17
LIMCH1-213ENST00000511496 VPS8Q8N3P4 1428 aa16.1■□□□□ 0.17
LIMCH1-213ENST00000511496 SENP3-EIF4A1A0A087X0R7 540 aa16.1■□□□□ 0.17
LIMCH1-213ENST00000511496 PDE4CQ08493 712 aa16.1■□□□□ 0.17
LIMCH1-213ENST00000511496 AAMPQ13685 434 aa16.1■□□□□ 0.17
LIMCH1-213ENST00000511496 FGD1P98174 961 aa16.09■□□□□ 0.17
LIMCH1-213ENST00000511496 KANK4Q5T7N3 995 aaPredicted RBP16.07■□□□□ 0.16
LIMCH1-213ENST00000511496 ARXQ96QS3 562 aa16.07■□□□□ 0.16
LIMCH1-213ENST00000511496 PNNQ9H307 717 aaKnown RBP16.06■□□□□ 0.16
LIMCH1-213ENST00000511496 AKNAQ7Z591 1439 aa16.04■□□□□ 0.16
LIMCH1-213ENST00000511496 FRAT2O75474 233 aaPredicted RBP16.04■□□□□ 0.16
LIMCH1-213ENST00000511496 MRS2Q9HD23 443 aa16.04■□□□□ 0.16
LIMCH1-213ENST00000511496 RAB3GAP2Q9H2M9 1393 aa16.03■□□□□ 0.16
LIMCH1-213ENST00000511496 CNGB1Q14028 1251 aaPredicted RBP16.01■□□□□ 0.15
LIMCH1-213ENST00000511496 BACH2Q9BYV9 841 aa16■□□□□ 0.15
LIMCH1-213ENST00000511496 DDRGK1Q96HY6 314 aa16■□□□□ 0.15
LIMCH1-213ENST00000511496 ZBED9Q6R2W3 1325 aa16■□□□□ 0.15
LIMCH1-213ENST00000511496 TCERG1O14776 1098 aaKnown RBP15.99■□□□□ 0.15
LIMCH1-213ENST00000511496 RGS3P49796 1198 aa15.97■□□□□ 0.15
LIMCH1-213ENST00000511496 MAPKBP1O60336 1514 aa15.97■□□□□ 0.15
LIMCH1-213ENST00000511496 BCL11BQ9C0K0 894 aaPredicted RBP15.96■□□□□ 0.15
LIMCH1-213ENST00000511496 SKAP1Q86WV1 359 aa15.92■□□□□ 0.14
LIMCH1-213ENST00000511496 CCNB3Q8WWL7 1395 aa15.91■□□□□ 0.14
LIMCH1-213ENST00000511496 POGKQ9P215 609 aa15.91■□□□□ 0.14
LIMCH1-213ENST00000511496 SCRIBQ14160 1630 aa15.9■□□□□ 0.14
LIMCH1-213ENST00000511496 CECR2Q9BXF3 1484 aa15.9■□□□□ 0.14
LIMCH1-213ENST00000511496 CEP164Q9UPV0 1460 aa15.89■□□□□ 0.13
LIMCH1-213ENST00000511496 NUDCQ9Y266 331 aa15.89■□□□□ 0.13
LIMCH1-213ENST00000511496 PDIA4P13667 645 aaKnown RBP15.89■□□□□ 0.13
LIMCH1-213ENST00000511496 EXOC6Q8TAG9 804 aa15.88■□□□□ 0.13
LIMCH1-213ENST00000511496 AEBP2Q6ZN18 517 aaPredicted RBP15.88■□□□□ 0.13
LIMCH1-213ENST00000511496 TONSLQ96HA7 1378 aa15.86■□□□□ 0.13
LIMCH1-213ENST00000511496 MROH2BQ7Z745 1585 aa15.85■□□□□ 0.13
LIMCH1-213ENST00000511496 PRKRIP1Q9H875 184 aaPredicted RBP15.84■□□□□ 0.13
LIMCH1-213ENST00000511496 MS4A1P11836 297 aa15.84■□□□□ 0.13
LIMCH1-213ENST00000511496 CLCN1P35523 988 aa15.84■□□□□ 0.13
LIMCH1-213ENST00000511496 PRDM4Q9UKN5 801 aa15.84■□□□□ 0.13
LIMCH1-213ENST00000511496 L1TD1Q5T7N2 865 aaKnown RBP15.83■□□□□ 0.13
LIMCH1-213ENST00000511496 RRBP1Q9P2E9 1410 aaKnown RBP15.83■□□□□ 0.12
LIMCH1-213ENST00000511496 NCAPD3P42695 1498 aa15.82■□□□□ 0.12
LIMCH1-213ENST00000511496 FAM50AQ14320 339 aaKnown RBP15.82■□□□□ 0.12
LIMCH1-213ENST00000511496 WIZO95785 1651 aa15.82■□□□□ 0.12
LIMCH1-213ENST00000511496 CUX2O14529 1486 aa15.82■□□□□ 0.12
LIMCH1-213ENST00000511496 SETD5Q9C0A6 1442 aa15.81■□□□□ 0.12
LIMCH1-213ENST00000511496 KIF21BO75037 1637 aa15.8■□□□□ 0.12
LIMCH1-213ENST00000511496 SMG6Q86US8 1419 aaKnown RBP15.8■□□□□ 0.12
LIMCH1-213ENST00000511496 PDCL3Q9H2J4 239 aa15.8■□□□□ 0.12
LIMCH1-213ENST00000511496 CALD1Q05682 793 aaKnown RBP15.8■□□□□ 0.12
LIMCH1-213ENST00000511496 RNF123Q5XPI4 1314 aa15.79■□□□□ 0.12
LIMCH1-213ENST00000511496 HSPA5P11021 654 aaKnown RBP15.78■□□□□ 0.12
LIMCH1-213ENST00000511496 PANK2Q9BZ23 570 aa15.77■□□□□ 0.12
LIMCH1-213ENST00000511496 EIF4G1Q04637 1599 aaKnown RBP15.76■□□□□ 0.11
LIMCH1-213ENST00000511496 BBXQ8WY36 941 aaPredicted RBP15.76■□□□□ 0.11
LIMCH1-213ENST00000511496 ARID3AQ99856 593 aa15.76■□□□□ 0.11
LIMCH1-213ENST00000511496 XRCC6P12956 609 aaKnown RBP eCLIP15.75■□□□□ 0.11
LIMCH1-213ENST00000511496 GZF1Q9H116 711 aaPredicted RBP15.75■□□□□ 0.11
LIMCH1-213ENST00000511496 RAPGEF2Q9Y4G8 1499 aa15.73■□□□□ 0.11
LIMCH1-213ENST00000511496 ZHX1Q9UKY1 873 aaPredicted RBP15.72■□□□□ 0.11
LIMCH1-213ENST00000511496 GOLGA6L3A6NEY3 463 aa15.72■□□□□ 0.11
LIMCH1-213ENST00000511496 RRP1P56182 461 aaKnown RBP15.72■□□□□ 0.11
LIMCH1-213ENST00000511496 SLKQ9H2G2 1235 aaPredicted RBP15.71■□□□□ 0.11
LIMCH1-213ENST00000511496 PEG3Q9GZU2 1588 aa15.71■□□□□ 0.1
LIMCH1-213ENST00000511496 SMARCA2P51531 1590 aa15.69■□□□□ 0.1
LIMCH1-213ENST00000511496 CHMP4BQ9H444 224 aaKnown RBP15.68■□□□□ 0.1
LIMCH1-213ENST00000511496 EIF4G2P78344 907 aaKnown RBP eCLIP15.67■□□□□ 0.1
LIMCH1-213ENST00000511496 POLR3GLQ9BT43 218 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms