RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 DEKP35659 375 aaKnown RBP14.63□□□□□ -0.07
LIMCH1-208ENST00000508501 CHMP4BQ9H444 224 aaKnown RBP14.62□□□□□ -0.07
LIMCH1-208ENST00000508501 CFAP44Q96MT7 982 aa14.61□□□□□ -0.07
LIMCH1-208ENST00000508501 PNNQ9H307 717 aaKnown RBP14.61□□□□□ -0.07
LIMCH1-208ENST00000508501 RTN4Q9NQC3 1192 aaKnown RBP14.57□□□□□ -0.08
LIMCH1-208ENST00000508501 RSPH6AQ9H0K4 717 aa14.55□□□□□ -0.08
LIMCH1-208ENST00000508501 MS4A1P11836 297 aa14.53□□□□□ -0.08
LIMCH1-208ENST00000508501 KIAA2012Q0VF49 1180 aa14.53□□□□□ -0.08
LIMCH1-208ENST00000508501 MIER1Q8N108 512 aa14.53□□□□□ -0.08
LIMCH1-208ENST00000508501 CALRP27797 417 aaKnown RBP14.49□□□□□ -0.09
LIMCH1-208ENST00000508501 LAS1LQ9Y4W2 734 aaKnown RBP14.48□□□□□ -0.09
LIMCH1-208ENST00000508501 HSP90AB1P08238 724 aaKnown RBP14.47□□□□□ -0.09
LIMCH1-208ENST00000508501 CSRNP3Q8WYN3 585 aa14.47□□□□□ -0.09
LIMCH1-208ENST00000508501 EIF4G2P78344 907 aaKnown RBP eCLIP14.46□□□□□ -0.09
LIMCH1-208ENST00000508501 HSCBQ8IWL3 235 aa14.46□□□□□ -0.1
LIMCH1-208ENST00000508501 HSP90AA2PQ14568 343 aaPredicted RBP14.45□□□□□ -0.1
LIMCH1-208ENST00000508501 PLCB2Q00722 1185 aa14.45□□□□□ -0.1
LIMCH1-208ENST00000508501 SETQ01105 290 aaPredicted RBP14.45□□□□□ -0.1
LIMCH1-208ENST00000508501 GOLGA6L1Q8N7Z2 621 aa14.45□□□□□ -0.1
LIMCH1-208ENST00000508501 GOLGA6L4A6NEF3 574 aa14.44□□□□□ -0.1
LIMCH1-208ENST00000508501 GBP4Q96PP9 640 aa14.44□□□□□ -0.1
LIMCH1-208ENST00000508501 SALL2Q9Y467 1007 aaPredicted RBP14.44□□□□□ -0.1
LIMCH1-208ENST00000508501 IRX6P78412 446 aaPredicted RBP14.42□□□□□ -0.1
LIMCH1-208ENST00000508501 SYAP1Q96A49 352 aaPredicted RBP14.41□□□□□ -0.1
LIMCH1-208ENST00000508501 SUPT16HQ9Y5B9 1047 aaKnown RBP14.39□□□□□ -0.11
LIMCH1-208ENST00000508501 GOLGA6L3A6NEY3 463 aa14.39□□□□□ -0.11
LIMCH1-208ENST00000508501 CDCA8Q53HL2 280 aa14.39□□□□□ -0.11
LIMCH1-208ENST00000508501 CFAP53Q96M91 514 aa14.38□□□□□ -0.11
LIMCH1-208ENST00000508501 HTATSF1O43719 755 aaKnown RBP14.36□□□□□ -0.11
LIMCH1-208ENST00000508501 AMER1Q5JTC6 1135 aaPredicted RBP14.36□□□□□ -0.11
LIMCH1-208ENST00000508501 A0A0U1RQG5 324 aaPredicted RBP14.36□□□□□ -0.11
LIMCH1-208ENST00000508501 DRC7Q8IY82 874 aa14.36□□□□□ -0.11
LIMCH1-208ENST00000508501 FTSJ3Q8IY81 847 aaKnown RBP14.36□□□□□ -0.11
LIMCH1-208ENST00000508501 RBM19Q9Y4C8 960 aaKnown RBP14.36□□□□□ -0.11
LIMCH1-208ENST00000508501 MCCP23508 829 aa14.36□□□□□ -0.11
LIMCH1-208ENST00000508501 TCERG1O14776 1098 aaKnown RBP14.31□□□□□ -0.12
LIMCH1-208ENST00000508501 VSIG10Q8N0Z9 540 aa14.31□□□□□ -0.12
LIMCH1-208ENST00000508501 TPM4P67936 248 aa14.3□□□□□ -0.12
LIMCH1-208ENST00000508501 GPS2Q13227 327 aa14.28□□□□□ -0.12
LIMCH1-208ENST00000508501 NOC3LQ8WTT2 800 aaKnown RBP14.28□□□□□ -0.12
LIMCH1-208ENST00000508501 CCDC34Q96HJ3 373 aa14.27□□□□□ -0.12
LIMCH1-208ENST00000508501 CCER2I3L3R5 266 aa14.27□□□□□ -0.13
LIMCH1-208ENST00000508501 CSPP1Q1MSJ5 1256 aa14.27□□□□□ -0.13
LIMCH1-208ENST00000508501 FGD1P98174 961 aa14.26□□□□□ -0.13
LIMCH1-208ENST00000508501 MTERF4Q7Z6M4 381 aaKnown RBP14.26□□□□□ -0.13
LIMCH1-208ENST00000508501 HAP1P54257 671 aaPredicted RBP14.26□□□□□ -0.13
LIMCH1-208ENST00000508501 ESF1Q9H501 851 aaKnown RBP14.26□□□□□ -0.13
LIMCH1-208ENST00000508501 RGS3P49796 1198 aa14.25□□□□□ -0.13
LIMCH1-208ENST00000508501 MAP7D2Q96T17 732 aa14.25□□□□□ -0.13
LIMCH1-208ENST00000508501 PHF14O94880 888 aa14.24□□□□□ -0.13
LIMCH1-208ENST00000508501 STAG3Q9UJ98 1225 aa14.24□□□□□ -0.13
LIMCH1-208ENST00000508501 IPO9Q96P70 1041 aaKnown RBP14.22□□□□□ -0.13
LIMCH1-208ENST00000508501 NUDCQ9Y266 331 aa14.22□□□□□ -0.13
LIMCH1-208ENST00000508501 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.21□□□□□ -0.13
LIMCH1-208ENST00000508501 ZNF777Q9ULD5 760 aaPredicted RBP14.21□□□□□ -0.13
LIMCH1-208ENST00000508501 TIMELESSQ9UNS1 1208 aa14.21□□□□□ -0.13
LIMCH1-208ENST00000508501 KCNJ4P48050 445 aa14.2□□□□□ -0.14
LIMCH1-208ENST00000508501 NOM1Q5C9Z4 860 aaKnown RBP14.2□□□□□ -0.14
LIMCH1-208ENST00000508501 TEX35Q5T0J7 233 aa14.2□□□□□ -0.14
LIMCH1-208ENST00000508501 KNSTRNQ9Y448 316 aa14.19□□□□□ -0.14
LIMCH1-208ENST00000508501 CHGAP10645 457 aaKnown RBP14.18□□□□□ -0.14
LIMCH1-208ENST00000508501 CALD1Q05682 793 aaKnown RBP14.18□□□□□ -0.14
LIMCH1-208ENST00000508501 DDX11L8A8MPP1 907 aa14.18□□□□□ -0.14
LIMCH1-208ENST00000508501 SKOR2Q2VWA4 1001 aaPredicted RBP14.17□□□□□ -0.14
LIMCH1-208ENST00000508501 MAPK8IP3Q9UPT6 1336 aa14.17□□□□□ -0.14
LIMCH1-208ENST00000508501 TSPY4P0CV99 314 aa14.17□□□□□ -0.14
LIMCH1-208ENST00000508501 TSPY10P0CW01 314 aa14.17□□□□□ -0.14
LIMCH1-208ENST00000508501 B4GALNT3Q6L9W6 998 aa14.15□□□□□ -0.14
LIMCH1-208ENST00000508501 TPM3P06753 285 aa14.14□□□□□ -0.15
LIMCH1-208ENST00000508501 ZNF771Q7L3S4 317 aaPredicted RBP14.14□□□□□ -0.15
LIMCH1-208ENST00000508501 APPP05067 770 aa14.12□□□□□ -0.15
LIMCH1-208ENST00000508501 CCDC70Q6NSX1 233 aa14.12□□□□□ -0.15
LIMCH1-208ENST00000508501 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.11□□□□□ -0.15
LIMCH1-208ENST00000508501 TPRNQ4KMQ1 711 aa14.11□□□□□ -0.15
LIMCH1-208ENST00000508501 CCDC66A2RUB6 948 aa14.1□□□□□ -0.15
LIMCH1-208ENST00000508501 GSE1Q14687 1217 aa14.1□□□□□ -0.15
LIMCH1-208ENST00000508501 ABCC9O60706 1549 aa14.09□□□□□ -0.15
LIMCH1-208ENST00000508501 CHMP4CQ96CF2 233 aa14.09□□□□□ -0.15
LIMCH1-208ENST00000508501 RWDD1Q9H446 243 aaPredicted RBP14.09□□□□□ -0.15
LIMCH1-208ENST00000508501 TSHZ2Q9NRE2 1034 aa14.09□□□□□ -0.15
LIMCH1-208ENST00000508501 CCDC180Q9P1Z9 1646 aa14.09□□□□□ -0.15
LIMCH1-208ENST00000508501 IPO8O15397 1037 aaKnown RBP14.09□□□□□ -0.15
LIMCH1-208ENST00000508501 KIAA1211Q6ZU35 1233 aa14.09□□□□□ -0.15
LIMCH1-208ENST00000508501 OS9Q13438 667 aaPredicted RBP14.07□□□□□ -0.16
LIMCH1-208ENST00000508501 CHMP4AQ9BY43 222 aa14.07□□□□□ -0.16
LIMCH1-208ENST00000508501 P3H3Q8IVL6 736 aa14.07□□□□□ -0.16
LIMCH1-208ENST00000508501 FRAT1Q92837 279 aaPredicted RBP14.07□□□□□ -0.16
LIMCH1-208ENST00000508501 ACBD3Q9H3P7 528 aa14.07□□□□□ -0.16
LIMCH1-208ENST00000508501 CWC15Q9P013 229 aaKnown RBP14.07□□□□□ -0.16
LIMCH1-208ENST00000508501 KIF3AQ9Y496 699 aa14.06□□□□□ -0.16
LIMCH1-208ENST00000508501 CDR1P51861 262 aa14.06□□□□□ -0.16
LIMCH1-208ENST00000508501 GNL2Q13823 731 aaKnown RBP14.06□□□□□ -0.16
LIMCH1-208ENST00000508501 PMFBP1Q8TBY8 1022 aa14.06□□□□□ -0.16
LIMCH1-208ENST00000508501 KDM2AQ9Y2K7 1162 aa14.06□□□□□ -0.16
LIMCH1-208ENST00000508501 PKNOX2Q96KN3 472 aa14.05□□□□□ -0.16
LIMCH1-208ENST00000508501 HMMRO75330 724 aa14.04□□□□□ -0.16
LIMCH1-208ENST00000508501 ARID3AQ99856 593 aa14.04□□□□□ -0.16
LIMCH1-208ENST00000508501 GZF1Q9H116 711 aaPredicted RBP14.04□□□□□ -0.16
LIMCH1-208ENST00000508501 MTUS2Q5JR59 1369 aa14.04□□□□□ -0.16
LIMCH1-208ENST00000508501 RRP12Q5JTH9 1297 aaKnown RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms