RNA–Protein interactions for RNA: ENST00000504841.6

NPIPB3-203, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

APPRIS P1 TSL 1 (best)

Gene NPIPB3, Length 1,254 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-203ENST00000504841 BIVM-ERCC5R4GMW8 1640 aa12.44□□□□□ -0.42
NPIPB3-203ENST00000504841 PRG4Q92954 1404 aaPredicted RBP12.43□□□□□ -0.42
NPIPB3-203ENST00000504841 KIF13AQ9H1H9 1805 aa12.41□□□□□ -0.42
NPIPB3-203ENST00000504841 ERICH3Q5RHP9 1530 aa12.41□□□□□ -0.42
NPIPB3-203ENST00000504841 JPH4Q96JJ6 628 aa12.37□□□□□ -0.43
NPIPB3-203ENST00000504841 RUSC2Q8N2Y8 1516 aa12.37□□□□□ -0.43
NPIPB3-203ENST00000504841 FAM69CQ0P6D2 419 aa12.36□□□□□ -0.43
NPIPB3-203ENST00000504841 POTEDQ86YR6 584 aa12.36□□□□□ -0.43
NPIPB3-203ENST00000504841 NPM1P06748 294 aaKnown RBP eCLIP12.34□□□□□ -0.43
NPIPB3-203ENST00000504841 ABCC10Q5T3U5 1492 aa12.34□□□□□ -0.43
NPIPB3-203ENST00000504841 DIP2BQ9P265 1576 aa12.31□□□□□ -0.44
NPIPB3-203ENST00000504841 ADCY10Q96PN6 1610 aa12.31□□□□□ -0.44
NPIPB3-203ENST00000504841 MAPKBP1O60336 1514 aa12.31□□□□□ -0.44
NPIPB3-203ENST00000504841 KDM6BO15054 1643 aa12.29□□□□□ -0.44
NPIPB3-203ENST00000504841 TTBK1Q5TCY1 1321 aaPredicted RBP12.28□□□□□ -0.44
NPIPB3-203ENST00000504841 TSPOAP1O95153 1857 aa12.27□□□□□ -0.45
NPIPB3-203ENST00000504841 KIAA0586Q9BVV6 1533 aa12.24□□□□□ -0.45
NPIPB3-203ENST00000504841 KDM4FA0A1W2PPD8 638 aa12.22□□□□□ -0.45
NPIPB3-203ENST00000504841 CUL7Q14999 1698 aa12.21□□□□□ -0.45
NPIPB3-203ENST00000504841 KIF27Q86VH2 1401 aa12.2□□□□□ -0.46
NPIPB3-203ENST00000504841 PPP6R1Q9UPN7 881 aa12.2□□□□□ -0.46
NPIPB3-203ENST00000504841 PTPRGP23470 1445 aa12.2□□□□□ -0.46
NPIPB3-203ENST00000504841 IGF1RP08069 1367 aa12.19□□□□□ -0.46
NPIPB3-203ENST00000504841 ADRA2BP18089 450 aa12.19□□□□□ -0.46
NPIPB3-203ENST00000504841 CARMIL2Q6F5E8 1435 aa12.15□□□□□ -0.46
NPIPB3-203ENST00000504841 ASXL2Q76L83 1435 aa12.15□□□□□ -0.46
NPIPB3-203ENST00000504841 ABCC2Q92887 1545 aa12.15□□□□□ -0.46
NPIPB3-203ENST00000504841 TNIKQ9UKE5 1360 aa12.15□□□□□ -0.46
NPIPB3-203ENST00000504841 CARMIL1Q5VZK9 1371 aa12.14□□□□□ -0.47
NPIPB3-203ENST00000504841 ADGRL1O94910 1474 aa12.12□□□□□ -0.47
NPIPB3-203ENST00000504841 IQGAP2Q13576 1575 aa12.12□□□□□ -0.47
NPIPB3-203ENST00000504841 PPRC1Q5VV67 1664 aaKnown RBP12.12□□□□□ -0.47
NPIPB3-203ENST00000504841 PLB1Q6P1J6 1458 aa12.11□□□□□ -0.47
NPIPB3-203ENST00000504841 ILDR1Q86SU0 546 aaPredicted RBP12.1□□□□□ -0.47
NPIPB3-203ENST00000504841 UACAQ9BZF9 1416 aa12.1□□□□□ -0.47
NPIPB3-203ENST00000504841 GLI2P10070 1586 aa12.09□□□□□ -0.47
NPIPB3-203ENST00000504841 UHRF1BP1LA0JNW5 1464 aa12.08□□□□□ -0.48
NPIPB3-203ENST00000504841 DISP1Q96F81 1524 aa12.06□□□□□ -0.48
NPIPB3-203ENST00000504841 COL17A1Q9UMD9 1497 aaPredicted RBP12.06□□□□□ -0.48
NPIPB3-203ENST00000504841 EPRSP07814 1512 aaKnown RBP12.06□□□□□ -0.48
NPIPB3-203ENST00000504841 MAP3K4Q9Y6R4 1608 aa12.05□□□□□ -0.48
NPIPB3-203ENST00000504841 ZCCHC11Q5TAX3 1644 aaKnown RBP12.04□□□□□ -0.48
NPIPB3-203ENST00000504841 TEX14Q8IWB6 1497 aa12.03□□□□□ -0.48
NPIPB3-203ENST00000504841 KDM5BQ9UGL1 1544 aa12.03□□□□□ -0.48
NPIPB3-203ENST00000504841 PIAS4Q8N2W9 510 aaPredicted RBP12.03□□□□□ -0.48
NPIPB3-203ENST00000504841 HECW2Q9P2P5 1572 aa12.02□□□□□ -0.49
NPIPB3-203ENST00000504841 KIAA0556O60303 1618 aa12.02□□□□□ -0.49
NPIPB3-203ENST00000504841 UGGT2Q9NYU1 1516 aa12.01□□□□□ -0.49
NPIPB3-203ENST00000504841 RAPGEF2Q9Y4G8 1499 aa12□□□□□ -0.49
NPIPB3-203ENST00000504841 WDR7Q9Y4E6 1490 aa11.99□□□□□ -0.49
NPIPB3-203ENST00000504841 KCNH8Q96L42 1107 aa11.95□□□□□ -0.5
NPIPB3-203ENST00000504841 CD109Q6YHK3 1445 aa11.94□□□□□ -0.5
NPIPB3-203ENST00000504841 CTTNBP2Q8WZ74 1663 aa11.94□□□□□ -0.5
NPIPB3-203ENST00000504841 ARID3CA6NKF2 412 aa11.92□□□□□ -0.5
NPIPB3-203ENST00000504841 MAGI3Q5TCQ9 1506 aa11.91□□□□□ -0.5
NPIPB3-203ENST00000504841 CFAP43Q8NDM7 1665 aa11.91□□□□□ -0.5
NPIPB3-203ENST00000504841 KIF21BO75037 1637 aa11.91□□□□□ -0.5
NPIPB3-203ENST00000504841 ABCA8O94911 1581 aa11.91□□□□□ -0.5
NPIPB3-203ENST00000504841 GOLGA3Q08378 1498 aa11.9□□□□□ -0.5
NPIPB3-203ENST00000504841 MSH5O43196 834 aa11.85□□□□□ -0.51
NPIPB3-203ENST00000504841 P3H3Q8IVL6 736 aa11.85□□□□□ -0.51
NPIPB3-203ENST00000504841 ARAP3Q8WWN8 1544 aa11.81□□□□□ -0.52
NPIPB3-203ENST00000504841 FAM9AQ8IZU1 332 aaPredicted RBP11.81□□□□□ -0.52
NPIPB3-203ENST00000504841 PRXQ9BXM0 1461 aa11.81□□□□□ -0.52
NPIPB3-203ENST00000504841 ATP10BO94823 1461 aa11.8□□□□□ -0.52
NPIPB3-203ENST00000504841 PTPRMP28827 1452 aa11.79□□□□□ -0.52
NPIPB3-203ENST00000504841 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.79□□□□□ -0.52
NPIPB3-203ENST00000504841 RAPGEF3O95398 923 aa11.79□□□□□ -0.52
NPIPB3-203ENST00000504841 HNRNPUL2Q1KMD3 747 aaKnown RBP11.79□□□□□ -0.52
NPIPB3-203ENST00000504841 ARID4BQ4LE39 1312 aaPredicted RBP11.79□□□□□ -0.52
NPIPB3-203ENST00000504841 FBXO41Q8TF61 875 aa11.78□□□□□ -0.52
NPIPB3-203ENST00000504841 ABCA9Q8IUA7 1624 aa11.78□□□□□ -0.52
NPIPB3-203ENST00000504841 ADAMTSL3P82987 1691 aa11.78□□□□□ -0.52
NPIPB3-203ENST00000504841 RANGAP1P46060 587 aaPredicted RBP11.76□□□□□ -0.53
NPIPB3-203ENST00000504841 RAPGEF6Q8TEU7 1601 aa11.75□□□□□ -0.53
NPIPB3-203ENST00000504841 MADDQ8WXG6 1647 aa11.75□□□□□ -0.53
NPIPB3-203ENST00000504841 FRMPD1Q5SYB0 1578 aa11.75□□□□□ -0.53
NPIPB3-203ENST00000504841 PHLDB1Q86UU1 1377 aa11.74□□□□□ -0.53
NPIPB3-203ENST00000504841 NEO1Q92859 1461 aa11.74□□□□□ -0.53
NPIPB3-203ENST00000504841 BCORL1Q5H9F3 1711 aa11.74□□□□□ -0.53
NPIPB3-203ENST00000504841 PCF11O94913 1555 aaKnown RBP11.73□□□□□ -0.53
NPIPB3-203ENST00000504841 SAMD9Q5K651 1589 aa11.73□□□□□ -0.53
NPIPB3-203ENST00000504841 RIMS1Q86UR5 1692 aaKnown RBP11.71□□□□□ -0.53
NPIPB3-203ENST00000504841 ARHGEF40Q8TER5 1519 aa11.7□□□□□ -0.54
NPIPB3-203ENST00000504841 LMTK3Q96Q04 1460 aa11.7□□□□□ -0.54
NPIPB3-203ENST00000504841 NUP153P49790 1475 aaKnown RBP11.7□□□□□ -0.54
NPIPB3-203ENST00000504841 FHOD3Q2V2M9 1422 aa11.69□□□□□ -0.54
NPIPB3-203ENST00000504841 DENND4BO75064 1496 aaPredicted RBP11.69□□□□□ -0.54
NPIPB3-203ENST00000504841 HSPA2P54652 639 aa11.68□□□□□ -0.54
NPIPB3-203ENST00000504841 CSRNP3Q8WYN3 585 aa11.67□□□□□ -0.54
NPIPB3-203ENST00000504841 RICTORQ6R327 1708 aa11.66□□□□□ -0.54
NPIPB3-203ENST00000504841 FANCAO15360 1455 aa11.66□□□□□ -0.54
NPIPB3-203ENST00000504841 AKNAQ7Z591 1439 aa11.66□□□□□ -0.54
NPIPB3-203ENST00000504841 PLEKHD1A6NEE1 506 aa11.65□□□□□ -0.54
NPIPB3-203ENST00000504841 MLECQ14165 292 aa11.65□□□□□ -0.54
NPIPB3-203ENST00000504841 CFAP74Q9C0B2 1584 aa11.65□□□□□ -0.54
NPIPB3-203ENST00000504841 ZFYVE16Q7Z3T8 1539 aa11.65□□□□□ -0.55
NPIPB3-203ENST00000504841 TTC37Q6PGP7 1564 aa11.64□□□□□ -0.55
NPIPB3-203ENST00000504841 YEATS2Q9ULM3 1422 aa11.64□□□□□ -0.55
NPIPB3-203ENST00000504841 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms