RNA–Protein interactions for RNA: ENST00000503742.5

UBE2D3-216, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 1 (best)

Gene UBE2D3, Length 1,977 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-216ENST00000503742 EFCAB5A4FU69 1503 aa32.75■■■□□ 2.83
UBE2D3-216ENST00000503742 GRIN2BQ13224 1484 aa32.71■■■□□ 2.83
UBE2D3-216ENST00000503742 FHAD1B1AJZ9 1412 aa32.7■■■□□ 2.83
UBE2D3-216ENST00000503742 ZNF608Q9ULD9 1512 aaPredicted RBP32.7■■■□□ 2.82
UBE2D3-216ENST00000503742 ADAMTS12P58397 1594 aa32.69■■■□□ 2.82
UBE2D3-216ENST00000503742 ZEB1P37275 1124 aaPredicted RBP32.65■■■□□ 2.82
UBE2D3-216ENST00000503742 MAP3K1Q13233 1512 aa32.63■■■□□ 2.81
UBE2D3-216ENST00000503742 KANK4Q5T7N3 995 aaPredicted RBP32.63■■■□□ 2.81
UBE2D3-216ENST00000503742 FHOD3Q2V2M9 1422 aa32.58■■■□□ 2.81
UBE2D3-216ENST00000503742 SAMD9Q5K651 1589 aa32.58■■■□□ 2.81
UBE2D3-216ENST00000503742 EIF4G3O43432 1585 aaKnown RBP32.57■■■□□ 2.8
UBE2D3-216ENST00000503742 TIAM1Q13009 1591 aa32.55■■■□□ 2.8
UBE2D3-216ENST00000503742 P3H3Q8IVL6 736 aa32.55■■■□□ 2.8
UBE2D3-216ENST00000503742 PCF11O94913 1555 aaKnown RBP32.54■■■□□ 2.8
UBE2D3-216ENST00000503742 FYCO1Q9BQS8 1478 aa32.47■■■□□ 2.79
UBE2D3-216ENST00000503742 CASKIN1Q8WXD9 1431 aa32.46■■■□□ 2.79
UBE2D3-216ENST00000503742 CFAP43Q8NDM7 1665 aa32.46■■■□□ 2.79
UBE2D3-216ENST00000503742 SNAPC4Q5SXM2 1469 aa32.46■■■□□ 2.79
UBE2D3-216ENST00000503742 FMN1Q68DA7 1419 aa32.45■■■□□ 2.79
UBE2D3-216ENST00000503742 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.44■■■□□ 2.78
UBE2D3-216ENST00000503742 IQGAP2Q13576 1575 aa32.42■■■□□ 2.78
UBE2D3-216ENST00000503742 LRRC9Q6ZRR7 1453 aa32.4■■■□□ 2.78
UBE2D3-216ENST00000503742 RRBP1Q9P2E9 1410 aaKnown RBP32.4■■■□□ 2.78
UBE2D3-216ENST00000503742 MAGI1Q96QZ7 1491 aaPredicted RBP32.38■■■□□ 2.77
UBE2D3-216ENST00000503742 CCER1Q8TC90 406 aaPredicted RBP32.34■■■□□ 2.77
UBE2D3-216ENST00000503742 GRIN2AQ12879 1464 aa32.34■■■□□ 2.77
UBE2D3-216ENST00000503742 HNRNPUL2Q1KMD3 747 aaKnown RBP32.33■■■□□ 2.77
UBE2D3-216ENST00000503742 UGGT2Q9NYU1 1516 aa32.29■■■□□ 2.76
UBE2D3-216ENST00000503742 KIAA0586Q9BVV6 1533 aa32.29■■■□□ 2.76
UBE2D3-216ENST00000503742 SYNJ2O15056 1496 aa32.27■■■□□ 2.76
UBE2D3-216ENST00000503742 ATP1B4Q9UN42 357 aaPredicted RBP32.23■■■□□ 2.75
UBE2D3-216ENST00000503742 CCNB3Q8WWL7 1395 aa32.23■■■□□ 2.75
UBE2D3-216ENST00000503742 LRRIQ1Q96JM4 1722 aa32.2■■■□□ 2.75
UBE2D3-216ENST00000503742 PHLDB1Q86UU1 1377 aa32.15■■■□□ 2.74
UBE2D3-216ENST00000503742 CHMP7Q8WUX9 453 aaPredicted RBP32.14■■■□□ 2.74
UBE2D3-216ENST00000503742 CEP170Q5SW79 1584 aa32.14■■■□□ 2.74
UBE2D3-216ENST00000503742 DISP1Q96F81 1524 aa32.11■■■□□ 2.73
UBE2D3-216ENST00000503742 KIAA0556O60303 1618 aa32.1■■■□□ 2.73
UBE2D3-216ENST00000503742 NUP160Q12769 1436 aa32.09■■■□□ 2.73
UBE2D3-216ENST00000503742 HECW1Q76N89 1606 aa32.06■■■□□ 2.72
UBE2D3-216ENST00000503742 CCDC18Q5T9S5 1454 aa32.04■■■□□ 2.72
UBE2D3-216ENST00000503742 MTUS2Q5JR59 1369 aa32.01■■■□□ 2.71
UBE2D3-216ENST00000503742 FBLN2P98095 1184 aa31.99■■■□□ 2.71
UBE2D3-216ENST00000503742 EHBP1L1Q8N3D4 1523 aa31.97■■■□□ 2.71
UBE2D3-216ENST00000503742 EPRSP07814 1512 aaKnown RBP31.95■■■□□ 2.71
UBE2D3-216ENST00000503742 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.93■■■□□ 2.71e-10■■■□□ 14.9
UBE2D3-216ENST00000503742 MAGI3Q5TCQ9 1506 aa31.92■■■□□ 2.7
UBE2D3-216ENST00000503742 SUPT6HQ7KZ85 1726 aaKnown RBP31.91■■■□□ 2.7
UBE2D3-216ENST00000503742 NCOA2Q15596 1464 aa31.89■■■□□ 2.7
UBE2D3-216ENST00000503742 ARHGEF11O15085 1522 aa31.87■■■□□ 2.69
UBE2D3-216ENST00000503742 FGD6Q6ZV73 1430 aa31.87■■■□□ 2.69
UBE2D3-216ENST00000503742 JPH4Q96JJ6 628 aa31.86■■■□□ 2.69
UBE2D3-216ENST00000503742 RAPGEF6Q8TEU7 1601 aa31.85■■■□□ 2.69
UBE2D3-216ENST00000503742 CDK13Q14004 1512 aaKnown RBP31.84■■■□□ 2.69
UBE2D3-216ENST00000503742 ITGAEP38570 1179 aa31.84■■■□□ 2.69
UBE2D3-216ENST00000503742 FAM50AQ14320 339 aaKnown RBP31.83■■■□□ 2.69
UBE2D3-216ENST00000503742 CARMIL2Q6F5E8 1435 aa31.82■■■□□ 2.68
UBE2D3-216ENST00000503742 DHX57Q6P158 1386 aaKnown RBP31.8■■■□□ 2.68
UBE2D3-216ENST00000503742 MYOM3Q5VTT5 1437 aa31.8■■■□□ 2.68
UBE2D3-216ENST00000503742 NUP153P49790 1475 aaKnown RBP31.8■■■□□ 2.68
UBE2D3-216ENST00000503742 CHD1O14646 1710 aa31.78■■■□□ 2.68
UBE2D3-216ENST00000503742 CLSPNQ9HAW4 1339 aa31.76■■■□□ 2.68
UBE2D3-216ENST00000503742 SETD5Q9C0A6 1442 aa31.71■■■□□ 2.67
UBE2D3-216ENST00000503742 RAB3GAP2Q9H2M9 1393 aa31.7■■■□□ 2.67
UBE2D3-216ENST00000503742 PLB1Q6P1J6 1458 aa31.68■■■□□ 2.66
UBE2D3-216ENST00000503742 PTPN23Q9H3S7 1636 aa31.65■■■□□ 2.66
UBE2D3-216ENST00000503742 ARID3CA6NKF2 412 aa31.65■■■□□ 2.66
UBE2D3-216ENST00000503742 TCOF1Q13428 1488 aaKnown RBP31.62■■■□□ 2.65
UBE2D3-216ENST00000503742 ABCA8O94911 1581 aa31.61■■■□□ 2.65
UBE2D3-216ENST00000503742 PRG4Q92954 1404 aaPredicted RBP31.6■■■□□ 2.65
UBE2D3-216ENST00000503742 SHROOM2Q13796 1616 aa31.59■■■□□ 2.65
UBE2D3-216ENST00000503742 MIA2Q96PC5 1412 aa31.58■■■□□ 2.65
UBE2D3-216ENST00000503742 PTPRKQ15262 1439 aa31.57■■■□□ 2.64
UBE2D3-216ENST00000503742 CDK11AQ9UQ88 783 aaPredicted RBP31.57■■■□□ 2.64
UBE2D3-216ENST00000503742 TROQ12816 1431 aaPredicted RBP31.52■■■□□ 2.64
UBE2D3-216ENST00000503742 HFM1A2PYH4 1435 aa31.48■■■□□ 2.63
UBE2D3-216ENST00000503742 ADCY10Q96PN6 1610 aa31.47■■■□□ 2.63
UBE2D3-216ENST00000503742 PTPRGP23470 1445 aa31.46■■■□□ 2.63
UBE2D3-216ENST00000503742 MAPKBP1O60336 1514 aa31.46■■■□□ 2.63
UBE2D3-216ENST00000503742 ATP10BO94823 1461 aa31.43■■■□□ 2.62
UBE2D3-216ENST00000503742 CLASP1Q7Z460 1538 aa31.42■■■□□ 2.62
UBE2D3-216ENST00000503742 NAIPQ13075 1403 aa31.39■■■□□ 2.62
UBE2D3-216ENST00000503742 KIF14Q15058 1648 aa31.37■■■□□ 2.61
UBE2D3-216ENST00000503742 AKNAQ7Z591 1439 aa31.34■■■□□ 2.61
UBE2D3-216ENST00000503742 ITSN2Q9NZM3 1697 aa31.34■■■□□ 2.61
UBE2D3-216ENST00000503742 ERCC6L2Q5T890 1561 aa31.34■■■□□ 2.61
UBE2D3-216ENST00000503742 GPATCH8Q9UKJ3 1502 aaKnown RBP31.3■■■□□ 2.6
UBE2D3-216ENST00000503742 GCC2Q8IWJ2 1684 aa31.3■■■□□ 2.6
UBE2D3-216ENST00000503742 UACAQ9BZF9 1416 aa31.3■■■□□ 2.6
UBE2D3-216ENST00000503742 PLEKHD1A6NEE1 506 aa31.3■■■□□ 2.6
UBE2D3-216ENST00000503742 DNMT1P26358 1616 aaKnown RBP31.29■■■□□ 2.6
UBE2D3-216ENST00000503742 ZNF316A6NFI3 1004 aaPredicted RBP31.28■■■□□ 2.6
UBE2D3-216ENST00000503742 ABCC10Q5T3U5 1492 aa31.26■■■□□ 2.59
UBE2D3-216ENST00000503742 DAPK1P53355 1430 aa31.25■■■□□ 2.59
UBE2D3-216ENST00000503742 ABCC5O15440 1437 aa31.23■■■□□ 2.59
UBE2D3-216ENST00000503742 ZNF644Q9H582 1327 aaPredicted RBP31.23■■■□□ 2.59
UBE2D3-216ENST00000503742 CHIC2Q9UKJ5 165 aa31.21■■■□□ 2.59
UBE2D3-216ENST00000503742 CAMSAP2Q08AD1 1489 aa31.21■■■□□ 2.59
UBE2D3-216ENST00000503742 CFDP1Q9UEE9 299 aaPredicted RBP31.2■■■□□ 2.59
UBE2D3-216ENST00000503742 ABCC2Q92887 1545 aa31.2■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms