RNA–Protein interactions for RNA: ENST00000502717.5

HMGXB3-201, Transcript of HMG-box containing 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGXB3, Length 4,974 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-201ENST00000502717 TMC1Q8TDI8 760 aa23.11■■□□□ 1.29
HMGXB3-201ENST00000502717 EIF4G2P78344 907 aaKnown RBP eCLIP23.1■■□□□ 1.295e-6■■□□□ 14.3
HMGXB3-201ENST00000502717 CCER2I3L3R5 266 aa23.1■■□□□ 1.29
HMGXB3-201ENST00000502717 NOP58Q9Y2X3 529 aaKnown RBP23.09■■□□□ 1.29
HMGXB3-201ENST00000502717 DDRGK1Q96HY6 314 aa23.03■■□□□ 1.28
HMGXB3-201ENST00000502717 TIMELESSQ9UNS1 1208 aa23.02■■□□□ 1.28
HMGXB3-201ENST00000502717 SMARCA2P51531 1590 aa23.02■■□□□ 1.28
HMGXB3-201ENST00000502717 DEKP35659 375 aaKnown RBP23.01■■□□□ 1.27
HMGXB3-201ENST00000502717 TOP2AP11388 1531 aaKnown RBP23■■□□□ 1.27
HMGXB3-201ENST00000502717 WIZO95785 1651 aa23■■□□□ 1.27
HMGXB3-201ENST00000502717 PPM1GO15355 546 aaPredicted RBP22.99■■□□□ 1.27
HMGXB3-201ENST00000502717 ZNF777Q9ULD5 760 aaPredicted RBP22.99■■□□□ 1.27
HMGXB3-201ENST00000502717 SOGA1O94964 1423 aa22.99■■□□□ 1.27
HMGXB3-201ENST00000502717 UPF2Q9HAU5 1272 aaKnown RBP22.98■■□□□ 1.27
HMGXB3-201ENST00000502717 ERICH6BQ5W0A0 696 aa22.97■■□□□ 1.27
HMGXB3-201ENST00000502717 MTUS2Q5JR59 1369 aa22.97■■□□□ 1.27
HMGXB3-201ENST00000502717 CHMP7Q8WUX9 453 aaPredicted RBP22.96■■□□□ 1.27
HMGXB3-201ENST00000502717 VPS8Q8N3P4 1428 aa22.96■■□□□ 1.27
HMGXB3-201ENST00000502717 STAG3Q9UJ98 1225 aa22.94■■□□□ 1.26
HMGXB3-201ENST00000502717 CCNB3Q8WWL7 1395 aa22.94■■□□□ 1.26
HMGXB3-201ENST00000502717 SIN3AQ96ST3 1273 aa22.94■■□□□ 1.26
HMGXB3-201ENST00000502717 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.93■■□□□ 1.26
HMGXB3-201ENST00000502717 SALL2Q9Y467 1007 aaPredicted RBP22.93■■□□□ 1.26
HMGXB3-201ENST00000502717 PLPPR3Q6T4P5 718 aa22.91■■□□□ 1.26
HMGXB3-201ENST00000502717 ANP32BQ92688 251 aaKnown RBP22.91■■□□□ 1.26
HMGXB3-201ENST00000502717 ABCC8Q09428 1581 aa22.9■■□□□ 1.26
HMGXB3-201ENST00000502717 CHIC2Q9UKJ5 165 aa22.89■■□□□ 1.26
HMGXB3-201ENST00000502717 B4GALNT3Q6L9W6 998 aa22.87■■□□□ 1.25
HMGXB3-201ENST00000502717 NEFMP07197 916 aa22.87■■□□□ 1.25
HMGXB3-201ENST00000502717 SMARCA4P51532 1647 aa22.82■■□□□ 1.24
HMGXB3-201ENST00000502717 RTN4Q9NQC3 1192 aaKnown RBP22.77■■□□□ 1.24
HMGXB3-201ENST00000502717 CUX2O14529 1486 aa22.76■■□□□ 1.23
HMGXB3-201ENST00000502717 ATAD2BQ9ULI0 1458 aa22.76■■□□□ 1.23
HMGXB3-201ENST00000502717 LAS1LQ9Y4W2 734 aaKnown RBP22.76■■□□□ 1.23
HMGXB3-201ENST00000502717 CARMIL1Q5VZK9 1371 aa22.75■■□□□ 1.23
HMGXB3-201ENST00000502717 SETD5Q9C0A6 1442 aa22.75■■□□□ 1.23
HMGXB3-201ENST00000502717 HSP90AA1P07900 732 aaKnown RBP22.74■■□□□ 1.23
HMGXB3-201ENST00000502717 BECN1Q14457 450 aa22.73■■□□□ 1.23
HMGXB3-201ENST00000502717 RRP7BPQ9NSQ0 103 aa22.73■■□□□ 1.23
HMGXB3-201ENST00000502717 WDR43Q15061 677 aaKnown RBP eCLIP22.7■■□□□ 1.22
HMGXB3-201ENST00000502717 CHGAP10645 457 aaKnown RBP22.69■■□□□ 1.22
HMGXB3-201ENST00000502717 ERCC6Q03468 1493 aa22.68■■□□□ 1.22
HMGXB3-201ENST00000502717 FHAD1B1AJZ9 1412 aa22.68■■□□□ 1.22
HMGXB3-201ENST00000502717 TSPY4P0CV99 314 aa22.67■■□□□ 1.22
HMGXB3-201ENST00000502717 TSPY10P0CW01 314 aa22.67■■□□□ 1.22
HMGXB3-201ENST00000502717 DHX57Q6P158 1386 aaKnown RBP22.67■■□□□ 1.22
HMGXB3-201ENST00000502717 ARXQ96QS3 562 aa22.67■■□□□ 1.22
HMGXB3-201ENST00000502717 SLC24A1O60721 1099 aa22.65■■□□□ 1.22
HMGXB3-201ENST00000502717 KANK4Q5T7N3 995 aaPredicted RBP22.65■■□□□ 1.22
HMGXB3-201ENST00000502717 FANCIQ9NVI1 1328 aa22.65■■□□□ 1.22
HMGXB3-201ENST00000502717 RAB3GAP2Q9H2M9 1393 aa22.65■■□□□ 1.22
HMGXB3-201ENST00000502717 PPP1R15AO75807 674 aaPredicted RBP22.6■■□□□ 1.21
HMGXB3-201ENST00000502717 KCNH8Q96L42 1107 aa22.59■■□□□ 1.21
HMGXB3-201ENST00000502717 KDM2AQ9Y2K7 1162 aa22.58■■□□□ 1.21
HMGXB3-201ENST00000502717 CADPSQ9ULU8 1353 aa22.58■■□□□ 1.2
HMGXB3-201ENST00000502717 IPO9Q96P70 1041 aaKnown RBP22.57■■□□□ 1.2
HMGXB3-201ENST00000502717 PLEKHD1A6NEE1 506 aa22.56■■□□□ 1.2
HMGXB3-201ENST00000502717 TRIM44Q96DX7 344 aaPredicted RBP22.55■■□□□ 1.2
HMGXB3-201ENST00000502717 HSPA5P11021 654 aaKnown RBP22.54■■□□□ 1.2
HMGXB3-201ENST00000502717 TRHP20396 242 aaPredicted RBP22.54■■□□□ 1.2
HMGXB3-201ENST00000502717 PDS5BQ9NTI5 1447 aa22.53■■□□□ 1.2
HMGXB3-201ENST00000502717 SENP3-EIF4A1A0A087X0R7 540 aa22.52■■□□□ 1.2
HMGXB3-201ENST00000502717 TCERG1O14776 1098 aaKnown RBP22.49■■□□□ 1.19
HMGXB3-201ENST00000502717 ARID4BQ4LE39 1312 aaPredicted RBP22.48■■□□□ 1.19
HMGXB3-201ENST00000502717 CFDP1Q9UEE9 299 aaPredicted RBP22.45■■□□□ 1.18
HMGXB3-201ENST00000502717 NAP1L5Q96NT1 182 aaPredicted RBP22.44■■□□□ 1.18
HMGXB3-201ENST00000502717 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.44■■□□□ 1.183e-7■□□□□ 9.5
HMGXB3-201ENST00000502717 CARD11Q9BXL7 1154 aa22.44■■□□□ 1.18
HMGXB3-201ENST00000502717 USP35Q9P2H5 1018 aa22.41■■□□□ 1.18
HMGXB3-201ENST00000502717 ARHGAP35Q9NRY4 1499 aa22.4■■□□□ 1.18
HMGXB3-201ENST00000502717 L1TD1Q5T7N2 865 aaKnown RBP22.4■■□□□ 1.18
HMGXB3-201ENST00000502717 RAPGEF2Q9Y4G8 1499 aa22.39■■□□□ 1.18
HMGXB3-201ENST00000502717 RGS3P49796 1198 aa22.39■■□□□ 1.18
HMGXB3-201ENST00000502717 NUDCQ9Y266 331 aa22.39■■□□□ 1.18
HMGXB3-201ENST00000502717 RUSC2Q8N2Y8 1516 aa22.38■■□□□ 1.17
HMGXB3-201ENST00000502717 GOLGA6L22H0YM25 854 aa22.37■■□□□ 1.17
HMGXB3-201ENST00000502717 EIF4G1Q04637 1599 aaKnown RBP22.37■■□□□ 1.17
HMGXB3-201ENST00000502717 TDRD9Q8NDG6 1382 aaKnown RBP22.37■■□□□ 1.17
HMGXB3-201ENST00000502717 C14orf37Q86TY3 774 aa22.33■■□□□ 1.17
HMGXB3-201ENST00000502717 FMN1Q68DA7 1419 aa22.33■■□□□ 1.17
HMGXB3-201ENST00000502717 RCAN3Q9UKA8 241 aa22.31■■□□□ 1.16
HMGXB3-201ENST00000502717 NCAPD3P42695 1498 aa22.3■■□□□ 1.16
HMGXB3-201ENST00000502717 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.3■■□□□ 1.16
HMGXB3-201ENST00000502717 KNSTRNQ9Y448 316 aa22.3■■□□□ 1.16
HMGXB3-201ENST00000502717 CDCA8Q53HL2 280 aa22.27■■□□□ 1.16
HMGXB3-201ENST00000502717 ZBED9Q6R2W3 1325 aa22.26■■□□□ 1.15
HMGXB3-201ENST00000502717 FANCD2Q9BXW9 1451 aa22.24■■□□□ 1.15
HMGXB3-201ENST00000502717 RALBP1Q15311 655 aa22.2■■□□□ 1.14
HMGXB3-201ENST00000502717 TNNT2P45379 298 aaPredicted RBP22.19■■□□□ 1.14
HMGXB3-201ENST00000502717 RGL3Q3MIN7 710 aa22.19■■□□□ 1.14
HMGXB3-201ENST00000502717 MYH16Q9H6N6 1097 aa22.19■■□□□ 1.14
HMGXB3-201ENST00000502717 PRKRIP1Q9H875 184 aaPredicted RBP22.18■■□□□ 1.14
HMGXB3-201ENST00000502717 PDE3BQ13370 1112 aa22.17■■□□□ 1.14
HMGXB3-201ENST00000502717 MPHOSPH9Q99550 1183 aa22.17■■□□□ 1.14
HMGXB3-201ENST00000502717 CC2D1BQ5T0F9 858 aaKnown RBP22.17■■□□□ 1.14
HMGXB3-201ENST00000502717 HAP1P54257 671 aaPredicted RBP22.16■■□□□ 1.14
HMGXB3-201ENST00000502717 CARMIL2Q6F5E8 1435 aa22.16■■□□□ 1.14
HMGXB3-201ENST00000502717 PDE4AP27815 886 aa22.15■■□□□ 1.14
HMGXB3-201ENST00000502717 A0A0G2JS52 829 aa22.14■■□□□ 1.14
HMGXB3-201ENST00000502717 GSE1Q14687 1217 aa22.14■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms