RNA–Protein interactions for RNA: ENST00000496574.6

PKD1-222, Transcript of polycystin 1, transient receptor potential channel interacting, human

TSL 5

Gene PKD1, Length 4,419 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PKD1-222	ENST00000496574	CCER2	I3L3R5	266 aa		18.89	■□□□□ 0.62
PKD1-222	ENST00000496574	CEP164	Q9UPV0	1460 aa		18.89	■□□□□ 0.61
PKD1-222	ENST00000496574	NEFM	P07197	916 aa		18.89	■□□□□ 0.61
PKD1-222	ENST00000496574	B4GALNT3	Q6L9W6	998 aa		18.89	■□□□□ 0.61
PKD1-222	ENST00000496574	ARX	Q96QS3	562 aa		18.86	■□□□□ 0.61
PKD1-222	ENST00000496574	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	18.86	■□□□□ 0.61
PKD1-222	ENST00000496574	WRN	Q14191	1432 aa	Predicted RBP eCLIP	18.84	■□□□□ 0.61
PKD1-222	ENST00000496574	HSP90AA1	P07900	732 aa	Known RBP	18.83	■□□□□ 0.6
PKD1-222	ENST00000496574	ZNF777	Q9ULD5	760 aa	Predicted RBP	18.83	■□□□□ 0.6
PKD1-222	ENST00000496574	LAS1L	Q9Y4W2	734 aa	Known RBP	18.82	■□□□□ 0.6
PKD1-222	ENST00000496574	MTUS2	Q5JR59	1369 aa		18.81	■□□□□ 0.6
PKD1-222	ENST00000496574	TIMELESS	Q9UNS1	1208 aa		18.79	■□□□□ 0.6
PKD1-222	ENST00000496574	SOGA1	O94964	1423 aa		18.78	■□□□□ 0.6
PKD1-222	ENST00000496574	CCNB3	Q8WWL7	1395 aa		18.77	■□□□□ 0.6
PKD1-222	ENST00000496574	ERICH6B	Q5W0A0	696 aa		18.77	■□□□□ 0.6
PKD1-222	ENST00000496574	SENP3-EIF4A1	A0A087X0R7	540 aa		18.75	■□□□□ 0.59
PKD1-222	ENST00000496574	RRP7BP	Q9NSQ0	103 aa		18.74	■□□□□ 0.59
PKD1-222	ENST00000496574	VPS8	Q8N3P4	1428 aa		18.72	■□□□□ 0.59
PKD1-222	ENST00000496574	NACAD	O15069	1562 aa		18.72	■□□□□ 0.59
PKD1-222	ENST00000496574	WDR43	Q15061	677 aa	Known RBP eCLIP	18.71	■□□□□ 0.59
PKD1-222	ENST00000496574	BECN1	Q14457	450 aa		18.71	■□□□□ 0.59
PKD1-222	ENST00000496574	KDM2A	Q9Y2K7	1162 aa		18.67	■□□□□ 0.58
PKD1-222	ENST00000496574	FBLN2	P98095	1184 aa		18.66	■□□□□ 0.58
PKD1-222	ENST00000496574	CECR2	Q9BXF3	1484 aa		18.64	■□□□□ 0.57
PKD1-222	ENST00000496574	KCNH8	Q96L42	1107 aa		18.63	■□□□□ 0.57
PKD1-222	ENST00000496574	TRIM44	Q96DX7	344 aa	Predicted RBP	18.62	■□□□□ 0.57
PKD1-222	ENST00000496574	KANK4	Q5T7N3	995 aa	Predicted RBP	18.59	■□□□□ 0.57
PKD1-222	ENST00000496574	SETD5	Q9C0A6	1442 aa		18.59	■□□□□ 0.57
PKD1-222	ENST00000496574	CCDC88B	A6NC98	1476 aa		18.58	■□□□□ 0.56
PKD1-222	ENST00000496574	KIF27	Q86VH2	1401 aa		18.56	■□□□□ 0.56
PKD1-222	ENST00000496574	NAP1L5	Q96NT1	182 aa	Predicted RBP	18.55	■□□□□ 0.56
PKD1-222	ENST00000496574	RAB3GAP2	Q9H2M9	1393 aa		18.55	■□□□□ 0.56
PKD1-222	ENST00000496574	IPO9	Q96P70	1041 aa	Known RBP	18.54	■□□□□ 0.56
PKD1-222	ENST00000496574	FANCI	Q9NVI1	1328 aa		18.54	■□□□□ 0.56
PKD1-222	ENST00000496574	RGS3	P49796	1198 aa		18.53	■□□□□ 0.56
PKD1-222	ENST00000496574	PPP1R15A	O75807	674 aa	Predicted RBP	18.52	■□□□□ 0.56
PKD1-222	ENST00000496574	DHX57	Q6P158	1386 aa	Known RBP	18.52	■□□□□ 0.56
PKD1-222	ENST00000496574	HSPA5	P11021	654 aa	Known RBP	18.52	■□□□□ 0.55
PKD1-222	ENST00000496574	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	18.5	■□□□□ 0.55
PKD1-222	ENST00000496574	ABCC8	Q09428	1581 aa		18.5	■□□□□ 0.55
PKD1-222	ENST00000496574	TSPY4	P0CV99	314 aa		18.5	■□□□□ 0.55
PKD1-222	ENST00000496574	TSPY10	P0CW01	314 aa		18.5	■□□□□ 0.55
PKD1-222	ENST00000496574	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	18.48	■□□□□ 0.55
PKD1-222	ENST00000496574	CARD11	Q9BXL7	1154 aa		18.48	■□□□□ 0.55
PKD1-222	ENST00000496574	TCERG1	O14776	1098 aa	Known RBP	18.46	■□□□□ 0.55
PKD1-222	ENST00000496574	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	18.45	■□□□□ 0.54
PKD1-222	ENST00000496574	MROH2B	Q7Z745	1585 aa		18.45	■□□□□ 0.54
PKD1-222	ENST00000496574	GOLGA6L22	H0YM25	854 aa		18.44	■□□□□ 0.54
PKD1-222	ENST00000496574	FHAD1	B1AJZ9	1412 aa		18.42	■□□□□ 0.54
PKD1-222	ENST00000496574	L1TD1	Q5T7N2	865 aa	Known RBP	18.4	■□□□□ 0.54
PKD1-222	ENST00000496574	NUDC	Q9Y266	331 aa		18.38	■□□□□ 0.53
PKD1-222	ENST00000496574	SLC24A1	O60721	1099 aa		18.37	■□□□□ 0.53
PKD1-222	ENST00000496574	USP35	Q9P2H5	1018 aa		18.37	■□□□□ 0.53
PKD1-222	ENST00000496574	KNSTRN	Q9Y448	316 aa		18.36	■□□□□ 0.53
PKD1-222	ENST00000496574	RGL3	Q3MIN7	710 aa		18.36	■□□□□ 0.53
PKD1-222	ENST00000496574	RCAN3	Q9UKA8	241 aa		18.36	■□□□□ 0.53
PKD1-222	ENST00000496574	CHGA	P10645	457 aa	Known RBP	18.34	■□□□□ 0.53
PKD1-222	ENST00000496574	BAZ1B	Q9UIG0	1483 aa	Known RBP	18.33	■□□□□ 0.52
PKD1-222	ENST00000496574	NCL	P19338	710 aa	Known RBP	18.32	■□□□□ 0.52
PKD1-222	ENST00000496574	TNNT2	P45379	298 aa	Predicted RBP	18.31	■□□□□ 0.52
PKD1-222	ENST00000496574	MYH16	Q9H6N6	1097 aa		18.31	■□□□□ 0.52
PKD1-222	ENST00000496574	CC2D1B	Q5T0F9	858 aa	Known RBP	18.29	■□□□□ 0.52
PKD1-222	ENST00000496574	CDCA8	Q53HL2	280 aa		18.29	■□□□□ 0.52
PKD1-222	ENST00000496574	ARHGAP35	Q9NRY4	1499 aa		18.28	■□□□□ 0.52
PKD1-222	ENST00000496574	PNN	Q9H307	717 aa	Known RBP	18.28	■□□□□ 0.52
PKD1-222	ENST00000496574	FRAT1	Q92837	279 aa	Predicted RBP	18.27	■□□□□ 0.52
PKD1-222	ENST00000496574	CFDP1	Q9UEE9	299 aa	Predicted RBP	18.27	■□□□□ 0.51
PKD1-222	ENST00000496574	PTMA	P06454	111 aa	Known RBP	18.26	■□□□□ 0.51
PKD1-222	ENST00000496574	FTSJ3	Q8IY81	847 aa	Known RBP	18.26	■□□□□ 0.51
PKD1-222	ENST00000496574	CARMIL1	Q5VZK9	1371 aa		18.25	■□□□□ 0.51
PKD1-222	ENST00000496574	DNTTIP2	Q5QJE6	756 aa	Known RBP	18.24	■□□□□ 0.51
PKD1-222	ENST00000496574	ZBED9	Q6R2W3	1325 aa		18.24	■□□□□ 0.51
PKD1-222	ENST00000496574	NEUROD2	Q15784	382 aa		18.23	■□□□□ 0.51
PKD1-222	ENST00000496574	RUSC2	Q8N2Y8	1516 aa		18.22	■□□□□ 0.51
PKD1-222	ENST00000496574	PDE4A	P27815	886 aa		18.22	■□□□□ 0.51
PKD1-222	ENST00000496574	SLK	Q9H2G2	1235 aa	Predicted RBP	18.22	■□□□□ 0.51
PKD1-222	ENST00000496574	PRKRIP1	Q9H875	184 aa	Predicted RBP	18.21	■□□□□ 0.51
PKD1-222	ENST00000496574	FOXD1	Q16676	465 aa		18.21	■□□□□ 0.51
PKD1-222	ENST00000496574	RAPGEF2	Q9Y4G8	1499 aa		18.21	■□□□□ 0.51
PKD1-222	ENST00000496574	GSE1	Q14687	1217 aa		18.21	■□□□□ 0.51
PKD1-222	ENST00000496574	HSP90AB1	P08238	724 aa	Known RBP	18.2	■□□□□ 0.5
PKD1-222	ENST00000496574	L3MBTL2	Q969R5	705 aa		18.2	■□□□□ 0.5
PKD1-222	ENST00000496574	RALBP1	Q15311	655 aa		18.19	■□□□□ 0.5
PKD1-222	ENST00000496574	HSCB	Q8IWL3	235 aa		18.19	■□□□□ 0.5
PKD1-222	ENST00000496574	CFAP53	Q96M91	514 aa		18.19	■□□□□ 0.5
PKD1-222	ENST00000496574	MPHOSPH9	Q99550	1183 aa		18.19	■□□□□ 0.5
PKD1-222	ENST00000496574	DCAF11	Q8TEB1	546 aa		18.18	■□□□□ 0.5
PKD1-222	ENST00000496574	SPRYD3	Q8NCJ5	442 aa		18.18	■□□□□ 0.5
PKD1-222	ENST00000496574	WIZ	O95785	1651 aa		18.17	■□□□□ 0.5
PKD1-222	ENST00000496574	RSPH6A	Q9H0K4	717 aa		18.17	■□□□□ 0.5
PKD1-222	ENST00000496574	KTN1	Q86UP2	1357 aa	Known RBP	18.17	■□□□□ 0.5
PKD1-222	ENST00000496574	CUX2	O14529	1486 aa		18.16	■□□□□ 0.5
PKD1-222	ENST00000496574	GZF1	Q9H116	711 aa	Predicted RBP	18.16	■□□□□ 0.5
PKD1-222	ENST00000496574	PDE3B	Q13370	1112 aa		18.16	■□□□□ 0.5
PKD1-222	ENST00000496574	FMN1	Q68DA7	1419 aa		18.16	■□□□□ 0.5
PKD1-222	ENST00000496574	ARID4B	Q4LE39	1312 aa	Predicted RBP	18.15	■□□□□ 0.5
PKD1-222	ENST00000496574	MSN	P26038	577 aa	Known RBP	18.15	■□□□□ 0.5
PKD1-222	ENST00000496574	PLEKHD1	A6NEE1	506 aa		18.15	■□□□□ 0.5
PKD1-222	ENST00000496574	TMF1	P82094	1093 aa		18.14	■□□□□ 0.49
PKD1-222	ENST00000496574	GOLGA6L3	A6NEY3	463 aa		18.12	■□□□□ 0.49

Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms