RNA–Protein interactions for RNA: ENST00000490035.6

LSAMP-205, Transcript of limbic system associated membrane protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSAMP, Length 9,446 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-205ENST00000490035 CHGAP10645 457 aaKnown RBP11.64□□□□□ -0.55
LSAMP-205ENST00000490035 CASC1Q6TDU7 716 aa11.64□□□□□ -0.55
LSAMP-205ENST00000490035 MRS2Q9HD23 443 aa11.64□□□□□ -0.55
LSAMP-205ENST00000490035 CFAP53Q96M91 514 aa11.62□□□□□ -0.55
LSAMP-205ENST00000490035 CFAP44Q96MT7 982 aa11.62□□□□□ -0.55
LSAMP-205ENST00000490035 MS4A1P11836 297 aa11.62□□□□□ -0.55
LSAMP-205ENST00000490035 TRIM44Q96DX7 344 aaPredicted RBP11.61□□□□□ -0.55
LSAMP-205ENST00000490035 KIF27Q86VH2 1401 aa11.61□□□□□ -0.55
LSAMP-205ENST00000490035 PNNQ9H307 717 aaKnown RBP11.61□□□□□ -0.55
LSAMP-205ENST00000490035 BCL11AQ9H165 835 aa11.61□□□□□ -0.55
LSAMP-205ENST00000490035 FHAD1B1AJZ9 1412 aa11.6□□□□□ -0.55
LSAMP-205ENST00000490035 BAZ1AQ9NRL2 1556 aaPredicted RBP11.6□□□□□ -0.55
LSAMP-205ENST00000490035 TNNT2P45379 298 aaPredicted RBP11.59□□□□□ -0.55
LSAMP-205ENST00000490035 CHMP7Q8WUX9 453 aaPredicted RBP11.59□□□□□ -0.55
LSAMP-205ENST00000490035 BAZ1BQ9UIG0 1483 aaKnown RBP11.58□□□□□ -0.56
LSAMP-205ENST00000490035 TIMELESSQ9UNS1 1208 aa11.57□□□□□ -0.56
LSAMP-205ENST00000490035 PPM1GO15355 546 aaPredicted RBP11.56□□□□□ -0.56
LSAMP-205ENST00000490035 ZRSR1Q15695 479 aaKnown RBP11.55□□□□□ -0.56
LSAMP-205ENST00000490035 PLEKHD1A6NEE1 506 aa11.55□□□□□ -0.56
LSAMP-205ENST00000490035 CEP162Q5TB80 1403 aa11.55□□□□□ -0.56
LSAMP-205ENST00000490035 TNIKQ9UKE5 1360 aa11.55□□□□□ -0.56
LSAMP-205ENST00000490035 ARID3CA6NKF2 412 aa11.54□□□□□ -0.56
LSAMP-205ENST00000490035 WRNQ14191 1432 aaPredicted RBP eCLIP11.53□□□□□ -0.56
LSAMP-205ENST00000490035 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.53□□□□□ -0.56
LSAMP-205ENST00000490035 KNSTRNQ9Y448 316 aa11.53□□□□□ -0.56
LSAMP-205ENST00000490035 HAP1P54257 671 aaPredicted RBP11.52□□□□□ -0.57
LSAMP-205ENST00000490035 ERICH6BQ5W0A0 696 aa11.51□□□□□ -0.57
LSAMP-205ENST00000490035 NUDCQ9Y266 331 aa11.5□□□□□ -0.57
LSAMP-205ENST00000490035 GOLGA6L6A8MZA4 724 aa11.5□□□□□ -0.57
LSAMP-205ENST00000490035 NRDCO43847 1150 aa11.49□□□□□ -0.57
LSAMP-205ENST00000490035 CHIC2Q9UKJ5 165 aa11.49□□□□□ -0.57
LSAMP-205ENST00000490035 ARID4BQ4LE39 1312 aaPredicted RBP11.48□□□□□ -0.57
LSAMP-205ENST00000490035 FTSJ3Q8IY81 847 aaKnown RBP11.48□□□□□ -0.57
LSAMP-205ENST00000490035 KDM2AQ9Y2K7 1162 aa11.48□□□□□ -0.57
LSAMP-205ENST00000490035 PPP1R15AO75807 674 aaPredicted RBP11.47□□□□□ -0.57
LSAMP-205ENST00000490035 PTMSP20962 102 aa11.47□□□□□ -0.57
LSAMP-205ENST00000490035 NBR1Q14596 966 aa11.45□□□□□ -0.58
LSAMP-205ENST00000490035 KANK1Q14678 1352 aa11.45□□□□□ -0.58
LSAMP-205ENST00000490035 HDGFP51858 240 aaKnown RBP11.45□□□□□ -0.58
LSAMP-205ENST00000490035 CHMP4AQ9BY43 222 aa11.44□□□□□ -0.58
LSAMP-205ENST00000490035 SALL2Q9Y467 1007 aaPredicted RBP11.44□□□□□ -0.58
LSAMP-205ENST00000490035 MAPK8IP3Q9UPT6 1336 aa11.44□□□□□ -0.58
LSAMP-205ENST00000490035 CFDP1Q9UEE9 299 aaPredicted RBP11.44□□□□□ -0.58
LSAMP-205ENST00000490035 PPP4R2Q9NY27 417 aa11.43□□□□□ -0.58
LSAMP-205ENST00000490035 L1TD1Q5T7N2 865 aaKnown RBP11.42□□□□□ -0.58
LSAMP-205ENST00000490035 SMARCA2P51531 1590 aa11.41□□□□□ -0.58
LSAMP-205ENST00000490035 MIER1Q8N108 512 aa11.41□□□□□ -0.58
LSAMP-205ENST00000490035 PTMAP06454 111 aaKnown RBP11.41□□□□□ -0.58
LSAMP-205ENST00000490035 CARD11Q9BXL7 1154 aa11.4□□□□□ -0.58
LSAMP-205ENST00000490035 CCER2I3L3R5 266 aa11.38□□□□□ -0.59
LSAMP-205ENST00000490035 CCNB3Q8WWL7 1395 aa11.38□□□□□ -0.59
LSAMP-205ENST00000490035 RRP7BPQ9NSQ0 103 aa11.38□□□□□ -0.59
LSAMP-205ENST00000490035 MCCP23508 829 aa11.37□□□□□ -0.59
LSAMP-205ENST00000490035 TMF1P82094 1093 aa11.37□□□□□ -0.59
LSAMP-205ENST00000490035 CHAF1AQ13111 956 aaPredicted RBP11.36□□□□□ -0.59
LSAMP-205ENST00000490035 CALD1Q05682 793 aaKnown RBP11.36□□□□□ -0.59
LSAMP-205ENST00000490035 DNTTIP2Q5QJE6 756 aaKnown RBP11.36□□□□□ -0.59
LSAMP-205ENST00000490035 ARHGAP35Q9NRY4 1499 aa11.36□□□□□ -0.59
LSAMP-205ENST00000490035 ERCC6Q03468 1493 aa11.34□□□□□ -0.59
LSAMP-205ENST00000490035 SCAF1Q9H7N4 1312 aaKnown RBP11.34□□□□□ -0.59
LSAMP-205ENST00000490035 C14orf37Q86TY3 774 aa11.34□□□□□ -0.59
LSAMP-205ENST00000490035 HSP90AB1P08238 724 aaKnown RBP11.32□□□□□ -0.6
LSAMP-205ENST00000490035 HDAC5Q9UQL6 1122 aa11.32□□□□□ -0.6
LSAMP-205ENST00000490035 FMN1Q68DA7 1419 aa11.31□□□□□ -0.6
LSAMP-205ENST00000490035 NOP58Q9Y2X3 529 aaKnown RBP11.31□□□□□ -0.6
LSAMP-205ENST00000490035 POGKQ9P215 609 aa11.31□□□□□ -0.6
LSAMP-205ENST00000490035 HSCBQ8IWL3 235 aa11.31□□□□□ -0.6
LSAMP-205ENST00000490035 IPO8O15397 1037 aaKnown RBP11.31□□□□□ -0.6
LSAMP-205ENST00000490035 CARMIL2Q6F5E8 1435 aa11.31□□□□□ -0.6
LSAMP-205ENST00000490035 SETD5Q9C0A6 1442 aa11.3□□□□□ -0.6
LSAMP-205ENST00000490035 EIF3AQ14152 1382 aaKnown RBP11.3□□□□□ -0.6
LSAMP-205ENST00000490035 PHLDB1Q86UU1 1377 aa11.29□□□□□ -0.6
LSAMP-205ENST00000490035 SUPT16HQ9Y5B9 1047 aaKnown RBP11.29□□□□□ -0.6
LSAMP-205ENST00000490035 MYO15BQ96JP2 1530 aa11.29□□□□□ -0.6
LSAMP-205ENST00000490035 VPS8Q8N3P4 1428 aa11.28□□□□□ -0.6
LSAMP-205ENST00000490035 HTATSF1O43719 755 aaKnown RBP11.28□□□□□ -0.6
LSAMP-205ENST00000490035 USP35Q9P2H5 1018 aa11.28□□□□□ -0.6
LSAMP-205ENST00000490035 FGD1P98174 961 aa11.28□□□□□ -0.6
LSAMP-205ENST00000490035 GOLGA6L4A6NEF3 574 aa11.27□□□□□ -0.6
LSAMP-205ENST00000490035 ARXQ96QS3 562 aa11.27□□□□□ -0.6
LSAMP-205ENST00000490035 KCNH8Q96L42 1107 aa11.27□□□□□ -0.61
LSAMP-205ENST00000490035 RGL3Q3MIN7 710 aa11.26□□□□□ -0.61
LSAMP-205ENST00000490035 ROCK2O75116 1388 aaKnown RBP11.26□□□□□ -0.61
LSAMP-205ENST00000490035 RALBP1Q15311 655 aa11.26□□□□□ -0.61
LSAMP-205ENST00000490035 KTN1Q86UP2 1357 aaKnown RBP11.26□□□□□ -0.61
LSAMP-205ENST00000490035 KCNJ4P48050 445 aa11.26□□□□□ -0.61
LSAMP-205ENST00000490035 MSNP26038 577 aaKnown RBP11.26□□□□□ -0.61
LSAMP-205ENST00000490035 OS9Q13438 667 aaPredicted RBP11.26□□□□□ -0.61
LSAMP-205ENST00000490035 CCDC34Q96HJ3 373 aa11.26□□□□□ -0.61
LSAMP-205ENST00000490035 GOLGA2Q08379 1002 aa11.25□□□□□ -0.61
LSAMP-205ENST00000490035 CARMIL1Q5VZK9 1371 aa11.25□□□□□ -0.61
LSAMP-205ENST00000490035 RSPH4AQ5TD94 716 aa11.25□□□□□ -0.61
LSAMP-205ENST00000490035 SYAP1Q96A49 352 aaPredicted RBP11.25□□□□□ -0.61
LSAMP-205ENST00000490035 GBP4Q96PP9 640 aa11.24□□□□□ -0.61
LSAMP-205ENST00000490035 EIF4G1Q04637 1599 aaKnown RBP11.24□□□□□ -0.61
LSAMP-205ENST00000490035 PLPPR3Q6T4P5 718 aa11.23□□□□□ -0.61
LSAMP-205ENST00000490035 CSPP1Q1MSJ5 1256 aa11.22□□□□□ -0.61
LSAMP-205ENST00000490035 IRX6P78412 446 aaPredicted RBP11.22□□□□□ -0.61
LSAMP-205ENST00000490035 CUX2O14529 1486 aa11.22□□□□□ -0.61
LSAMP-205ENST00000490035 PDS5BQ9NTI5 1447 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms