RNA–Protein interactions for RNA: ENST00000489406.1

UFD1-209, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 2

Gene UFD1, Length 994 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-209ENST00000489406 ADAMTS12P58397 1594 aa28.28■■■□□ 2.12
UFD1-209ENST00000489406 HECW2Q9P2P5 1572 aa28.28■■■□□ 2.12
UFD1-209ENST00000489406 TSPOAP1O95153 1857 aa28.27■■■□□ 2.12
UFD1-209ENST00000489406 ADGRL1O94910 1474 aa28.26■■■□□ 2.11
UFD1-209ENST00000489406 JPH4Q96JJ6 628 aa28.22■■■□□ 2.11
UFD1-209ENST00000489406 FHAD1B1AJZ9 1412 aa28.18■■■□□ 2.1
UFD1-209ENST00000489406 FBXO41Q8TF61 875 aa28.17■■■□□ 2.1
UFD1-209ENST00000489406 ADCY10Q96PN6 1610 aa28.13■■■□□ 2.09
UFD1-209ENST00000489406 WRNQ14191 1432 aaPredicted RBP eCLIP28■■■□□ 2.07
UFD1-209ENST00000489406 ERICH3Q5RHP9 1530 aa27.94■■■□□ 2.06
UFD1-209ENST00000489406 RUSC2Q8N2Y8 1516 aa27.92■■■□□ 2.06
UFD1-209ENST00000489406 PPRC1Q5VV67 1664 aaKnown RBP27.88■■■□□ 2.05
UFD1-209ENST00000489406 COL17A1Q9UMD9 1497 aaPredicted RBP27.87■■■□□ 2.05
UFD1-209ENST00000489406 LMTK3Q96Q04 1460 aa27.82■■■□□ 2.04
UFD1-209ENST00000489406 TTBK1Q5TCY1 1321 aaPredicted RBP27.77■■■□□ 2.04
UFD1-209ENST00000489406 GLI2P10070 1586 aa27.77■■■□□ 2.04
UFD1-209ENST00000489406 ASXL2Q76L83 1435 aa27.76■■■□□ 2.04
UFD1-209ENST00000489406 PLB1Q6P1J6 1458 aa27.72■■■□□ 2.03
UFD1-209ENST00000489406 PTPRGP23470 1445 aa27.71■■■□□ 2.03
UFD1-209ENST00000489406 TOP2BQ02880 1626 aa27.7■■■□□ 2.02
UFD1-209ENST00000489406 ABCC2Q92887 1545 aa27.69■■■□□ 2.02
UFD1-209ENST00000489406 BIVM-ERCC5R4GMW8 1640 aa27.69■■■□□ 2.02
UFD1-209ENST00000489406 KIAA0586Q9BVV6 1533 aa27.67■■■□□ 2.02
UFD1-209ENST00000489406 TEX14Q8IWB6 1497 aa27.61■■■□□ 2.01
UFD1-209ENST00000489406 MAP3K4Q9Y6R4 1608 aa27.58■■■□□ 2.01
UFD1-209ENST00000489406 CUL7Q14999 1698 aa27.57■■■□□ 2
UFD1-209ENST00000489406 SOCS7O14512 581 aa27.57■■■□□ 2
UFD1-209ENST00000489406 EPRSP07814 1512 aaKnown RBP27.57■■■□□ 2
UFD1-209ENST00000489406 ILDR2Q71H61 639 aa27.56■■■□□ 2
UFD1-209ENST00000489406 TNIKQ9UKE5 1360 aa27.52■■■□□ 2
UFD1-209ENST00000489406 UHRF1BP1LA0JNW5 1464 aa27.46■■□□□ 1.99
UFD1-209ENST00000489406 DISP3Q9P2K9 1392 aa27.45■■□□□ 1.98
UFD1-209ENST00000489406 CARMIL2Q6F5E8 1435 aa27.44■■□□□ 1.98
UFD1-209ENST00000489406 UACAQ9BZF9 1416 aa27.42■■□□□ 1.98
UFD1-209ENST00000489406 KIF21BO75037 1637 aa27.41■■□□□ 1.98
UFD1-209ENST00000489406 KDM5BQ9UGL1 1544 aa27.37■■□□□ 1.97
UFD1-209ENST00000489406 PTPRMP28827 1452 aa27.36■■□□□ 1.97
UFD1-209ENST00000489406 IGF1RP08069 1367 aa27.35■■□□□ 1.97
UFD1-209ENST00000489406 ZCCHC11Q5TAX3 1644 aaKnown RBP27.31■■□□□ 1.96
UFD1-209ENST00000489406 CERKQ8TCT0 537 aa27.28■■□□□ 1.96
UFD1-209ENST00000489406 PCF11O94913 1555 aaKnown RBP27.27■■□□□ 1.96
UFD1-209ENST00000489406 CD109Q6YHK3 1445 aa27.26■■□□□ 1.95
UFD1-209ENST00000489406 WDR7Q9Y4E6 1490 aa27.25■■□□□ 1.95
UFD1-209ENST00000489406 MAGI3Q5TCQ9 1506 aa27.24■■□□□ 1.95
UFD1-209ENST00000489406 ADAMTSL3P82987 1691 aa27.23■■□□□ 1.95
UFD1-209ENST00000489406 KCNH8Q96L42 1107 aa27.2■■□□□ 1.94
UFD1-209ENST00000489406 DISP1Q96F81 1524 aa27.2■■□□□ 1.94
UFD1-209ENST00000489406 IQGAP2Q13576 1575 aa27.19■■□□□ 1.94
UFD1-209ENST00000489406 HSPA2P54652 639 aa27.17■■□□□ 1.94
UFD1-209ENST00000489406 KIF27Q86VH2 1401 aa27.16■■□□□ 1.94
UFD1-209ENST00000489406 CFAP43Q8NDM7 1665 aa27.15■■□□□ 1.94
UFD1-209ENST00000489406 CARMIL1Q5VZK9 1371 aa27.13■■□□□ 1.93
UFD1-209ENST00000489406 SUPT5HO00267 1087 aaKnown RBP27.09■■□□□ 1.93
UFD1-209ENST00000489406 ARAP3Q8WWN8 1544 aa27.07■■□□□ 1.92
UFD1-209ENST00000489406 MADDQ8WXG6 1647 aa27.07■■□□□ 1.92
UFD1-209ENST00000489406 ARID4BQ4LE39 1312 aaPredicted RBP27.06■■□□□ 1.92
UFD1-209ENST00000489406 SPATA31D1Q6ZQQ2 1576 aa27.04■■□□□ 1.92
UFD1-209ENST00000489406 BCORL1Q5H9F3 1711 aa27.04■■□□□ 1.92
UFD1-209ENST00000489406 PLPPR3Q6T4P5 718 aa27■■□□□ 1.91
UFD1-209ENST00000489406 RAPGEF3O95398 923 aa26.98■■□□□ 1.91
UFD1-209ENST00000489406 UGGT2Q9NYU1 1516 aa26.97■■□□□ 1.91
UFD1-209ENST00000489406 KIAA0556O60303 1618 aa26.97■■□□□ 1.91
UFD1-209ENST00000489406 RIMS1Q86UR5 1692 aaKnown RBP26.94■■□□□ 1.9
UFD1-209ENST00000489406 PHLDB1Q86UU1 1377 aa26.85■■□□□ 1.89
UFD1-209ENST00000489406 ABCA8O94911 1581 aa26.81■■□□□ 1.88
UFD1-209ENST00000489406 ARID3CA6NKF2 412 aa26.77■■□□□ 1.88
UFD1-209ENST00000489406 FRMPD1Q5SYB0 1578 aa26.76■■□□□ 1.87
UFD1-209ENST00000489406 NEO1Q92859 1461 aa26.73■■□□□ 1.87
UFD1-209ENST00000489406 RAPGEF2Q9Y4G8 1499 aa26.71■■□□□ 1.87
UFD1-209ENST00000489406 ABCA9Q8IUA7 1624 aa26.71■■□□□ 1.87
UFD1-209ENST00000489406 ARHGEF40Q8TER5 1519 aa26.69■■□□□ 1.86
UFD1-209ENST00000489406 DMRT2Q9Y5R5 561 aa26.68■■□□□ 1.86
UFD1-209ENST00000489406 POGZQ7Z3K3 1410 aa26.66■■□□□ 1.86
UFD1-209ENST00000489406 YEATS2Q9ULM3 1422 aa26.66■■□□□ 1.86
UFD1-209ENST00000489406 MLECQ14165 292 aa26.65■■□□□ 1.86
UFD1-209ENST00000489406 GOLGA3Q08378 1498 aa26.65■■□□□ 1.86
UFD1-209ENST00000489406 ATP10BO94823 1461 aa26.63■■□□□ 1.85
UFD1-209ENST00000489406 FANCAO15360 1455 aa26.62■■□□□ 1.85
UFD1-209ENST00000489406 STRCQ7RTU9 1775 aa26.58■■□□□ 1.85
UFD1-209ENST00000489406 AKNAQ7Z591 1439 aa26.57■■□□□ 1.84
UFD1-209ENST00000489406 SIGLEC1Q9BZZ2 1709 aa26.56■■□□□ 1.84
UFD1-209ENST00000489406 DENND4BO75064 1496 aaPredicted RBP26.56■■□□□ 1.84
UFD1-209ENST00000489406 PREX1Q8TCU6 1659 aa26.55■■□□□ 1.84
UFD1-209ENST00000489406 FER1L4A9Z1Z3 1794 aa26.55■■□□□ 1.84
UFD1-209ENST00000489406 TTC37Q6PGP7 1564 aa26.54■■□□□ 1.84
UFD1-209ENST00000489406 RICTORQ6R327 1708 aa26.53■■□□□ 1.84
UFD1-209ENST00000489406 CEBPAP49715 358 aaPredicted RBP26.52■■□□□ 1.84
UFD1-209ENST00000489406 CTTNBP2Q8WZ74 1663 aa26.51■■□□□ 1.83
UFD1-209ENST00000489406 FHOD3Q2V2M9 1422 aa26.5■■□□□ 1.83
UFD1-209ENST00000489406 FAM9AQ8IZU1 332 aaPredicted RBP26.5■■□□□ 1.83
UFD1-209ENST00000489406 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.47■■□□□ 1.83
UFD1-209ENST00000489406 HNRNPUL2Q1KMD3 747 aaKnown RBP26.47■■□□□ 1.83
UFD1-209ENST00000489406 ZFYVE16Q7Z3T8 1539 aa26.47■■□□□ 1.83
UFD1-209ENST00000489406 P3H3Q8IVL6 736 aa26.45■■□□□ 1.82
UFD1-209ENST00000489406 LTBP4Q8N2S1 1624 aa26.45■■□□□ 1.82
UFD1-209ENST00000489406 PTPRTO14522 1441 aa26.45■■□□□ 1.82
UFD1-209ENST00000489406 UHRF1BP1Q6BDS2 1440 aa26.42■■□□□ 1.82
UFD1-209ENST00000489406 EFCAB5A4FU69 1503 aa26.42■■□□□ 1.82
UFD1-209ENST00000489406 IQSEC2Q5JU85 1478 aa26.42■■□□□ 1.82
UFD1-209ENST00000489406 ZMYM4Q5VZL5 1548 aa26.41■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms