RNA–Protein interactions for RNA: ENST00000487565.5

GARNL3-218, Transcript of GTPase activating Rap/RanGAP domain like 3, human

TSL 4

Gene GARNL3, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GARNL3-218	ENST00000487565	MNX1	P50219	401 aa	Predicted RBP	14.06	□□□□□ -0.16
GARNL3-218	ENST00000487565	ZRANB1	Q9UGI0	708 aa		13.94	□□□□□ -0.18
GARNL3-218	ENST00000487565	PAK3	O75914	559 aa	Predicted RBP	13.93	□□□□□ -0.18
GARNL3-218	ENST00000487565	VASP	P50552	380 aa	Predicted RBP	13.92	□□□□□ -0.18
GARNL3-218	ENST00000487565	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.92	□□□□□ -0.18
GARNL3-218	ENST00000487565	CECR2	Q9BXF3	1484 aa		13.92	□□□□□ -0.18
GARNL3-218	ENST00000487565	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.91	□□□□□ -0.18
GARNL3-218	ENST00000487565	EIF4G1	Q04637	1599 aa	Known RBP	13.88	□□□□□ -0.19
GARNL3-218	ENST00000487565	SMARCA4	P51532	1647 aa		13.87	□□□□□ -0.19
GARNL3-218	ENST00000487565	ZNF579	Q8NAF0	562 aa	Known RBP	13.84	□□□□□ -0.19
GARNL3-218	ENST00000487565	GABBR2	O75899	941 aa		13.83	□□□□□ -0.2
GARNL3-218	ENST00000487565	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.83	□□□□□ -0.2
GARNL3-218	ENST00000487565	MROH2B	Q7Z745	1585 aa		13.83	□□□□□ -0.2
GARNL3-218	ENST00000487565	KLHL34	Q8N239	644 aa		13.8	□□□□□ -0.2
GARNL3-218	ENST00000487565	RASEF	Q8IZ41	740 aa		13.78	□□□□□ -0.2
GARNL3-218	ENST00000487565	RSF1	Q96T23	1441 aa	Predicted RBP	13.77	□□□□□ -0.21
GARNL3-218	ENST00000487565	CLCN6	P51797	869 aa		13.76	□□□□□ -0.21
GARNL3-218	ENST00000487565	PHF12	Q96QT6	1004 aa		13.76	□□□□□ -0.21
GARNL3-218	ENST00000487565	NUBP1	P53384	320 aa		13.75	□□□□□ -0.21
GARNL3-218	ENST00000487565	CC2D2A	Q9P2K1	1620 aa		13.72	□□□□□ -0.21
GARNL3-218	ENST00000487565	SMARCA2	P51531	1590 aa		13.72	□□□□□ -0.21
GARNL3-218	ENST00000487565	PEG3	Q9GZU2	1588 aa		13.72	□□□□□ -0.21
GARNL3-218	ENST00000487565	CCDC61	Q9Y6R9	512 aa		13.7	□□□□□ -0.22
GARNL3-218	ENST00000487565	ATAD2B	Q9ULI0	1458 aa		13.69	□□□□□ -0.22
GARNL3-218	ENST00000487565	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.69	□□□□□ -0.22
GARNL3-218	ENST00000487565	FAM212A	Q96EL1	285 aa		13.69	□□□□□ -0.22
GARNL3-218	ENST00000487565	WIZ	O95785	1651 aa		13.68	□□□□□ -0.22
GARNL3-218	ENST00000487565	GALR2	O43603	387 aa	Predicted RBP	13.65	□□□□□ -0.22
GARNL3-218	ENST00000487565	SUPT5H	O00267	1087 aa	Known RBP	13.64	□□□□□ -0.23
GARNL3-218	ENST00000487565	HMGXB3	Q12766	1538 aa		13.64	□□□□□ -0.23
GARNL3-218	ENST00000487565	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.63	□□□□□ -0.23
GARNL3-218	ENST00000487565	DCAF8	Q5TAQ9	597 aa		13.63	□□□□□ -0.23
GARNL3-218	ENST00000487565	TOP2A	P11388	1531 aa	Known RBP	13.62	□□□□□ -0.23
GARNL3-218	ENST00000487565	NCAPD3	P42695	1498 aa		13.61	□□□□□ -0.23
GARNL3-218	ENST00000487565	SPOCK2	Q92563	424 aa		13.61	□□□□□ -0.23
GARNL3-218	ENST00000487565	KIF12	Q96FN5	646 aa		13.59	□□□□□ -0.23
GARNL3-218	ENST00000487565	MS4A3	Q96HJ5	214 aa		13.59	□□□□□ -0.23
GARNL3-218	ENST00000487565	DCBLD2	Q96PD2	775 aa		13.59	□□□□□ -0.23
GARNL3-218	ENST00000487565	MAP3K13	O43283	966 aa		13.55	□□□□□ -0.24
GARNL3-218	ENST00000487565	GSE1	Q14687	1217 aa		13.54	□□□□□ -0.24
GARNL3-218	ENST00000487565	POTEI	P0CG38	1075 aa		13.52	□□□□□ -0.25
GARNL3-218	ENST00000487565	PYGB	P11216	843 aa		13.49	□□□□□ -0.25
GARNL3-218	ENST00000487565	PCDHB13	Q9Y5F0	798 aa		13.49	□□□□□ -0.25
GARNL3-218	ENST00000487565	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.48	□□□□□ -0.25
GARNL3-218	ENST00000487565	SGIP1	Q9BQI5	828 aa		13.46	□□□□□ -0.25
GARNL3-218	ENST00000487565	TRPC6	Q9Y210	931 aa		13.41	□□□□□ -0.26
GARNL3-218	ENST00000487565	IFNL1	Q8IU54	200 aa		13.4	□□□□□ -0.26
GARNL3-218	ENST00000487565	CCDC88B	A6NC98	1476 aa		13.39	□□□□□ -0.27
GARNL3-218	ENST00000487565	ATMIN	O43313	823 aa	Predicted RBP	13.37	□□□□□ -0.27
GARNL3-218	ENST00000487565	ASTL	Q6HA08	431 aa	Predicted RBP	13.37	□□□□□ -0.27
GARNL3-218	ENST00000487565	TIE1	P35590	1138 aa		13.36	□□□□□ -0.27
GARNL3-218	ENST00000487565	CHRM1	P11229	460 aa	Predicted RBP	13.35	□□□□□ -0.27
GARNL3-218	ENST00000487565	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.35	□□□□□ -0.27
GARNL3-218	ENST00000487565	PCDHB8	Q9UN66	801 aa		13.34	□□□□□ -0.27
GARNL3-218	ENST00000487565	PELP1	Q8IZL8	1130 aa	Known RBP	13.33	□□□□□ -0.28
GARNL3-218	ENST00000487565	ATN1	P54259	1190 aa	Predicted RBP	13.32	□□□□□ -0.28
GARNL3-218	ENST00000487565	TTLL13P	A6NNM8	815 aa		13.3	□□□□□ -0.28
GARNL3-218	ENST00000487565	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.3	□□□□□ -0.28
GARNL3-218	ENST00000487565	TRIM41	Q8WV44	630 aa		13.29	□□□□□ -0.28
GARNL3-218	ENST00000487565	TMEM106C	Q9BVX2	250 aa		13.28	□□□□□ -0.28
GARNL3-218	ENST00000487565	SLC39A7	Q92504	469 aa		13.26	□□□□□ -0.29
GARNL3-218	ENST00000487565	LAMC3	Q9Y6N6	1575 aa		13.24	□□□□□ -0.29
GARNL3-218	ENST00000487565	CFTR	P13569	1480 aa		13.24	□□□□□ -0.29
GARNL3-218	ENST00000487565	LHX8	Q68G74	356 aa		13.24	□□□□□ -0.29
GARNL3-218	ENST00000487565	CADPS	Q9ULU8	1353 aa		13.23	□□□□□ -0.29
GARNL3-218	ENST00000487565	C7	P10643	843 aa		13.23	□□□□□ -0.29
GARNL3-218	ENST00000487565	METRN	Q9UJH8	293 aa		13.23	□□□□□ -0.29
GARNL3-218	ENST00000487565	TRIM35	Q9UPQ4	493 aa		13.22	□□□□□ -0.29
GARNL3-218	ENST00000487565	NES	P48681	1621 aa		13.21	□□□□□ -0.3
GARNL3-218	ENST00000487565	PRDM2	Q13029	1718 aa		13.19	□□□□□ -0.3
GARNL3-218	ENST00000487565	PSEN1	P49768	467 aa		13.17	□□□□□ -0.3
GARNL3-218	ENST00000487565	PDAP1	Q13442	181 aa	Known RBP	13.16	□□□□□ -0.3
GARNL3-218	ENST00000487565	PDS5B	Q9NTI5	1447 aa		13.13	□□□□□ -0.31
GARNL3-218	ENST00000487565	FANCD2	Q9BXW9	1451 aa		13.12	□□□□□ -0.31
GARNL3-218	ENST00000487565	IER5L	Q5T953	404 aa		13.12	□□□□□ -0.31
GARNL3-218	ENST00000487565	ECM2	O94769	699 aa	Predicted RBP	13.11	□□□□□ -0.31
GARNL3-218	ENST00000487565	SEC24B	O95487	1268 aa		13.11	□□□□□ -0.31
GARNL3-218	ENST00000487565	CEP164	Q9UPV0	1460 aa		13.1	□□□□□ -0.31
GARNL3-218	ENST00000487565	RIOK3	O14730	519 aa	Known RBP	13.1	□□□□□ -0.31
GARNL3-218	ENST00000487565	POTEB2	H3BUK9	544 aa		13.09	□□□□□ -0.31
GARNL3-218	ENST00000487565	GOLGA2	Q08379	1002 aa		13.09	□□□□□ -0.31
GARNL3-218	ENST00000487565	PKD2	Q13563	968 aa		13.09	□□□□□ -0.31
GARNL3-218	ENST00000487565	RNF25	Q96BH1	459 aa	Predicted RBP	13.09	□□□□□ -0.31
GARNL3-218	ENST00000487565	ERCC6	Q03468	1493 aa		13.09	□□□□□ -0.31
GARNL3-218	ENST00000487565	KIF21A	Q7Z4S6	1674 aa		13.07	□□□□□ -0.32
GARNL3-218	ENST00000487565	POTEF	A5A3E0	1075 aa		13.06	□□□□□ -0.32
GARNL3-218	ENST00000487565	COLQ	Q9Y215	455 aa	Predicted RBP	13.06	□□□□□ -0.32
GARNL3-218	ENST00000487565	MKRN3	Q13064	507 aa	Known RBP	13.04	□□□□□ -0.32
GARNL3-218	ENST00000487565	ABCC8	Q09428	1581 aa		13.03	□□□□□ -0.32
GARNL3-218	ENST00000487565	VGF	O15240	615 aa	Predicted RBP	13.03	□□□□□ -0.32
GARNL3-218	ENST00000487565	PLCG2	P16885	1265 aa		13.03	□□□□□ -0.32
GARNL3-218	ENST00000487565	CABP2	Q9NPB3	220 aa		13.02	□□□□□ -0.33
GARNL3-218	ENST00000487565	MRC2	Q9UBG0	1479 aa		13.02	□□□□□ -0.33
GARNL3-218	ENST00000487565	WRN	Q14191	1432 aa	Predicted RBP eCLIP	13.01	□□□□□ -0.33
GARNL3-218	ENST00000487565	IRX5	P78411	483 aa	Predicted RBP	13	□□□□□ -0.33
GARNL3-218	ENST00000487565	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	12.99	□□□□□ -0.33
GARNL3-218	ENST00000487565	ZFP91	Q96JP5	570 aa	Predicted RBP	12.99	□□□□□ -0.33
GARNL3-218	ENST00000487565	TAOK2	Q9UL54	1235 aa		12.99	□□□□□ -0.33
GARNL3-218	ENST00000487565	RGL2	O15211	777 aa		12.98	□□□□□ -0.33
GARNL3-218	ENST00000487565	OCEL1	Q9H607	264 aa		12.98	□□□□□ -0.33

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