RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 STAG3Q9UJ98 1225 aa21.9■■□□□ 1.1
COL7A1-210ENST00000487017 TNIKQ9UKE5 1360 aa21.9■■□□□ 1.1
COL7A1-210ENST00000487017 RRP7BPQ9NSQ0 103 aa21.88■■□□□ 1.09
COL7A1-210ENST00000487017 ESF1Q9H501 851 aaKnown RBP21.87■■□□□ 1.09
COL7A1-210ENST00000487017 ARXQ96QS3 562 aa21.86■■□□□ 1.09
COL7A1-210ENST00000487017 GLIPR1L2Q4G1C9 344 aa21.86■■□□□ 1.09
COL7A1-210ENST00000487017 WRNQ14191 1432 aaPredicted RBP eCLIP21.85■■□□□ 1.09
COL7A1-210ENST00000487017 CEP164Q9UPV0 1460 aa21.82■■□□□ 1.08
COL7A1-210ENST00000487017 RB1CC1Q8TDY2 1594 aa21.79■■□□□ 1.08
COL7A1-210ENST00000487017 DDRGK1Q96HY6 314 aa21.77■■□□□ 1.08
COL7A1-210ENST00000487017 NPM1P06748 294 aaKnown RBP eCLIP21.77■■□□□ 1.08
COL7A1-210ENST00000487017 ANP32EQ9BTT0 268 aa21.75■■□□□ 1.07
COL7A1-210ENST00000487017 SUPT16HQ9Y5B9 1047 aaKnown RBP21.73■■□□□ 1.07
COL7A1-210ENST00000487017 CHMP7Q8WUX9 453 aaPredicted RBP21.71■■□□□ 1.07
COL7A1-210ENST00000487017 KIF27Q86VH2 1401 aa21.7■■□□□ 1.06
COL7A1-210ENST00000487017 BECN1Q14457 450 aa21.68■■□□□ 1.06
COL7A1-210ENST00000487017 MYH16Q9H6N6 1097 aa21.67■■□□□ 1.06
COL7A1-210ENST00000487017 BAZ1BQ9UIG0 1483 aaKnown RBP21.64■■□□□ 1.05
COL7A1-210ENST00000487017 NACADO15069 1562 aa21.63■■□□□ 1.05
COL7A1-210ENST00000487017 SIN3AQ96ST3 1273 aa21.62■■□□□ 1.05
COL7A1-210ENST00000487017 PPP4R2Q9NY27 417 aa21.62■■□□□ 1.05
COL7A1-210ENST00000487017 PLEKHD1A6NEE1 506 aa21.6■■□□□ 1.05
COL7A1-210ENST00000487017 RGL3Q3MIN7 710 aa21.58■■□□□ 1.05
COL7A1-210ENST00000487017 CARD11Q9BXL7 1154 aa21.58■■□□□ 1.04
COL7A1-210ENST00000487017 A0A0G2JS52 829 aa21.56■■□□□ 1.04
COL7A1-210ENST00000487017 SENP3-EIF4A1A0A087X0R7 540 aa21.56■■□□□ 1.04
COL7A1-210ENST00000487017 CDCA8Q53HL2 280 aa21.56■■□□□ 1.04
COL7A1-210ENST00000487017 KNSTRNQ9Y448 316 aa21.55■■□□□ 1.04
COL7A1-210ENST00000487017 CFDP1Q9UEE9 299 aaPredicted RBP21.55■■□□□ 1.04
COL7A1-210ENST00000487017 CCNB3Q8WWL7 1395 aa21.55■■□□□ 1.04
COL7A1-210ENST00000487017 SENP3Q9H4L4 574 aaPredicted RBP21.54■■□□□ 1.04
COL7A1-210ENST00000487017 PPM1GO15355 546 aaPredicted RBP21.53■■□□□ 1.04
COL7A1-210ENST00000487017 PLEKHG5O94827 1062 aa21.53■■□□□ 1.04
COL7A1-210ENST00000487017 BAZ1AQ9NRL2 1556 aaPredicted RBP21.53■■□□□ 1.04
COL7A1-210ENST00000487017 CFAP53Q96M91 514 aa21.51■■□□□ 1.03
COL7A1-210ENST00000487017 TRIM44Q96DX7 344 aaPredicted RBP21.48■■□□□ 1.03
COL7A1-210ENST00000487017 GOLGA6L22H0YM25 854 aa21.48■■□□□ 1.03
COL7A1-210ENST00000487017 KCNH8Q96L42 1107 aa21.48■■□□□ 1.03
COL7A1-210ENST00000487017 ZBTB7CA1YPR0 619 aa21.47■■□□□ 1.03
COL7A1-210ENST00000487017 TIMELESSQ9UNS1 1208 aa21.47■■□□□ 1.03
COL7A1-210ENST00000487017 NOP58Q9Y2X3 529 aaKnown RBP21.46■■□□□ 1.03
COL7A1-210ENST00000487017 FHAD1B1AJZ9 1412 aa21.46■■□□□ 1.03
COL7A1-210ENST00000487017 SOGA1O94964 1423 aa21.45■■□□□ 1.02
COL7A1-210ENST00000487017 CDK11BP21127 795 aaKnown RBP21.45■■□□□ 1.02
COL7A1-210ENST00000487017 CCER2I3L3R5 266 aa21.44■■□□□ 1.02
COL7A1-210ENST00000487017 NCLP19338 710 aaKnown RBP21.43■■□□□ 1.02
COL7A1-210ENST00000487017 CECR2Q9BXF3 1484 aa21.41■■□□□ 1.02
COL7A1-210ENST00000487017 FTSJ3Q8IY81 847 aaKnown RBP21.41■■□□□ 1.02
COL7A1-210ENST00000487017 B4GALNT3Q6L9W6 998 aa21.4■■□□□ 1.02
COL7A1-210ENST00000487017 LAS1LQ9Y4W2 734 aaKnown RBP21.4■■□□□ 1.02
COL7A1-210ENST00000487017 VPS8Q8N3P4 1428 aa21.38■■□□□ 1.01
COL7A1-210ENST00000487017 PPP1R15AO75807 674 aaPredicted RBP21.37■■□□□ 1.01
COL7A1-210ENST00000487017 SETD5Q9C0A6 1442 aa21.37■■□□□ 1.01
COL7A1-210ENST00000487017 RGS3P49796 1198 aa21.35■■□□□ 1.01
COL7A1-210ENST00000487017 C14orf37Q86TY3 774 aa21.35■■□□□ 1.01
COL7A1-210ENST00000487017 NEUROD2Q15784 382 aa21.34■■□□□ 1.01
COL7A1-210ENST00000487017 CASC1Q6TDU7 716 aa21.33■■□□□ 1.01
COL7A1-210ENST00000487017 CC2D1BQ5T0F9 858 aaKnown RBP21.33■■□□□ 1.01
COL7A1-210ENST00000487017 ERICH6BQ5W0A0 696 aa21.32■■□□□ 1
COL7A1-210ENST00000487017 TPRNQ4KMQ1 711 aa21.31■■□□□ 1
COL7A1-210ENST00000487017 CARMIL1Q5VZK9 1371 aa21.31■■□□□ 1
COL7A1-210ENST00000487017 MAPK8IP3Q9UPT6 1336 aa21.31■■□□□ 1
COL7A1-210ENST00000487017 FRAT1Q92837 279 aaPredicted RBP21.29■■□□□ 1
COL7A1-210ENST00000487017 NUDCQ9Y266 331 aa21.29■■□□□ 1
COL7A1-210ENST00000487017 RBM19Q9Y4C8 960 aaKnown RBP21.27■■□□□ 1
COL7A1-210ENST00000487017 CUX2O14529 1486 aa21.27■■□□□ 1
COL7A1-210ENST00000487017 HSPA5P11021 654 aaKnown RBP21.27■■□□□ 1
COL7A1-210ENST00000487017 ARHGAP35Q9NRY4 1499 aa21.26■□□□□ 0.99
COL7A1-210ENST00000487017 TMF1P82094 1093 aa21.26■□□□□ 0.99
COL7A1-210ENST00000487017 PTMAP06454 111 aaKnown RBP21.24■□□□□ 0.99
COL7A1-210ENST00000487017 DCAF11Q8TEB1 546 aa21.24■□□□□ 0.99
COL7A1-210ENST00000487017 MS4A1P11836 297 aa21.24■□□□□ 0.99
COL7A1-210ENST00000487017 ABCC8Q09428 1581 aa21.23■□□□□ 0.99
COL7A1-210ENST00000487017 KANK4Q5T7N3 995 aaPredicted RBP21.22■□□□□ 0.99
COL7A1-210ENST00000487017 CHMP4BQ9H444 224 aaKnown RBP21.22■□□□□ 0.99
COL7A1-210ENST00000487017 TULP1O00294 542 aaPredicted RBP21.21■□□□□ 0.99
COL7A1-210ENST00000487017 CCDC88BA6NC98 1476 aa21.2■□□□□ 0.98
COL7A1-210ENST00000487017 RTN4Q9NQC3 1192 aaKnown RBP21.2■□□□□ 0.98
COL7A1-210ENST00000487017 TNNT2P45379 298 aaPredicted RBP21.19■□□□□ 0.98
COL7A1-210ENST00000487017 EIF4G1Q04637 1599 aaKnown RBP21.19■□□□□ 0.98
COL7A1-210ENST00000487017 MROH2BQ7Z745 1585 aa21.19■□□□□ 0.98
COL7A1-210ENST00000487017 RAB3GAP2Q9H2M9 1393 aa21.18■□□□□ 0.98
COL7A1-210ENST00000487017 HSP90AB1P08238 724 aaKnown RBP21.16■□□□□ 0.98
COL7A1-210ENST00000487017 NAP1L5Q96NT1 182 aaPredicted RBP21.15■□□□□ 0.98
COL7A1-210ENST00000487017 POGKQ9P215 609 aa21.15■□□□□ 0.98
COL7A1-210ENST00000487017 DEKP35659 375 aaKnown RBP21.14■□□□□ 0.98
COL7A1-210ENST00000487017 DNTTIP2Q5QJE6 756 aaKnown RBP21.14■□□□□ 0.98
COL7A1-210ENST00000487017 U2SURPO15042 1029 aaKnown RBP21.13■□□□□ 0.97
COL7A1-210ENST00000487017 PNNQ9H307 717 aaKnown RBP21.13■□□□□ 0.97
COL7A1-210ENST00000487017 TAOK2Q9UL54 1235 aa21.13■□□□□ 0.97
COL7A1-210ENST00000487017 ZRSR1Q15695 479 aaKnown RBP21.13■□□□□ 0.97
COL7A1-210ENST00000487017 KTN1Q86UP2 1357 aaKnown RBP21.11■□□□□ 0.97
COL7A1-210ENST00000487017 HSCBQ8IWL3 235 aa21.09■□□□□ 0.97
COL7A1-210ENST00000487017 HAP1P54257 671 aaPredicted RBP21.08■□□□□ 0.96
COL7A1-210ENST00000487017 PKD2Q13563 968 aa21.07■□□□□ 0.96
COL7A1-210ENST00000487017 KANK1Q14678 1352 aa21.07■□□□□ 0.96
COL7A1-210ENST00000487017 FOXD1Q16676 465 aa21.06■□□□□ 0.96
COL7A1-210ENST00000487017 TSHZ2Q9NRE2 1034 aa21.05■□□□□ 0.96
COL7A1-210ENST00000487017 L1TD1Q5T7N2 865 aaKnown RBP21.04■□□□□ 0.96
COL7A1-210ENST00000487017 MPHOSPH9Q99550 1183 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms