RNA–Protein interactions for RNA: ENST00000480102.1

PTCD3-213, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-213ENST00000480102 VASPP50552 380 aaPredicted RBP9.33□□□□□ -0.92
PTCD3-213ENST00000480102 CD44P16070 742 aaKnown RBP9.31□□□□□ -0.92
PTCD3-213ENST00000480102 EVX2Q03828 476 aa9.31□□□□□ -0.92
PTCD3-213ENST00000480102 CECR2Q9BXF3 1484 aa9.31□□□□□ -0.92
PTCD3-213ENST00000480102 CC2D2AQ9P2K1 1620 aa9.31□□□□□ -0.92
PTCD3-213ENST00000480102 NCAPD3P42695 1498 aa9.3□□□□□ -0.92
PTCD3-213ENST00000480102 ZBTB47Q9UFB7 747 aaPredicted RBP9.3□□□□□ -0.92
PTCD3-213ENST00000480102 BAZ1AQ9NRL2 1556 aaPredicted RBP9.25□□□□□ -0.93
PTCD3-213ENST00000480102 PEG3Q9GZU2 1588 aa9.24□□□□□ -0.93
PTCD3-213ENST00000480102 ATAD2BQ9ULI0 1458 aa9.23□□□□□ -0.93
PTCD3-213ENST00000480102 SMARCA2P51531 1590 aa9.23□□□□□ -0.93
PTCD3-213ENST00000480102 PAK3O75914 559 aaPredicted RBP9.22□□□□□ -0.93
PTCD3-213ENST00000480102 ZRANB1Q9UGI0 708 aa9.22□□□□□ -0.93
PTCD3-213ENST00000480102 HMGXB3Q12766 1538 aa9.21□□□□□ -0.93
PTCD3-213ENST00000480102 IFNLR1Q8IU57 520 aaPredicted RBP9.2□□□□□ -0.94
PTCD3-213ENST00000480102 SMARCA4P51532 1647 aa9.2□□□□□ -0.94
PTCD3-213ENST00000480102 NUBP1P53384 320 aa9.19□□□□□ -0.94
PTCD3-213ENST00000480102 RASEFQ8IZ41 740 aa9.19□□□□□ -0.94
PTCD3-213ENST00000480102 KLHL34Q8N239 644 aa9.19□□□□□ -0.94
PTCD3-213ENST00000480102 ZNF579Q8NAF0 562 aaKnown RBP9.19□□□□□ -0.94
PTCD3-213ENST00000480102 TSPYL2Q9H2G4 693 aaPredicted RBP9.16□□□□□ -0.94
PTCD3-213ENST00000480102 GABBR2O75899 941 aa9.14□□□□□ -0.95
PTCD3-213ENST00000480102 CLCN6P51797 869 aa9.13□□□□□ -0.95
PTCD3-213ENST00000480102 FAM212AQ96EL1 285 aa9.13□□□□□ -0.95
PTCD3-213ENST00000480102 CCDC61Q9Y6R9 512 aa9.13□□□□□ -0.95
PTCD3-213ENST00000480102 MROH2BQ7Z745 1585 aa9.12□□□□□ -0.95
PTCD3-213ENST00000480102 PHF12Q96QT6 1004 aa9.12□□□□□ -0.95
PTCD3-213ENST00000480102 BAZ1BQ9UIG0 1483 aaKnown RBP9.11□□□□□ -0.95
PTCD3-213ENST00000480102 SPOCK2Q92563 424 aa9.1□□□□□ -0.95
PTCD3-213ENST00000480102 RSF1Q96T23 1441 aaPredicted RBP9.09□□□□□ -0.95
PTCD3-213ENST00000480102 DCAF8Q5TAQ9 597 aa9.06□□□□□ -0.96
PTCD3-213ENST00000480102 GALR2O43603 387 aaPredicted RBP9.04□□□□□ -0.96
PTCD3-213ENST00000480102 GSE1Q14687 1217 aa9.04□□□□□ -0.96
PTCD3-213ENST00000480102 KIF12Q96FN5 646 aa9.04□□□□□ -0.96
PTCD3-213ENST00000480102 MS4A3Q96HJ5 214 aa9.01□□□□□ -0.97
PTCD3-213ENST00000480102 MAP3K13O43283 966 aa9□□□□□ -0.97
PTCD3-213ENST00000480102 CADPSQ9ULU8 1353 aa8.99□□□□□ -0.97
PTCD3-213ENST00000480102 PYGBP11216 843 aa8.98□□□□□ -0.97
PTCD3-213ENST00000480102 SGIP1Q9BQI5 828 aa8.98□□□□□ -0.97
PTCD3-213ENST00000480102 CIZ1Q9ULV3 898 aaPredicted RBP8.98□□□□□ -0.97
PTCD3-213ENST00000480102 LAMC3Q9Y6N6 1575 aa8.98□□□□□ -0.97
PTCD3-213ENST00000480102 TOP2AP11388 1531 aaKnown RBP8.97□□□□□ -0.97
PTCD3-213ENST00000480102 PDS5BQ9NTI5 1447 aa8.97□□□□□ -0.97
PTCD3-213ENST00000480102 DCBLD2Q96PD2 775 aa8.96□□□□□ -0.98
PTCD3-213ENST00000480102 PCDHB13Q9Y5F0 798 aa8.96□□□□□ -0.98
PTCD3-213ENST00000480102 CUX2O14529 1486 aa8.95□□□□□ -0.98
PTCD3-213ENST00000480102 CFTRP13569 1480 aa8.95□□□□□ -0.98
PTCD3-213ENST00000480102 POTEIP0CG38 1075 aa8.94□□□□□ -0.98
PTCD3-213ENST00000480102 CHRM1P11229 460 aaPredicted RBP8.93□□□□□ -0.98
PTCD3-213ENST00000480102 IFNL1Q8IU54 200 aa8.93□□□□□ -0.98
PTCD3-213ENST00000480102 WIZO95785 1651 aa8.91□□□□□ -0.98
PTCD3-213ENST00000480102 TRPC6Q9Y210 931 aa8.91□□□□□ -0.98
PTCD3-213ENST00000480102 LHX8Q68G74 356 aa8.9□□□□□ -0.98
PTCD3-213ENST00000480102 TRIM41Q8WV44 630 aa8.9□□□□□ -0.98
PTCD3-213ENST00000480102 ERCC6Q03468 1493 aa8.89□□□□□ -0.99
PTCD3-213ENST00000480102 ASTLQ6HA08 431 aaPredicted RBP8.89□□□□□ -0.99
PTCD3-213ENST00000480102 TIE1P35590 1138 aa8.88□□□□□ -0.99
PTCD3-213ENST00000480102 ZNF467Q7Z7K2 595 aaPredicted RBP8.88□□□□□ -0.99
PTCD3-213ENST00000480102 ATMINO43313 823 aaPredicted RBP8.87□□□□□ -0.99
PTCD3-213ENST00000480102 BMP2KQ9NSY1 1161 aaPredicted RBP8.87□□□□□ -0.99
PTCD3-213ENST00000480102 PCDHB8Q9UN66 801 aa8.87□□□□□ -0.99
PTCD3-213ENST00000480102 NESP48681 1621 aa8.86□□□□□ -0.99
PTCD3-213ENST00000480102 CCDC88BA6NC98 1476 aa8.84□□□□□ -0.99
PTCD3-213ENST00000480102 TTLL13PA6NNM8 815 aa8.84□□□□□ -0.99
PTCD3-213ENST00000480102 ATN1P54259 1190 aaPredicted RBP8.83□□□□□ -1
PTCD3-213ENST00000480102 PKD2Q13563 968 aa8.82□□□□□ -1
PTCD3-213ENST00000480102 PELP1Q8IZL8 1130 aaKnown RBP8.82□□□□□ -1
PTCD3-213ENST00000480102 FANCD2Q9BXW9 1451 aa8.82□□□□□ -1
PTCD3-213ENST00000480102 MRC2Q9UBG0 1479 aa8.82□□□□□ -1
PTCD3-213ENST00000480102 TMEM106CQ9BVX2 250 aa8.81□□□□□ -1
PTCD3-213ENST00000480102 CEP164Q9UPV0 1460 aa8.81□□□□□ -1
PTCD3-213ENST00000480102 WDR62O43379 1518 aa8.8□□□□□ -1
PTCD3-213ENST00000480102 ABCC8Q09428 1581 aa8.79□□□□□ -1
PTCD3-213ENST00000480102 THOC2Q8NI27 1593 aaKnown RBP8.79□□□□□ -1
PTCD3-213ENST00000480102 ECM2O94769 699 aaPredicted RBP8.79□□□□□ -1
PTCD3-213ENST00000480102 RNF25Q96BH1 459 aaPredicted RBP8.79□□□□□ -1
PTCD3-213ENST00000480102 TRIM35Q9UPQ4 493 aa8.79□□□□□ -1
PTCD3-213ENST00000480102 PDAP1Q13442 181 aaKnown RBP8.78□□□□□ -1
PTCD3-213ENST00000480102 SLC39A7Q92504 469 aa8.78□□□□□ -1
PTCD3-213ENST00000480102 PSEN1P49768 467 aa8.77□□□□□ -1.01
PTCD3-213ENST00000480102 RIOK3O14730 519 aaKnown RBP8.76□□□□□ -1.01
PTCD3-213ENST00000480102 METRNQ9UJH8 293 aa8.76□□□□□ -1.01
PTCD3-213ENST00000480102 C7P10643 843 aa8.75□□□□□ -1.01
PTCD3-213ENST00000480102 IER5LQ5T953 404 aa8.73□□□□□ -1.01
PTCD3-213ENST00000480102 PLSCR2Q9NRY7 297 aa8.73□□□□□ -1.01
PTCD3-213ENST00000480102 VGFO15240 615 aaPredicted RBP8.72□□□□□ -1.01
PTCD3-213ENST00000480102 RGL2O15211 777 aa8.71□□□□□ -1.02
PTCD3-213ENST00000480102 URB2Q14146 1524 aaKnown RBP8.7□□□□□ -1.02
PTCD3-213ENST00000480102 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.69□□□□□ -1.02
PTCD3-213ENST00000480102 ZFP91Q96JP5 570 aaPredicted RBP8.69□□□□□ -1.02
PTCD3-213ENST00000480102 TAOK2Q9UL54 1235 aa8.69□□□□□ -1.02
PTCD3-213ENST00000480102 KIF21AQ7Z4S6 1674 aa8.69□□□□□ -1.02
PTCD3-213ENST00000480102 POTEFA5A3E0 1075 aa8.68□□□□□ -1.02
PTCD3-213ENST00000480102 GOLGA2Q08379 1002 aa8.68□□□□□ -1.02
PTCD3-213ENST00000480102 IFT140Q96RY7 1462 aa8.68□□□□□ -1.02
PTCD3-213ENST00000480102 SEC24BO95487 1268 aa8.67□□□□□ -1.02
PTCD3-213ENST00000480102 CABP2Q9NPB3 220 aa8.67□□□□□ -1.02
PTCD3-213ENST00000480102 TOPBP1Q92547 1522 aa8.66□□□□□ -1.02
PTCD3-213ENST00000480102 POTEB2H3BUK9 544 aa8.66□□□□□ -1.02
PTCD3-213ENST00000480102 IRX5P78411 483 aaPredicted RBP8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms