RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 FANCIQ9NVI1 1328 aa26.25■■□□□ 1.79
CCDC88B-207ENST00000479965 SETD5Q9C0A6 1442 aa26.19■■□□□ 1.78
CCDC88B-207ENST00000479965 ATP1B4Q9UN42 357 aaPredicted RBP26.14■■□□□ 1.77
CCDC88B-207ENST00000479965 PRXQ9BXM0 1461 aa26.13■■□□□ 1.77
CCDC88B-207ENST00000479965 DEKP35659 375 aaKnown RBP26.13■■□□□ 1.77
CCDC88B-207ENST00000479965 ERICH3Q5RHP9 1530 aa26.07■■□□□ 1.76
CCDC88B-207ENST00000479965 NBR1Q14596 966 aa26.06■■□□□ 1.76
CCDC88B-207ENST00000479965 ARHGAP35Q9NRY4 1499 aa26.03■■□□□ 1.76
CCDC88B-207ENST00000479965 TOP2BQ02880 1626 aa26.01■■□□□ 1.75
CCDC88B-207ENST00000479965 B4GALNT3Q6L9W6 998 aa26■■□□□ 1.75
CCDC88B-207ENST00000479965 TIMELESSQ9UNS1 1208 aa26■■□□□ 1.75
CCDC88B-207ENST00000479965 TONSLQ96HA7 1378 aa25.99■■□□□ 1.75
CCDC88B-207ENST00000479965 UNC13AQ9UPW8 1703 aa25.98■■□□□ 1.75
CCDC88B-207ENST00000479965 PHLDB1Q86UU1 1377 aa25.97■■□□□ 1.75
CCDC88B-207ENST00000479965 PRKCSHP14314 528 aaPredicted RBP25.97■■□□□ 1.75
CCDC88B-207ENST00000479965 PPP4R2Q9NY27 417 aa25.97■■□□□ 1.75
CCDC88B-207ENST00000479965 MYT1LQ9UL68 1186 aa25.97■■□□□ 1.75
CCDC88B-207ENST00000479965 P3H3Q8IVL6 736 aa25.95■■□□□ 1.74
CCDC88B-207ENST00000479965 KIF27Q86VH2 1401 aa25.93■■□□□ 1.74
CCDC88B-207ENST00000479965 ATAD2BQ9ULI0 1458 aa25.92■■□□□ 1.74
CCDC88B-207ENST00000479965 PEG3Q9GZU2 1588 aa25.87■■□□□ 1.73
CCDC88B-207ENST00000479965 NOP58Q9Y2X3 529 aaKnown RBP25.87■■□□□ 1.73
CCDC88B-207ENST00000479965 FAM9BQ8IZU0 186 aa25.87■■□□□ 1.73
CCDC88B-207ENST00000479965 PAK3O75914 559 aaPredicted RBP25.83■■□□□ 1.73
CCDC88B-207ENST00000479965 LRRC9Q6ZRR7 1453 aa25.82■■□□□ 1.72
CCDC88B-207ENST00000479965 CCDC184Q52MB2 194 aa25.81■■□□□ 1.72
CCDC88B-207ENST00000479965 TIAM1Q13009 1591 aa25.81■■□□□ 1.72
CCDC88B-207ENST00000479965 ERICH6BQ5W0A0 696 aa25.78■■□□□ 1.72
CCDC88B-207ENST00000479965 BIVM-ERCC5R4GMW8 1640 aa25.76■■□□□ 1.71
CCDC88B-207ENST00000479965 ANO8Q9HCE9 1232 aaPredicted RBP25.75■■□□□ 1.71
CCDC88B-207ENST00000479965 CNGB1Q14028 1251 aaPredicted RBP25.72■■□□□ 1.71
CCDC88B-207ENST00000479965 WASHC2AQ641Q2 1341 aa25.72■■□□□ 1.71
CCDC88B-207ENST00000479965 BICRAQ9NZM4 1560 aa25.71■■□□□ 1.71
CCDC88B-207ENST00000479965 RTL5Q5HYW3 569 aaPredicted RBP25.71■■□□□ 1.71
CCDC88B-207ENST00000479965 HSPA5P11021 654 aaKnown RBP25.71■■□□□ 1.71
CCDC88B-207ENST00000479965 MRS2Q9HD23 443 aa25.71■■□□□ 1.71
CCDC88B-207ENST00000479965 CUX1P39880 1505 aa25.7■■□□□ 1.71
CCDC88B-207ENST00000479965 ANP32AP39687 249 aaKnown RBP25.65■■□□□ 1.7
CCDC88B-207ENST00000479965 SENP3-EIF4A1A0A087X0R7 540 aa25.62■■□□□ 1.69
CCDC88B-207ENST00000479965 RTN4Q9NQC3 1192 aaKnown RBP25.61■■□□□ 1.69
CCDC88B-207ENST00000479965 MAP3K1Q13233 1512 aa25.61■■□□□ 1.69
CCDC88B-207ENST00000479965 ZBTB47Q9UFB7 747 aaPredicted RBP25.6■■□□□ 1.69
CCDC88B-207ENST00000479965 IGF1RP08069 1367 aa25.59■■□□□ 1.69
CCDC88B-207ENST00000479965 CCDC18Q5T9S5 1454 aa25.59■■□□□ 1.69
CCDC88B-207ENST00000479965 EIF4G2P78344 907 aaKnown RBP eCLIP25.59■■□□□ 1.69
CCDC88B-207ENST00000479965 CCDC136Q96JN2 1154 aa25.58■■□□□ 1.69
CCDC88B-207ENST00000479965 FHAD1B1AJZ9 1412 aa25.58■■□□□ 1.68
CCDC88B-207ENST00000479965 CARMIL1Q5VZK9 1371 aa25.57■■□□□ 1.68
CCDC88B-207ENST00000479965 SALL2Q9Y467 1007 aaPredicted RBP25.57■■□□□ 1.68
CCDC88B-207ENST00000479965 PRKRIP1Q9H875 184 aaPredicted RBP25.56■■□□□ 1.68
CCDC88B-207ENST00000479965 ZBED9Q6R2W3 1325 aa25.55■■□□□ 1.68
CCDC88B-207ENST00000479965 IPO9Q96P70 1041 aaKnown RBP25.55■■□□□ 1.68
CCDC88B-207ENST00000479965 IL27Q8NEV9 243 aa25.53■■□□□ 1.68
CCDC88B-207ENST00000479965 NPM2Q86SE8 214 aaKnown RBP25.51■■□□□ 1.67
CCDC88B-207ENST00000479965 FHOD3Q2V2M9 1422 aa25.51■■□□□ 1.67
CCDC88B-207ENST00000479965 UACAQ9BZF9 1416 aa25.51■■□□□ 1.67
CCDC88B-207ENST00000479965 C11orf95C9JLR9 678 aaPredicted RBP25.5■■□□□ 1.67
CCDC88B-207ENST00000479965 PCF11O94913 1555 aaKnown RBP25.48■■□□□ 1.67
CCDC88B-207ENST00000479965 RRP7BPQ9NSQ0 103 aa25.47■■□□□ 1.67
CCDC88B-207ENST00000479965 CHIC2Q9UKJ5 165 aa25.47■■□□□ 1.67
CCDC88B-207ENST00000479965 CNTLNQ9NXG0 1405 aa25.47■■□□□ 1.67
CCDC88B-207ENST00000479965 AKNAQ7Z591 1439 aa25.47■■□□□ 1.67
CCDC88B-207ENST00000479965 PTPRKQ15262 1439 aa25.44■■□□□ 1.66
CCDC88B-207ENST00000479965 FGD6Q6ZV73 1430 aa25.44■■□□□ 1.66
CCDC88B-207ENST00000479965 POLR3GLQ9BT43 218 aa25.44■■□□□ 1.66
CCDC88B-207ENST00000479965 AQRO60306 1485 aaKnown RBP eCLIP25.42■■□□□ 1.66
CCDC88B-207ENST00000479965 MTUS2Q5JR59 1369 aa25.42■■□□□ 1.66
CCDC88B-207ENST00000479965 LAS1LQ9Y4W2 734 aaKnown RBP25.4■■□□□ 1.66
CCDC88B-207ENST00000479965 HFM1A2PYH4 1435 aa25.4■■□□□ 1.66
CCDC88B-207ENST00000479965 FOXD1Q16676 465 aa25.39■■□□□ 1.65
CCDC88B-207ENST00000479965 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.38■■□□□ 1.65
CCDC88B-207ENST00000479965 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.37■■□□□ 1.652e-7■■■■■ 130.6
CCDC88B-207ENST00000479965 L3MBTL2Q969R5 705 aa25.37■■□□□ 1.65
CCDC88B-207ENST00000479965 CCDC7Q96M83 1385 aa25.36■■□□□ 1.65
CCDC88B-207ENST00000479965 NAIPQ13075 1403 aa25.35■■□□□ 1.65
CCDC88B-207ENST00000479965 CFAP43Q8NDM7 1665 aa25.35■■□□□ 1.65
CCDC88B-207ENST00000479965 NEFMP07197 916 aa25.33■■□□□ 1.65
CCDC88B-207ENST00000479965 KDM5BQ9UGL1 1544 aa25.33■■□□□ 1.65
CCDC88B-207ENST00000479965 NUDCQ9Y266 331 aa25.32■■□□□ 1.64
CCDC88B-207ENST00000479965 FMN1Q68DA7 1419 aa25.32■■□□□ 1.64
CCDC88B-207ENST00000479965 PTPN23Q9H3S7 1636 aa25.31■■□□□ 1.64
CCDC88B-207ENST00000479965 NCOA2Q15596 1464 aa25.3■■□□□ 1.64
CCDC88B-207ENST00000479965 FYCO1Q9BQS8 1478 aa25.27■■□□□ 1.64
CCDC88B-207ENST00000479965 KIF7Q2M1P5 1343 aa25.26■■□□□ 1.63
CCDC88B-207ENST00000479965 CASKIN1Q8WXD9 1431 aa25.26■■□□□ 1.63
CCDC88B-207ENST00000479965 CFTRP13569 1480 aa25.25■■□□□ 1.63
CCDC88B-207ENST00000479965 SMG6Q86US8 1419 aaKnown RBP25.24■■□□□ 1.63
CCDC88B-207ENST00000479965 NCOA1Q15788 1441 aa25.24■■□□□ 1.63
CCDC88B-207ENST00000479965 FGD5Q6ZNL6 1462 aa25.22■■□□□ 1.63
CCDC88B-207ENST00000479965 NBPF8Q3BBV2 869 aa25.22■■□□□ 1.63
CCDC88B-207ENST00000479965 MPHOSPH9Q99550 1183 aa25.22■■□□□ 1.63
CCDC88B-207ENST00000479965 ZNF326Q5BKZ1 582 aaKnown RBP25.16■■□□□ 1.62
CCDC88B-207ENST00000479965 MYOM3Q5VTT5 1437 aa25.14■■□□□ 1.62
CCDC88B-207ENST00000479965 TMC1Q8TDI8 760 aa25.14■■□□□ 1.61
CCDC88B-207ENST00000479965 RNF123Q5XPI4 1314 aa25.13■■□□□ 1.61
CCDC88B-207ENST00000479965 PDE4AP27815 886 aa25.12■■□□□ 1.61
CCDC88B-207ENST00000479965 EXOC6Q8TAG9 804 aa25.12■■□□□ 1.61
CCDC88B-207ENST00000479965 NCAPD3P42695 1498 aa25.11■■□□□ 1.61
CCDC88B-207ENST00000479965 ARID3CA6NKF2 412 aa25.08■■□□□ 1.6
CCDC88B-207ENST00000479965 BRPF3Q9ULD4 1205 aa25.08■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms