RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 PRG4Q92954 1404 aaPredicted RBP22.52■■□□□ 1.2
SKA3-206ENST00000475251 JPH4Q96JJ6 628 aa22.48■■□□□ 1.19
SKA3-206ENST00000475251 KIF13AQ9H1H9 1805 aa22.47■■□□□ 1.19
SKA3-206ENST00000475251 RUSC2Q8N2Y8 1516 aa22.42■■□□□ 1.18
SKA3-206ENST00000475251 NPM1P06748 294 aaKnown RBP eCLIP22.42■■□□□ 1.18
SKA3-206ENST00000475251 MAPKBP1O60336 1514 aa22.37■■□□□ 1.17
SKA3-206ENST00000475251 ABCC10Q5T3U5 1492 aa22.37■■□□□ 1.17
SKA3-206ENST00000475251 FAM69CQ0P6D2 419 aa22.35■■□□□ 1.17
SKA3-206ENST00000475251 KIAA0586Q9BVV6 1533 aa22.3■■□□□ 1.16
SKA3-206ENST00000475251 DIP2BQ9P265 1576 aa22.29■■□□□ 1.16
SKA3-206ENST00000475251 ADCY10Q96PN6 1610 aa22.28■■□□□ 1.16
SKA3-206ENST00000475251 CUL7Q14999 1698 aa22.27■■□□□ 1.16
SKA3-206ENST00000475251 KIF27Q86VH2 1401 aa22.26■■□□□ 1.15
SKA3-206ENST00000475251 IGF1RP08069 1367 aa22.23■■□□□ 1.15
SKA3-206ENST00000475251 KDM6BO15054 1643 aa22.2■■□□□ 1.15
SKA3-206ENST00000475251 PTPRGP23470 1445 aa22.14■■□□□ 1.14
SKA3-206ENST00000475251 CARMIL2Q6F5E8 1435 aa22.14■■□□□ 1.13
SKA3-206ENST00000475251 TSPOAP1O95153 1857 aa22.11■■□□□ 1.13
SKA3-206ENST00000475251 CARMIL1Q5VZK9 1371 aa22.1■■□□□ 1.13
SKA3-206ENST00000475251 TNIKQ9UKE5 1360 aa22.09■■□□□ 1.13
SKA3-206ENST00000475251 ABCC2Q92887 1545 aa22.08■■□□□ 1.13
SKA3-206ENST00000475251 IQGAP2Q13576 1575 aa22.04■■□□□ 1.12
SKA3-206ENST00000475251 PLB1Q6P1J6 1458 aa22.04■■□□□ 1.12
SKA3-206ENST00000475251 KDM4FA0A1W2PPD8 638 aa22.04■■□□□ 1.12
SKA3-206ENST00000475251 TTBK1Q5TCY1 1321 aaPredicted RBP22.03■■□□□ 1.12
SKA3-206ENST00000475251 GLI2P10070 1586 aa22.01■■□□□ 1.11
SKA3-206ENST00000475251 ASXL2Q76L83 1435 aa22.01■■□□□ 1.11
SKA3-206ENST00000475251 UHRF1BP1LA0JNW5 1464 aa22.01■■□□□ 1.11
SKA3-206ENST00000475251 UACAQ9BZF9 1416 aa21.97■■□□□ 1.11
SKA3-206ENST00000475251 PPRC1Q5VV67 1664 aaKnown RBP21.92■■□□□ 1.1
SKA3-206ENST00000475251 DISP1Q96F81 1524 aa21.92■■□□□ 1.1
SKA3-206ENST00000475251 KDM5BQ9UGL1 1544 aa21.9■■□□□ 1.1
SKA3-206ENST00000475251 UGGT2Q9NYU1 1516 aa21.89■■□□□ 1.09
SKA3-206ENST00000475251 TEX14Q8IWB6 1497 aa21.89■■□□□ 1.09
SKA3-206ENST00000475251 RAPGEF2Q9Y4G8 1499 aa21.89■■□□□ 1.09
SKA3-206ENST00000475251 EPRSP07814 1512 aaKnown RBP21.87■■□□□ 1.09
SKA3-206ENST00000475251 MAP3K4Q9Y6R4 1608 aa21.87■■□□□ 1.09
SKA3-206ENST00000475251 ADGRL1O94910 1474 aa21.84■■□□□ 1.09
SKA3-206ENST00000475251 KIAA0556O60303 1618 aa21.84■■□□□ 1.09
SKA3-206ENST00000475251 ZCCHC11Q5TAX3 1644 aaKnown RBP21.84■■□□□ 1.09
SKA3-206ENST00000475251 COL17A1Q9UMD9 1497 aaPredicted RBP21.77■■□□□ 1.08
SKA3-206ENST00000475251 WDR7Q9Y4E6 1490 aa21.77■■□□□ 1.08
SKA3-206ENST00000475251 FOXD1Q16676 465 aa21.77■■□□□ 1.08
SKA3-206ENST00000475251 GOLGA3Q08378 1498 aa21.74■■□□□ 1.07
SKA3-206ENST00000475251 CTTNBP2Q8WZ74 1663 aa21.72■■□□□ 1.07
SKA3-206ENST00000475251 ILDR1Q86SU0 546 aaPredicted RBP21.68■■□□□ 1.06
SKA3-206ENST00000475251 CFAP43Q8NDM7 1665 aa21.68■■□□□ 1.06
SKA3-206ENST00000475251 MAGI3Q5TCQ9 1506 aa21.67■■□□□ 1.06
SKA3-206ENST00000475251 CD109Q6YHK3 1445 aa21.66■■□□□ 1.06
SKA3-206ENST00000475251 FAM9AQ8IZU1 332 aaPredicted RBP21.64■■□□□ 1.05
SKA3-206ENST00000475251 ABCA8O94911 1581 aa21.64■■□□□ 1.05
SKA3-206ENST00000475251 HECW2Q9P2P5 1572 aa21.63■■□□□ 1.05
SKA3-206ENST00000475251 KCNH8Q96L42 1107 aa21.61■■□□□ 1.05
SKA3-206ENST00000475251 PRXQ9BXM0 1461 aa21.55■■□□□ 1.04
SKA3-206ENST00000475251 ARAP3Q8WWN8 1544 aa21.51■■□□□ 1.03
SKA3-206ENST00000475251 PHLDB1Q86UU1 1377 aa21.49■■□□□ 1.03
SKA3-206ENST00000475251 KIF21BO75037 1637 aa21.48■■□□□ 1.03
SKA3-206ENST00000475251 ATP10BO94823 1461 aa21.45■■□□□ 1.02
SKA3-206ENST00000475251 ABCA9Q8IUA7 1624 aa21.44■■□□□ 1.02
SKA3-206ENST00000475251 ARID3CA6NKF2 412 aa21.41■■□□□ 1.02
SKA3-206ENST00000475251 P3H3Q8IVL6 736 aa21.4■■□□□ 1.02
SKA3-206ENST00000475251 NEO1Q92859 1461 aa21.39■■□□□ 1.02
SKA3-206ENST00000475251 SAMD9Q5K651 1589 aa21.38■■□□□ 1.01
SKA3-206ENST00000475251 RAPGEF6Q8TEU7 1601 aa21.37■■□□□ 1.01
SKA3-206ENST00000475251 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.35■■□□□ 1.01
SKA3-206ENST00000475251 HNRNPUL2Q1KMD3 747 aaKnown RBP21.35■■□□□ 1.01
SKA3-206ENST00000475251 ADAMTSL3P82987 1691 aa21.34■■□□□ 1.01
SKA3-206ENST00000475251 PTPRMP28827 1452 aa21.33■■□□□ 1.01
SKA3-206ENST00000475251 RAPGEF3O95398 923 aa21.32■■□□□ 1
SKA3-206ENST00000475251 CSRNP3Q8WYN3 585 aa21.32■■□□□ 1
SKA3-206ENST00000475251 BCORL1Q5H9F3 1711 aa21.28■■□□□ 1
SKA3-206ENST00000475251 ARID4BQ4LE39 1312 aaPredicted RBP21.28■■□□□ 1
SKA3-206ENST00000475251 FBXO41Q8TF61 875 aa21.27■■□□□ 1
SKA3-206ENST00000475251 NUP153P49790 1475 aaKnown RBP21.26■□□□□ 0.99
SKA3-206ENST00000475251 FRMPD1Q5SYB0 1578 aa21.26■□□□□ 0.99
SKA3-206ENST00000475251 EEA1Q15075 1411 aa21.25■□□□□ 0.99
SKA3-206ENST00000475251 PLEKHD1A6NEE1 506 aa21.24■□□□□ 0.99
SKA3-206ENST00000475251 CFAP74Q9C0B2 1584 aa21.23■□□□□ 0.99
SKA3-206ENST00000475251 MADDQ8WXG6 1647 aa21.22■□□□□ 0.99
SKA3-206ENST00000475251 DENND4BO75064 1496 aaPredicted RBP21.22■□□□□ 0.99
SKA3-206ENST00000475251 ARHGEF40Q8TER5 1519 aa21.22■□□□□ 0.99
SKA3-206ENST00000475251 PCF11O94913 1555 aaKnown RBP21.21■□□□□ 0.99
SKA3-206ENST00000475251 FHOD3Q2V2M9 1422 aa21.2■□□□□ 0.98
SKA3-206ENST00000475251 AKNAQ7Z591 1439 aa21.18■□□□□ 0.98
SKA3-206ENST00000475251 FANCAO15360 1455 aa21.18■□□□□ 0.98
SKA3-206ENST00000475251 POGZQ7Z3K3 1410 aa21.17■□□□□ 0.98
SKA3-206ENST00000475251 RICTORQ6R327 1708 aa21.17■□□□□ 0.98
SKA3-206ENST00000475251 EFCAB5A4FU69 1503 aa21.16■□□□□ 0.98
SKA3-206ENST00000475251 RANGAP1P46060 587 aaPredicted RBP21.16■□□□□ 0.98
SKA3-206ENST00000475251 LMTK3Q96Q04 1460 aa21.15■□□□□ 0.98
SKA3-206ENST00000475251 RIMS1Q86UR5 1692 aaKnown RBP21.14■□□□□ 0.97
SKA3-206ENST00000475251 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.14■□□□□ 0.973e-6■■□□□ 13.1
SKA3-206ENST00000475251 ZMYM4Q5VZL5 1548 aa21.13■□□□□ 0.97
SKA3-206ENST00000475251 MAGI2Q86UL8 1455 aa21.12■□□□□ 0.97
SKA3-206ENST00000475251 ZFYVE16Q7Z3T8 1539 aa21.1■□□□□ 0.97
SKA3-206ENST00000475251 TTC37Q6PGP7 1564 aa21.09■□□□□ 0.97
SKA3-206ENST00000475251 PLPPR3Q6T4P5 718 aa21.08■□□□□ 0.97
SKA3-206ENST00000475251 PLCH2O75038 1416 aa21.03■□□□□ 0.96
SKA3-206ENST00000475251 YEATS2Q9ULM3 1422 aa21.03■□□□□ 0.96
SKA3-206ENST00000475251 HECW1Q76N89 1606 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms