RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 SPDYE4A6NLX3 237 aa6.3□□□□□ -1.4
VPS50-210ENST00000471188 ZCCHC6Q5VYS8 1495 aaKnown RBP6.3□□□□□ -1.4
VPS50-210ENST00000471188 SPDYE1Q8NFV5 336 aaPredicted RBP6.28□□□□□ -1.4
VPS50-210ENST00000471188 SSUH2Q9Y2M2 353 aa6.28□□□□□ -1.4
VPS50-210ENST00000471188 TSHZ2Q9NRE2 1034 aa6.27□□□□□ -1.41
VPS50-210ENST00000471188 MIER1Q8N108 512 aa6.26□□□□□ -1.41
VPS50-210ENST00000471188 ZNF316A6NFI3 1004 aaPredicted RBP6.26□□□□□ -1.41
VPS50-210ENST00000471188 CHADLQ6NUI6 762 aa6.26□□□□□ -1.41
VPS50-210ENST00000471188 TRIM41Q8WV44 630 aa6.24□□□□□ -1.41
VPS50-210ENST00000471188 SUPT16HQ9Y5B9 1047 aaKnown RBP6.24□□□□□ -1.41
VPS50-210ENST00000471188 PRR29P0C7W0 189 aa6.24□□□□□ -1.41
VPS50-210ENST00000471188 FKBP8Q14318 412 aa6.23□□□□□ -1.41
VPS50-210ENST00000471188 PRKAR2AP13861 404 aaKnown RBP6.22□□□□□ -1.41
VPS50-210ENST00000471188 BCANQ96GW7 911 aa6.21□□□□□ -1.42
VPS50-210ENST00000471188 DCAF8L2P0C7V8 631 aa6.21□□□□□ -1.42
VPS50-210ENST00000471188 CC2D2AQ9P2K1 1620 aa6.19□□□□□ -1.42
VPS50-210ENST00000471188 CLCN6P51797 869 aa6.19□□□□□ -1.42
VPS50-210ENST00000471188 EIF4G1Q04637 1599 aaKnown RBP6.18□□□□□ -1.42
VPS50-210ENST00000471188 ANO8Q9HCE9 1232 aaPredicted RBP6.17□□□□□ -1.42
VPS50-210ENST00000471188 CLSPNQ9HAW4 1339 aa6.17□□□□□ -1.42
VPS50-210ENST00000471188 C19orf67A6NJJ6 358 aa6.14□□□□□ -1.43
VPS50-210ENST00000471188 RBM19Q9Y4C8 960 aaKnown RBP6.13□□□□□ -1.43
VPS50-210ENST00000471188 PEG3Q9GZU2 1588 aa6.13□□□□□ -1.43
VPS50-210ENST00000471188 CCDC136Q96JN2 1154 aa6.1□□□□□ -1.43
VPS50-210ENST00000471188 STAG3Q9UJ98 1225 aa6.1□□□□□ -1.43
VPS50-210ENST00000471188 EVX2Q03828 476 aa6.09□□□□□ -1.43
VPS50-210ENST00000471188 ITGAEP38570 1179 aa6.08□□□□□ -1.44
VPS50-210ENST00000471188 NEFLP07196 543 aa6.08□□□□□ -1.44
VPS50-210ENST00000471188 DEKP35659 375 aaKnown RBP6.08□□□□□ -1.44
VPS50-210ENST00000471188 LHX8Q68G74 356 aa6.08□□□□□ -1.44
VPS50-210ENST00000471188 SALL2Q9Y467 1007 aaPredicted RBP6.07□□□□□ -1.44
VPS50-210ENST00000471188 PLCD3Q8N3E9 789 aa6.07□□□□□ -1.44
VPS50-210ENST00000471188 GABBR2O75899 941 aa6.06□□□□□ -1.44
VPS50-210ENST00000471188 FARP1Q9Y4F1 1045 aaPredicted RBP6.06□□□□□ -1.44
VPS50-210ENST00000471188 HMGXB3Q12766 1538 aa6.05□□□□□ -1.44
VPS50-210ENST00000471188 THOC2Q8NI27 1593 aaKnown RBP6.04□□□□□ -1.44
VPS50-210ENST00000471188 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.04□□□□□ -1.44
VPS50-210ENST00000471188 SMARCA2P51531 1590 aa6.03□□□□□ -1.44
VPS50-210ENST00000471188 CD44P16070 742 aaKnown RBP6.03□□□□□ -1.44
VPS50-210ENST00000471188 RTN4Q9NQC3 1192 aaKnown RBP6.03□□□□□ -1.44
VPS50-210ENST00000471188 CREBZFQ9NS37 354 aa6.03□□□□□ -1.44
VPS50-210ENST00000471188 MYT1LQ9UL68 1186 aa6.03□□□□□ -1.44
VPS50-210ENST00000471188 NBR1Q14596 966 aa6.02□□□□□ -1.45
VPS50-210ENST00000471188 PRDM2Q13029 1718 aa6.01□□□□□ -1.45
VPS50-210ENST00000471188 CUX2O14529 1486 aa6.01□□□□□ -1.45
VPS50-210ENST00000471188 PLEKHG5O94827 1062 aa6□□□□□ -1.45
VPS50-210ENST00000471188 SCRIBQ14160 1630 aa6□□□□□ -1.45
VPS50-210ENST00000471188 TSPYL2Q9H2G4 693 aaPredicted RBP6□□□□□ -1.45
VPS50-210ENST00000471188 EIF5BO60841 1220 aaKnown RBP5.99□□□□□ -1.45
VPS50-210ENST00000471188 CDK11AQ9UQ88 783 aaPredicted RBP5.99□□□□□ -1.45
VPS50-210ENST00000471188 KCNH8Q96L42 1107 aa5.98□□□□□ -1.45
VPS50-210ENST00000471188 CECR2Q9BXF3 1484 aa5.98□□□□□ -1.45
VPS50-210ENST00000471188 UBE2Q2Q8WVN8 375 aa5.98□□□□□ -1.45
VPS50-210ENST00000471188 ZRANB1Q9UGI0 708 aa5.98□□□□□ -1.45
VPS50-210ENST00000471188 PROM2Q8N271 834 aa5.97□□□□□ -1.45
VPS50-210ENST00000471188 ERICH6BQ5W0A0 696 aa5.96□□□□□ -1.45
VPS50-210ENST00000471188 KLHL34Q8N239 644 aa5.96□□□□□ -1.45
VPS50-210ENST00000471188 RTL5Q5HYW3 569 aaPredicted RBP5.96□□□□□ -1.46
VPS50-210ENST00000471188 FANCIQ9NVI1 1328 aa5.96□□□□□ -1.46
VPS50-210ENST00000471188 NCAPD3P42695 1498 aa5.96□□□□□ -1.46
VPS50-210ENST00000471188 IL27Q8NEV9 243 aa5.95□□□□□ -1.46
VPS50-210ENST00000471188 PAK3O75914 559 aaPredicted RBP5.95□□□□□ -1.46
VPS50-210ENST00000471188 TRIM52Q96A61 297 aa5.95□□□□□ -1.46
VPS50-210ENST00000471188 SMARCA4P51532 1647 aa5.95□□□□□ -1.46
VPS50-210ENST00000471188 NPM1P06748 294 aaKnown RBP eCLIP5.94□□□□□ -1.46
VPS50-210ENST00000471188 IRX6P78412 446 aaPredicted RBP5.93□□□□□ -1.46
VPS50-210ENST00000471188 DCBLD2Q96PD2 775 aa5.93□□□□□ -1.46
VPS50-210ENST00000471188 PHF12Q96QT6 1004 aa5.93□□□□□ -1.46
VPS50-210ENST00000471188 FBXO3Q9UK99 471 aa5.92□□□□□ -1.46
VPS50-210ENST00000471188 MNX1P50219 401 aaPredicted RBP5.91□□□□□ -1.46
VPS50-210ENST00000471188 NOP58Q9Y2X3 529 aaKnown RBP5.91□□□□□ -1.46
VPS50-210ENST00000471188 LAMC3Q9Y6N6 1575 aa5.9□□□□□ -1.46
VPS50-210ENST00000471188 PKNOX2Q96KN3 472 aa5.9□□□□□ -1.47
VPS50-210ENST00000471188 UBTFP17480 764 aaKnown RBP5.89□□□□□ -1.47
VPS50-210ENST00000471188 VASPP50552 380 aaPredicted RBP5.89□□□□□ -1.47
VPS50-210ENST00000471188 KIF21AQ7Z4S6 1674 aa5.89□□□□□ -1.47
VPS50-210ENST00000471188 RASEFQ8IZ41 740 aa5.89□□□□□ -1.47
VPS50-210ENST00000471188 ZNF579Q8NAF0 562 aaKnown RBP5.89□□□□□ -1.47
VPS50-210ENST00000471188 DDX10Q13206 875 aaKnown RBP5.88□□□□□ -1.47
VPS50-210ENST00000471188 GALR2O43603 387 aaPredicted RBP5.87□□□□□ -1.47
VPS50-210ENST00000471188 PCDH10Q9P2E7 1040 aa5.87□□□□□ -1.47
VPS50-210ENST00000471188 WDR62O43379 1518 aa5.87□□□□□ -1.47
VPS50-210ENST00000471188 DCAF8Q5TAQ9 597 aa5.86□□□□□ -1.47
VPS50-210ENST00000471188 CEP162Q5TB80 1403 aa5.85□□□□□ -1.47
VPS50-210ENST00000471188 ZBTB47Q9UFB7 747 aaPredicted RBP5.84□□□□□ -1.47
VPS50-210ENST00000471188 ANP32AP39687 249 aaKnown RBP5.84□□□□□ -1.47
VPS50-210ENST00000471188 TIMELESSQ9UNS1 1208 aa5.84□□□□□ -1.47
VPS50-210ENST00000471188 ATAD2BQ9ULI0 1458 aa5.84□□□□□ -1.47
VPS50-210ENST00000471188 WRNQ14191 1432 aaPredicted RBP eCLIP5.83□□□□□ -1.48
VPS50-210ENST00000471188 POTEIP0CG38 1075 aa5.83□□□□□ -1.48
VPS50-210ENST00000471188 CIZ1Q9ULV3 898 aaPredicted RBP5.83□□□□□ -1.48
VPS50-210ENST00000471188 ANP32CO43423 234 aa5.82□□□□□ -1.48
VPS50-210ENST00000471188 B4GALNT3Q6L9W6 998 aa5.82□□□□□ -1.48
VPS50-210ENST00000471188 MS4A3Q96HJ5 214 aa5.82□□□□□ -1.48
VPS50-210ENST00000471188 RANGAP1P46060 587 aaPredicted RBP5.82□□□□□ -1.48
VPS50-210ENST00000471188 FAM212AQ96EL1 285 aa5.82□□□□□ -1.48
VPS50-210ENST00000471188 BAZ1AQ9NRL2 1556 aaPredicted RBP5.82□□□□□ -1.48
VPS50-210ENST00000471188 PYGBP11216 843 aa5.82□□□□□ -1.48
VPS50-210ENST00000471188 HNRNPUQ00839 825 aaKnown RBP eCLIP5.82□□□□□ -1.48
VPS50-210ENST00000471188 PLSCR2Q9NRY7 297 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms