RNA–Protein interactions for RNA: ENST00000470443.5

PABPC4-210, Transcript of poly(A) binding protein cytoplasmic 4, humanhuman

TSL 5

Gene PABPC4, Length 1,212 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC4-210ENST00000470443 CREBZFQ9NS37 354 aa12.42□□□□□ -0.42
PABPC4-210ENST00000470443 GABBR2O75899 941 aa12.41□□□□□ -0.42
PABPC4-210ENST00000470443 CD44P16070 742 aaKnown RBP12.41□□□□□ -0.42
PABPC4-210ENST00000470443 PROM2Q8N271 834 aa12.36□□□□□ -0.43
PABPC4-210ENST00000470443 SMARCA4P51532 1647 aa12.35□□□□□ -0.43
PABPC4-210ENST00000470443 HMGXB3Q12766 1538 aa12.34□□□□□ -0.43
PABPC4-210ENST00000470443 THOC2Q8NI27 1593 aaKnown RBP12.34□□□□□ -0.43
PABPC4-210ENST00000470443 SMARCA2P51531 1590 aa12.32□□□□□ -0.44
PABPC4-210ENST00000470443 CLCN6P51797 869 aa12.32□□□□□ -0.44
PABPC4-210ENST00000470443 TRIM41Q8WV44 630 aa12.28□□□□□ -0.44
PABPC4-210ENST00000470443 BAZ1BQ9UIG0 1483 aaKnown RBP12.27□□□□□ -0.45
PABPC4-210ENST00000470443 ZNF579Q8NAF0 562 aaKnown RBP12.26□□□□□ -0.45
PABPC4-210ENST00000470443 KIF21AQ7Z4S6 1674 aa12.25□□□□□ -0.45
PABPC4-210ENST00000470443 MNX1P50219 401 aaPredicted RBP12.23□□□□□ -0.45
PABPC4-210ENST00000470443 ZRANB1Q9UGI0 708 aa12.23□□□□□ -0.45
PABPC4-210ENST00000470443 LAMC3Q9Y6N6 1575 aa12.22□□□□□ -0.45
PABPC4-210ENST00000470443 NPM1P06748 294 aaKnown RBP eCLIP12.21□□□□□ -0.45
PABPC4-210ENST00000470443 MROH2BQ7Z745 1585 aa12.21□□□□□ -0.46
PABPC4-210ENST00000470443 PEG3Q9GZU2 1588 aa12.21□□□□□ -0.46
PABPC4-210ENST00000470443 BAZ1AQ9NRL2 1556 aaPredicted RBP12.21□□□□□ -0.46
PABPC4-210ENST00000470443 PAK3O75914 559 aaPredicted RBP12.17□□□□□ -0.46
PABPC4-210ENST00000470443 PDS5BQ9NTI5 1447 aa12.15□□□□□ -0.46
PABPC4-210ENST00000470443 POTEIP0CG38 1075 aa12.14□□□□□ -0.47
PABPC4-210ENST00000470443 CADPSQ9ULU8 1353 aa12.11□□□□□ -0.47
PABPC4-210ENST00000470443 MRC2Q9UBG0 1479 aa12.09□□□□□ -0.47
PABPC4-210ENST00000470443 DCBLD2Q96PD2 775 aa12.09□□□□□ -0.47
PABPC4-210ENST00000470443 WDR62O43379 1518 aa12.07□□□□□ -0.48
PABPC4-210ENST00000470443 LHX8Q68G74 356 aa12.07□□□□□ -0.48
PABPC4-210ENST00000470443 GALR2O43603 387 aaPredicted RBP12.06□□□□□ -0.48
PABPC4-210ENST00000470443 PHF12Q96QT6 1004 aa12.06□□□□□ -0.48
PABPC4-210ENST00000470443 WIZO95785 1651 aa12.05□□□□□ -0.48
PABPC4-210ENST00000470443 PLEKHG5O94827 1062 aa12.03□□□□□ -0.48
PABPC4-210ENST00000470443 FKBP8Q14318 412 aa12□□□□□ -0.49
PABPC4-210ENST00000470443 MIER1Q8N108 512 aa12□□□□□ -0.49
PABPC4-210ENST00000470443 CEP164Q9UPV0 1460 aa11.98□□□□□ -0.49
PABPC4-210ENST00000470443 FANCD2Q9BXW9 1451 aa11.97□□□□□ -0.49
PABPC4-210ENST00000470443 TSPYL2Q9H2G4 693 aaPredicted RBP11.95□□□□□ -0.5
PABPC4-210ENST00000470443 CCDC61Q9Y6R9 512 aa11.94□□□□□ -0.5
PABPC4-210ENST00000470443 URB2Q14146 1524 aaKnown RBP11.94□□□□□ -0.5
PABPC4-210ENST00000470443 CFTRP13569 1480 aa11.92□□□□□ -0.5
PABPC4-210ENST00000470443 PLCD3Q8N3E9 789 aa11.92□□□□□ -0.5
PABPC4-210ENST00000470443 MS4A3Q96HJ5 214 aa11.91□□□□□ -0.5
PABPC4-210ENST00000470443 RIMBP3CA6NJZ7 1639 aa11.89□□□□□ -0.51
PABPC4-210ENST00000470443 RIMBP3BA6NNM3 1639 aa11.89□□□□□ -0.51
PABPC4-210ENST00000470443 RIMBP3Q9UFD9 1639 aa11.89□□□□□ -0.51
PABPC4-210ENST00000470443 ZBTB47Q9UFB7 747 aaPredicted RBP11.88□□□□□ -0.51
PABPC4-210ENST00000470443 RASEFQ8IZ41 740 aa11.87□□□□□ -0.51
PABPC4-210ENST00000470443 ZNF608Q9ULD9 1512 aaPredicted RBP11.86□□□□□ -0.51
PABPC4-210ENST00000470443 ASTLQ6HA08 431 aaPredicted RBP11.85□□□□□ -0.51
PABPC4-210ENST00000470443 KIF12Q96FN5 646 aa11.85□□□□□ -0.51
PABPC4-210ENST00000470443 RSF1Q96T23 1441 aaPredicted RBP11.84□□□□□ -0.51
PABPC4-210ENST00000470443 PELP1Q8IZL8 1130 aaKnown RBP11.82□□□□□ -0.52
PABPC4-210ENST00000470443 ARHGEF11O15085 1522 aa11.81□□□□□ -0.52
PABPC4-210ENST00000470443 ATMINO43313 823 aaPredicted RBP11.81□□□□□ -0.52
PABPC4-210ENST00000470443 TOP2AP11388 1531 aaKnown RBP11.8□□□□□ -0.52
PABPC4-210ENST00000470443 NUBP1P53384 320 aa11.79□□□□□ -0.52
PABPC4-210ENST00000470443 FBXO3Q9UK99 471 aa11.79□□□□□ -0.52
PABPC4-210ENST00000470443 CYB5RLQ6IPT4 315 aa11.78□□□□□ -0.52
PABPC4-210ENST00000470443 MAP3K13O43283 966 aa11.77□□□□□ -0.53
PABPC4-210ENST00000470443 SLC39A7Q92504 469 aa11.75□□□□□ -0.53
PABPC4-210ENST00000470443 IFT140Q96RY7 1462 aa11.75□□□□□ -0.53
PABPC4-210ENST00000470443 POTEB2H3BUK9 544 aa11.74□□□□□ -0.53
PABPC4-210ENST00000470443 C7P10643 843 aa11.74□□□□□ -0.53
PABPC4-210ENST00000470443 METRNQ9UJH8 293 aa11.74□□□□□ -0.53
PABPC4-210ENST00000470443 CCDC88BA6NC98 1476 aa11.73□□□□□ -0.53
PABPC4-210ENST00000470443 TOPBP1Q92547 1522 aa11.73□□□□□ -0.53
PABPC4-210ENST00000470443 FAM212AQ96EL1 285 aa11.72□□□□□ -0.53
PABPC4-210ENST00000470443 SGIP1Q9BQI5 828 aa11.72□□□□□ -0.53
PABPC4-210ENST00000470443 AQRO60306 1485 aaKnown RBP eCLIP11.71□□□□□ -0.537e-9■■■■■ 35.3
PABPC4-210ENST00000470443 TIE1P35590 1138 aa11.71□□□□□ -0.53
PABPC4-210ENST00000470443 ATN1P54259 1190 aaPredicted RBP11.71□□□□□ -0.53
PABPC4-210ENST00000470443 BMP2KQ9NSY1 1161 aaPredicted RBP11.71□□□□□ -0.53
PABPC4-210ENST00000470443 PRDM2Q13029 1718 aa11.71□□□□□ -0.54
PABPC4-210ENST00000470443 EIF4G3O43432 1585 aaKnown RBP11.71□□□□□ -0.54
PABPC4-210ENST00000470443 ARAP1Q96P48 1450 aa11.7□□□□□ -0.54
PABPC4-210ENST00000470443 OTUD5Q96G74 571 aa11.7□□□□□ -0.54
PABPC4-210ENST00000470443 TRPC6Q9Y210 931 aa11.69□□□□□ -0.54
PABPC4-210ENST00000470443 CHD1O14646 1710 aa11.69□□□□□ -0.54
PABPC4-210ENST00000470443 PCDHB13Q9Y5F0 798 aa11.66□□□□□ -0.54
PABPC4-210ENST00000470443 TARBP1Q13395 1621 aaKnown RBP11.66□□□□□ -0.54
PABPC4-210ENST00000470443 TTLL13PA6NNM8 815 aa11.63□□□□□ -0.55
PABPC4-210ENST00000470443 VASPP50552 380 aaPredicted RBP11.63□□□□□ -0.55
PABPC4-210ENST00000470443 DNMBPQ6XZF7 1577 aa11.62□□□□□ -0.55
PABPC4-210ENST00000470443 RAD54L2Q9Y4B4 1467 aa11.62□□□□□ -0.55
PABPC4-210ENST00000470443 POLA1P09884 1462 aaPredicted RBP11.6□□□□□ -0.55
PABPC4-210ENST00000470443 IFNL1Q8IU54 200 aa11.6□□□□□ -0.55
PABPC4-210ENST00000470443 TDRD9Q8NDG6 1382 aaKnown RBP11.59□□□□□ -0.55
PABPC4-210ENST00000470443 ABCC8Q09428 1581 aa11.58□□□□□ -0.55
PABPC4-210ENST00000470443 POTEJP0CG39 1038 aa11.58□□□□□ -0.56
PABPC4-210ENST00000470443 MAMSTRQ6ZN01 415 aa11.58□□□□□ -0.56
PABPC4-210ENST00000470443 DCAF8Q5TAQ9 597 aa11.57□□□□□ -0.56
PABPC4-210ENST00000470443 POTEFA5A3E0 1075 aa11.56□□□□□ -0.56
PABPC4-210ENST00000470443 IER5LQ5T953 404 aa11.55□□□□□ -0.56
PABPC4-210ENST00000470443 CLASP1Q7Z460 1538 aa11.55□□□□□ -0.56
PABPC4-210ENST00000470443 SOGA1O94964 1423 aa11.54□□□□□ -0.56
PABPC4-210ENST00000470443 KLHL34Q8N239 644 aa11.54□□□□□ -0.56
PABPC4-210ENST00000470443 TRIM35Q9UPQ4 493 aa11.54□□□□□ -0.56
PABPC4-210ENST00000470443 SNAPC4Q5SXM2 1469 aa11.53□□□□□ -0.56
PABPC4-210ENST00000470443 PYGBP11216 843 aa11.51□□□□□ -0.57
PABPC4-210ENST00000470443 TMEM106CQ9BVX2 250 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms