RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 ARXQ96QS3 562 aa25.35■■□□□ 1.65
CCDC88B-204ENST00000463837 DDRGK1Q96HY6 314 aa25.35■■□□□ 1.65
CCDC88B-204ENST00000463837 CHIC2Q9UKJ5 165 aa25.3■■□□□ 1.64
CCDC88B-204ENST00000463837 WRNQ14191 1432 aaPredicted RBP eCLIP25.28■■□□□ 1.64
CCDC88B-204ENST00000463837 CHGAP10645 457 aaKnown RBP25.28■■□□□ 1.64
CCDC88B-204ENST00000463837 WDR43Q15061 677 aaKnown RBP eCLIP25.28■■□□□ 1.64
CCDC88B-204ENST00000463837 SUPT16HQ9Y5B9 1047 aaKnown RBP25.25■■□□□ 1.63
CCDC88B-204ENST00000463837 NACADO15069 1562 aa25.24■■□□□ 1.63
CCDC88B-204ENST00000463837 PPP4R2Q9NY27 417 aa25.18■■□□□ 1.62
CCDC88B-204ENST00000463837 BECN1Q14457 450 aa25.15■■□□□ 1.62
CCDC88B-204ENST00000463837 TSPY4P0CV99 314 aa25.13■■□□□ 1.61
CCDC88B-204ENST00000463837 TSPY10P0CW01 314 aa25.13■■□□□ 1.61
CCDC88B-204ENST00000463837 TIMELESSQ9UNS1 1208 aa25.13■■□□□ 1.61
CCDC88B-204ENST00000463837 PPM1GO15355 546 aaPredicted RBP25.13■■□□□ 1.61
CCDC88B-204ENST00000463837 CHMP7Q8WUX9 453 aaPredicted RBP25.11■■□□□ 1.61
CCDC88B-204ENST00000463837 KIF27Q86VH2 1401 aa25.09■■□□□ 1.61
CCDC88B-204ENST00000463837 KDM2AQ9Y2K7 1162 aa25.09■■□□□ 1.61
CCDC88B-204ENST00000463837 PLPPR3Q6T4P5 718 aa25.07■■□□□ 1.6
CCDC88B-204ENST00000463837 CCER2I3L3R5 266 aa25.06■■□□□ 1.6
CCDC88B-204ENST00000463837 RRP7BPQ9NSQ0 103 aa25.04■■□□□ 1.6
CCDC88B-204ENST00000463837 SENP3-EIF4A1A0A087X0R7 540 aa25.02■■□□□ 1.6
CCDC88B-204ENST00000463837 NOP58Q9Y2X3 529 aaKnown RBP25.01■■□□□ 1.59
CCDC88B-204ENST00000463837 BAZ1AQ9NRL2 1556 aaPredicted RBP25.01■■□□□ 1.59
CCDC88B-204ENST00000463837 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25■■□□□ 1.59
CCDC88B-204ENST00000463837 CCNB3Q8WWL7 1395 aa25■■□□□ 1.59
CCDC88B-204ENST00000463837 ERICH6BQ5W0A0 696 aa24.94■■□□□ 1.58
CCDC88B-204ENST00000463837 RTN4Q9NQC3 1192 aaKnown RBP24.93■■□□□ 1.58
CCDC88B-204ENST00000463837 BAZ1BQ9UIG0 1483 aaKnown RBP24.92■■□□□ 1.58
CCDC88B-204ENST00000463837 MYH16Q9H6N6 1097 aa24.91■■□□□ 1.58
CCDC88B-204ENST00000463837 VPS8Q8N3P4 1428 aa24.9■■□□□ 1.58
CCDC88B-204ENST00000463837 LAS1LQ9Y4W2 734 aaKnown RBP24.89■■□□□ 1.58
CCDC88B-204ENST00000463837 FHAD1B1AJZ9 1412 aa24.89■■□□□ 1.58
CCDC88B-204ENST00000463837 CDCA8Q53HL2 280 aa24.89■■□□□ 1.58
CCDC88B-204ENST00000463837 SIN3AQ96ST3 1273 aa24.89■■□□□ 1.57
CCDC88B-204ENST00000463837 TRIM44Q96DX7 344 aaPredicted RBP24.88■■□□□ 1.57
CCDC88B-204ENST00000463837 GOLGA6L22H0YM25 854 aa24.87■■□□□ 1.57
CCDC88B-204ENST00000463837 RBM19Q9Y4C8 960 aaKnown RBP24.84■■□□□ 1.57
CCDC88B-204ENST00000463837 SETD5Q9C0A6 1442 aa24.8■■□□□ 1.56
CCDC88B-204ENST00000463837 SOGA1O94964 1423 aa24.8■■□□□ 1.56
CCDC88B-204ENST00000463837 B4GALNT3Q6L9W6 998 aa24.8■■□□□ 1.56
CCDC88B-204ENST00000463837 PLEKHD1A6NEE1 506 aa24.8■■□□□ 1.56
CCDC88B-204ENST00000463837 CARD11Q9BXL7 1154 aa24.8■■□□□ 1.56
CCDC88B-204ENST00000463837 KNSTRNQ9Y448 316 aa24.78■■□□□ 1.56
CCDC88B-204ENST00000463837 CFAP53Q96M91 514 aa24.74■■□□□ 1.55
CCDC88B-204ENST00000463837 NCLP19338 710 aaKnown RBP24.72■■□□□ 1.55
CCDC88B-204ENST00000463837 CECR2Q9BXF3 1484 aa24.72■■□□□ 1.55
CCDC88B-204ENST00000463837 DEKP35659 375 aaKnown RBP24.72■■□□□ 1.55
CCDC88B-204ENST00000463837 KCNH8Q96L42 1107 aa24.71■■□□□ 1.55
CCDC88B-204ENST00000463837 PPP1R15AO75807 674 aaPredicted RBP24.7■■□□□ 1.54
CCDC88B-204ENST00000463837 CFDP1Q9UEE9 299 aaPredicted RBP24.7■■□□□ 1.54
CCDC88B-204ENST00000463837 RGS3P49796 1198 aa24.67■■□□□ 1.54
CCDC88B-204ENST00000463837 NAP1L5Q96NT1 182 aaPredicted RBP24.66■■□□□ 1.54
CCDC88B-204ENST00000463837 TSHZ2Q9NRE2 1034 aa24.66■■□□□ 1.54
CCDC88B-204ENST00000463837 RGL3Q3MIN7 710 aa24.64■■□□□ 1.53
CCDC88B-204ENST00000463837 ARHGAP35Q9NRY4 1499 aa24.62■■□□□ 1.53
CCDC88B-204ENST00000463837 MS4A1P11836 297 aa24.61■■□□□ 1.53
CCDC88B-204ENST00000463837 FTSJ3Q8IY81 847 aaKnown RBP24.6■■□□□ 1.53
CCDC88B-204ENST00000463837 CASC1Q6TDU7 716 aa24.59■■□□□ 1.53
CCDC88B-204ENST00000463837 CHMP4BQ9H444 224 aaKnown RBP24.58■■□□□ 1.53
CCDC88B-204ENST00000463837 CARMIL1Q5VZK9 1371 aa24.57■■□□□ 1.52
CCDC88B-204ENST00000463837 PTMAP06454 111 aaKnown RBP24.57■■□□□ 1.52
CCDC88B-204ENST00000463837 HSPA5P11021 654 aaKnown RBP24.57■■□□□ 1.52
CCDC88B-204ENST00000463837 C14orf37Q86TY3 774 aa24.56■■□□□ 1.52
CCDC88B-204ENST00000463837 L1TD1Q5T7N2 865 aaKnown RBP24.55■■□□□ 1.52
CCDC88B-204ENST00000463837 TNNT2P45379 298 aaPredicted RBP24.55■■□□□ 1.52
CCDC88B-204ENST00000463837 RAB3GAP2Q9H2M9 1393 aa24.55■■□□□ 1.52
CCDC88B-204ENST00000463837 CCDC88BA6NC98 1476 aa24.55■■□□□ 1.52
CCDC88B-204ENST00000463837 MROH2BQ7Z745 1585 aa24.54■■□□□ 1.52
CCDC88B-204ENST00000463837 ARID4BQ4LE39 1312 aaPredicted RBP24.52■■□□□ 1.52
CCDC88B-204ENST00000463837 ABCC8Q09428 1581 aa24.52■■□□□ 1.52
CCDC88B-204ENST00000463837 NEUROD2Q15784 382 aa24.51■■□□□ 1.51
CCDC88B-204ENST00000463837 DNTTIP2Q5QJE6 756 aaKnown RBP24.51■■□□□ 1.51
CCDC88B-204ENST00000463837 TCERG1O14776 1098 aaKnown RBP24.5■■□□□ 1.51
CCDC88B-204ENST00000463837 A0A0G2JS52 829 aa24.49■■□□□ 1.51
CCDC88B-204ENST00000463837 TMF1P82094 1093 aa24.49■■□□□ 1.51
CCDC88B-204ENST00000463837 KANK4Q5T7N3 995 aaPredicted RBP24.48■■□□□ 1.51
CCDC88B-204ENST00000463837 NUDCQ9Y266 331 aa24.48■■□□□ 1.51
CCDC88B-204ENST00000463837 CUX2O14529 1486 aa24.48■■□□□ 1.51
CCDC88B-204ENST00000463837 ERCC6Q03468 1493 aa24.47■■□□□ 1.51
CCDC88B-204ENST00000463837 FRAT1Q92837 279 aaPredicted RBP24.47■■□□□ 1.51
CCDC88B-204ENST00000463837 MAPK8IP3Q9UPT6 1336 aa24.45■■□□□ 1.51
CCDC88B-204ENST00000463837 SENP3Q9H4L4 574 aaPredicted RBP24.45■■□□□ 1.51
CCDC88B-204ENST00000463837 TPRNQ4KMQ1 711 aa24.44■■□□□ 1.5
CCDC88B-204ENST00000463837 CC2D1BQ5T0F9 858 aaKnown RBP24.43■■□□□ 1.5
CCDC88B-204ENST00000463837 ZBTB7CA1YPR0 619 aa24.42■■□□□ 1.5
CCDC88B-204ENST00000463837 RALBP1Q15311 655 aa24.41■■□□□ 1.5
CCDC88B-204ENST00000463837 KTN1Q86UP2 1357 aaKnown RBP24.41■■□□□ 1.5
CCDC88B-204ENST00000463837 HSP90AB1P08238 724 aaKnown RBP24.4■■□□□ 1.5
CCDC88B-204ENST00000463837 HAP1P54257 671 aaPredicted RBP24.39■■□□□ 1.5
CCDC88B-204ENST00000463837 TOP2AP11388 1531 aaKnown RBP24.39■■□□□ 1.5
CCDC88B-204ENST00000463837 HSCBQ8IWL3 235 aa24.39■■□□□ 1.49
CCDC88B-204ENST00000463837 PNNQ9H307 717 aaKnown RBP24.38■■□□□ 1.49
CCDC88B-204ENST00000463837 IPO9Q96P70 1041 aaKnown RBP24.37■■□□□ 1.49
CCDC88B-204ENST00000463837 RCAN3Q9UKA8 241 aa24.37■■□□□ 1.49
CCDC88B-204ENST00000463837 CFAP44Q96MT7 982 aa24.36■■□□□ 1.49
CCDC88B-204ENST00000463837 DCAF11Q8TEB1 546 aa24.36■■□□□ 1.49
CCDC88B-204ENST00000463837 FMN1Q68DA7 1419 aa24.35■■□□□ 1.49
CCDC88B-204ENST00000463837 DHX57Q6P158 1386 aaKnown RBP24.33■■□□□ 1.49
CCDC88B-204ENST00000463837 PTMSP20962 102 aa24.33■■□□□ 1.49
CCDC88B-204ENST00000463837 PLEKHG5O94827 1062 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms