RNA–Protein interactions for RNA: ENST00000462787.5

SMC4-204, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2 BASIC

Gene SMC4, Length 5,033 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-204ENST00000462787 BECN1Q14457 450 aa21■□□□□ 0.95
SMC4-204ENST00000462787 RTN4Q9NQC3 1192 aaKnown RBP20.97■□□□□ 0.95
SMC4-204ENST00000462787 CEP164Q9UPV0 1460 aa20.96■□□□□ 0.95
SMC4-204ENST00000462787 TIMELESSQ9UNS1 1208 aa20.94■□□□□ 0.94
SMC4-204ENST00000462787 RB1CC1Q8TDY2 1594 aa20.94■□□□□ 0.94
SMC4-204ENST00000462787 ARXQ96QS3 562 aa20.94■□□□□ 0.94
SMC4-204ENST00000462787 LAS1LQ9Y4W2 734 aaKnown RBP20.91■□□□□ 0.94
SMC4-204ENST00000462787 B4GALNT3Q6L9W6 998 aa20.9■□□□□ 0.94
SMC4-204ENST00000462787 TRIM44Q96DX7 344 aaPredicted RBP20.89■□□□□ 0.94
SMC4-204ENST00000462787 WDR43Q15061 677 aaKnown RBP eCLIP20.88■□□□□ 0.935e-20■■■■■ 85.2
SMC4-204ENST00000462787 CHIC2Q9UKJ5 165 aa20.85■□□□□ 0.93
SMC4-204ENST00000462787 MTUS2Q5JR59 1369 aa20.85■□□□□ 0.93
SMC4-204ENST00000462787 ZNF777Q9ULD5 760 aaPredicted RBP20.82■□□□□ 0.92
SMC4-204ENST00000462787 WRNQ14191 1432 aaPredicted RBP eCLIP20.81■□□□□ 0.92
SMC4-204ENST00000462787 SIN3AQ96ST3 1273 aa20.81■□□□□ 0.92
SMC4-204ENST00000462787 ARID3CA6NKF2 412 aa20.8■□□□□ 0.92
SMC4-204ENST00000462787 NAP1L5Q96NT1 182 aaPredicted RBP20.78■□□□□ 0.92
SMC4-204ENST00000462787 CCNB3Q8WWL7 1395 aa20.78■□□□□ 0.92
SMC4-204ENST00000462787 GOLGA6L22H0YM25 854 aa20.72■□□□□ 0.91
SMC4-204ENST00000462787 VPS8Q8N3P4 1428 aa20.71■□□□□ 0.91
SMC4-204ENST00000462787 TNNT2P45379 298 aaPredicted RBP20.7■□□□□ 0.9
SMC4-204ENST00000462787 L1TD1Q5T7N2 865 aaKnown RBP20.69■□□□□ 0.9
SMC4-204ENST00000462787 RRP7BPQ9NSQ0 103 aa20.68■□□□□ 0.9
SMC4-204ENST00000462787 IPO9Q96P70 1041 aaKnown RBP20.67■□□□□ 0.9
SMC4-204ENST00000462787 FANCIQ9NVI1 1328 aa20.67■□□□□ 0.9
SMC4-204ENST00000462787 KDM2AQ9Y2K7 1162 aa20.64■□□□□ 0.9
SMC4-204ENST00000462787 SETD5Q9C0A6 1442 aa20.63■□□□□ 0.89
SMC4-204ENST00000462787 SOGA1O94964 1423 aa20.62■□□□□ 0.89
SMC4-204ENST00000462787 TCERG1O14776 1098 aaKnown RBP20.62■□□□□ 0.89
SMC4-204ENST00000462787 USP35Q9P2H5 1018 aa20.57■□□□□ 0.88
SMC4-204ENST00000462787 KIF27Q86VH2 1401 aa20.56■□□□□ 0.88
SMC4-204ENST00000462787 RGS3P49796 1198 aa20.55■□□□□ 0.88
SMC4-204ENST00000462787 SENP3-EIF4A1A0A087X0R7 540 aa20.53■□□□□ 0.88
SMC4-204ENST00000462787 TSPY4P0CV99 314 aa20.53■□□□□ 0.88
SMC4-204ENST00000462787 TSPY10P0CW01 314 aa20.53■□□□□ 0.88
SMC4-204ENST00000462787 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.52■□□□□ 0.88
SMC4-204ENST00000462787 MYH16Q9H6N6 1097 aa20.52■□□□□ 0.88
SMC4-204ENST00000462787 NCLP19338 710 aaKnown RBP20.52■□□□□ 0.87
SMC4-204ENST00000462787 FBLN2P98095 1184 aa20.51■□□□□ 0.87
SMC4-204ENST00000462787 HSPA5P11021 654 aaKnown RBP20.5■□□□□ 0.87
SMC4-204ENST00000462787 CARD11Q9BXL7 1154 aa20.5■□□□□ 0.87
SMC4-204ENST00000462787 RAB3GAP2Q9H2M9 1393 aa20.49■□□□□ 0.87
SMC4-204ENST00000462787 PTMAP06454 111 aaKnown RBP20.48■□□□□ 0.87
SMC4-204ENST00000462787 PPP1R15AO75807 674 aaPredicted RBP20.48■□□□□ 0.87
SMC4-204ENST00000462787 FHAD1B1AJZ9 1412 aa20.47■□□□□ 0.87
SMC4-204ENST00000462787 BAZ1AQ9NRL2 1556 aaPredicted RBP20.45■□□□□ 0.86
SMC4-204ENST00000462787 DHX57Q6P158 1386 aaKnown RBP20.45■□□□□ 0.86
SMC4-204ENST00000462787 SLC24A1O60721 1099 aa20.45■□□□□ 0.86
SMC4-204ENST00000462787 CDCA8Q53HL2 280 aa20.44■□□□□ 0.86
SMC4-204ENST00000462787 NUDCQ9Y266 331 aa20.44■□□□□ 0.86
SMC4-204ENST00000462787 KNSTRNQ9Y448 316 aa20.44■□□□□ 0.86
SMC4-204ENST00000462787 DNTTIP2Q5QJE6 756 aaKnown RBP20.43■□□□□ 0.86
SMC4-204ENST00000462787 PNNQ9H307 717 aaKnown RBP20.43■□□□□ 0.86
SMC4-204ENST00000462787 RSPH6AQ9H0K4 717 aa20.42■□□□□ 0.86
SMC4-204ENST00000462787 KANK4Q5T7N3 995 aaPredicted RBP20.41■□□□□ 0.86
SMC4-204ENST00000462787 KCNH8Q96L42 1107 aa20.41■□□□□ 0.86
SMC4-204ENST00000462787 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.4■□□□□ 0.862e-7■■■■□ 25.5
SMC4-204ENST00000462787 RCAN3Q9UKA8 241 aa20.4■□□□□ 0.86
SMC4-204ENST00000462787 CCDC88BA6NC98 1476 aa20.4■□□□□ 0.86
SMC4-204ENST00000462787 CECR2Q9BXF3 1484 aa20.39■□□□□ 0.85
SMC4-204ENST00000462787 MSNP26038 577 aaKnown RBP20.36■□□□□ 0.85
SMC4-204ENST00000462787 FTSJ3Q8IY81 847 aaKnown RBP20.36■□□□□ 0.85
SMC4-204ENST00000462787 HSCBQ8IWL3 235 aa20.36■□□□□ 0.85
SMC4-204ENST00000462787 NACADO15069 1562 aa20.35■□□□□ 0.85
SMC4-204ENST00000462787 HSP90AB1P08238 724 aaKnown RBP20.35■□□□□ 0.85
SMC4-204ENST00000462787 MS4A1P11836 297 aa20.34■□□□□ 0.85
SMC4-204ENST00000462787 CHGAP10645 457 aaKnown RBP20.33■□□□□ 0.84
SMC4-204ENST00000462787 CFAP53Q96M91 514 aa20.32■□□□□ 0.84
SMC4-204ENST00000462787 ABCC8Q09428 1581 aa20.31■□□□□ 0.84
SMC4-204ENST00000462787 PTMSP20962 102 aa20.31■□□□□ 0.84
SMC4-204ENST00000462787 GSE1Q14687 1217 aa20.31■□□□□ 0.84
SMC4-204ENST00000462787 CASC1Q6TDU7 716 aa20.31■□□□□ 0.84
SMC4-204ENST00000462787 ARHGAP35Q9NRY4 1499 aa20.31■□□□□ 0.84
SMC4-204ENST00000462787 GOLGA6L3A6NEY3 463 aa20.28■□□□□ 0.84
SMC4-204ENST00000462787 RALBP1Q15311 655 aa20.28■□□□□ 0.84
SMC4-204ENST00000462787 FRAT1Q92837 279 aaPredicted RBP20.28■□□□□ 0.84
SMC4-204ENST00000462787 PDE3BQ13370 1112 aa20.26■□□□□ 0.83
SMC4-204ENST00000462787 CHMP4BQ9H444 224 aaKnown RBP20.26■□□□□ 0.83
SMC4-204ENST00000462787 ZBED9Q6R2W3 1325 aa20.26■□□□□ 0.83
SMC4-204ENST00000462787 BAZ1BQ9UIG0 1483 aaKnown RBP20.26■□□□□ 0.83
SMC4-204ENST00000462787 CC2D1BQ5T0F9 858 aaKnown RBP20.26■□□□□ 0.83
SMC4-204ENST00000462787 RGL3Q3MIN7 710 aa20.25■□□□□ 0.83
SMC4-204ENST00000462787 MROH2BQ7Z745 1585 aa20.24■□□□□ 0.83
SMC4-204ENST00000462787 KTN1Q86UP2 1357 aaKnown RBP20.24■□□□□ 0.83
SMC4-204ENST00000462787 PDE4AP27815 886 aa20.24■□□□□ 0.83
SMC4-204ENST00000462787 GBP4Q96PP9 640 aa20.23■□□□□ 0.83
SMC4-204ENST00000462787 CDK11BP21127 795 aaKnown RBP20.23■□□□□ 0.83
SMC4-204ENST00000462787 CFDP1Q9UEE9 299 aaPredicted RBP20.22■□□□□ 0.83
SMC4-204ENST00000462787 HSP90AA2PQ14568 343 aaPredicted RBP20.21■□□□□ 0.83
SMC4-204ENST00000462787 SLKQ9H2G2 1235 aaPredicted RBP20.2■□□□□ 0.82
SMC4-204ENST00000462787 TMF1P82094 1093 aa20.19■□□□□ 0.82
SMC4-204ENST00000462787 CHAF1AQ13111 956 aaPredicted RBP20.19■□□□□ 0.82
SMC4-204ENST00000462787 NEUROD2Q15784 382 aa20.17■□□□□ 0.82
SMC4-204ENST00000462787 GZF1Q9H116 711 aaPredicted RBP20.16■□□□□ 0.82
SMC4-204ENST00000462787 CARMIL1Q5VZK9 1371 aa20.16■□□□□ 0.82
SMC4-204ENST00000462787 ARID4BQ4LE39 1312 aaPredicted RBP20.16■□□□□ 0.82
SMC4-204ENST00000462787 SPRYD3Q8NCJ5 442 aa20.16■□□□□ 0.82
SMC4-204ENST00000462787 FMN1Q68DA7 1419 aa20.15■□□□□ 0.82
SMC4-204ENST00000462787 CFAP44Q96MT7 982 aa20.15■□□□□ 0.82
SMC4-204ENST00000462787 PRKRIP1Q9H875 184 aaPredicted RBP20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms