RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 CHGAP10645 457 aaKnown RBP19.95■□□□□ 0.78
PTPRU-205ENST00000460170 SALL2Q9Y467 1007 aaPredicted RBP19.95■□□□□ 0.78
PTPRU-205ENST00000460170 CCNB3Q8WWL7 1395 aa19.94■□□□□ 0.78
PTPRU-205ENST00000460170 NPM2Q86SE8 214 aaKnown RBP19.94■□□□□ 0.78
PTPRU-205ENST00000460170 VPS8Q8N3P4 1428 aa19.93■□□□□ 0.78
PTPRU-205ENST00000460170 CCDC136Q96JN2 1154 aa19.91■□□□□ 0.78
PTPRU-205ENST00000460170 SIN3AQ96ST3 1273 aa19.9■□□□□ 0.78
PTPRU-205ENST00000460170 CARMIL1Q5VZK9 1371 aa19.89■□□□□ 0.78
PTPRU-205ENST00000460170 FHAD1B1AJZ9 1412 aa19.89■□□□□ 0.77
PTPRU-205ENST00000460170 PLEKHD1A6NEE1 506 aa19.89■□□□□ 0.77
PTPRU-205ENST00000460170 NPM1P06748 294 aaKnown RBP eCLIP19.88■□□□□ 0.77
PTPRU-205ENST00000460170 CUX2O14529 1486 aa19.87■□□□□ 0.77
PTPRU-205ENST00000460170 WIZO95785 1651 aa19.86■□□□□ 0.77
PTPRU-205ENST00000460170 IRX6P78412 446 aaPredicted RBP19.85■□□□□ 0.77
PTPRU-205ENST00000460170 CFDP1Q9UEE9 299 aaPredicted RBP19.84■□□□□ 0.77
PTPRU-205ENST00000460170 TOP2AP11388 1531 aaKnown RBP19.83■□□□□ 0.77
PTPRU-205ENST00000460170 BCL11AQ9H165 835 aa19.82■□□□□ 0.76
PTPRU-205ENST00000460170 WDR43Q15061 677 aaKnown RBP eCLIP19.8■□□□□ 0.76
PTPRU-205ENST00000460170 SMARCA2P51531 1590 aa19.79■□□□□ 0.76
PTPRU-205ENST00000460170 KANK4Q5T7N3 995 aaPredicted RBP19.79■□□□□ 0.76
PTPRU-205ENST00000460170 STAG3Q9UJ98 1225 aa19.78■□□□□ 0.76
PTPRU-205ENST00000460170 SLC24A1O60721 1099 aa19.77■□□□□ 0.76
PTPRU-205ENST00000460170 TIMELESSQ9UNS1 1208 aa19.77■□□□□ 0.76
PTPRU-205ENST00000460170 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.77■□□□□ 0.75
PTPRU-205ENST00000460170 ESF1Q9H501 851 aaKnown RBP19.76■□□□□ 0.75
PTPRU-205ENST00000460170 KCNH8Q96L42 1107 aa19.73■□□□□ 0.75
PTPRU-205ENST00000460170 RGL3Q3MIN7 710 aa19.72■□□□□ 0.75
PTPRU-205ENST00000460170 SETD5Q9C0A6 1442 aa19.71■□□□□ 0.75
PTPRU-205ENST00000460170 SUPT16HQ9Y5B9 1047 aaKnown RBP19.68■□□□□ 0.74
PTPRU-205ENST00000460170 UPF2Q9HAU5 1272 aaKnown RBP19.68■□□□□ 0.74
PTPRU-205ENST00000460170 CARD11Q9BXL7 1154 aa19.68■□□□□ 0.74
PTPRU-205ENST00000460170 ARHGAP35Q9NRY4 1499 aa19.64■□□□□ 0.73
PTPRU-205ENST00000460170 RAB3GAP2Q9H2M9 1393 aa19.6■□□□□ 0.73
PTPRU-205ENST00000460170 EIF4G1Q04637 1599 aaKnown RBP19.6■□□□□ 0.73
PTPRU-205ENST00000460170 SMARCA4P51532 1647 aa19.59■□□□□ 0.73
PTPRU-205ENST00000460170 NBR1Q14596 966 aa19.58■□□□□ 0.72
PTPRU-205ENST00000460170 RAPGEF2Q9Y4G8 1499 aa19.58■□□□□ 0.72
PTPRU-205ENST00000460170 CCER2I3L3R5 266 aa19.57■□□□□ 0.72
PTPRU-205ENST00000460170 CDCA8Q53HL2 280 aa19.57■□□□□ 0.72
PTPRU-205ENST00000460170 ATAD2BQ9ULI0 1458 aa19.56■□□□□ 0.72
PTPRU-205ENST00000460170 SENP3-EIF4A1A0A087X0R7 540 aa19.56■□□□□ 0.72
PTPRU-205ENST00000460170 RUSC2Q8N2Y8 1516 aa19.55■□□□□ 0.72
PTPRU-205ENST00000460170 HSP90AA1P07900 732 aaKnown RBP19.55■□□□□ 0.72
PTPRU-205ENST00000460170 KNSTRNQ9Y448 316 aa19.54■□□□□ 0.72
PTPRU-205ENST00000460170 FMN1Q68DA7 1419 aa19.54■□□□□ 0.72
PTPRU-205ENST00000460170 ERCC6Q03468 1493 aa19.52■□□□□ 0.72
PTPRU-205ENST00000460170 PPP4R2Q9NY27 417 aa19.52■□□□□ 0.71
PTPRU-205ENST00000460170 TDRD9Q8NDG6 1382 aaKnown RBP19.51■□□□□ 0.71
PTPRU-205ENST00000460170 CADPSQ9ULU8 1353 aa19.49■□□□□ 0.71
PTPRU-205ENST00000460170 HSPA5P11021 654 aaKnown RBP19.49■□□□□ 0.71
PTPRU-205ENST00000460170 PDS5BQ9NTI5 1447 aa19.47■□□□□ 0.71
PTPRU-205ENST00000460170 PPP1R15AO75807 674 aaPredicted RBP19.46■□□□□ 0.71
PTPRU-205ENST00000460170 DCAF11Q8TEB1 546 aa19.46■□□□□ 0.71
PTPRU-205ENST00000460170 PLPPR3Q6T4P5 718 aa19.44■□□□□ 0.7
PTPRU-205ENST00000460170 ANP32EQ9BTT0 268 aa19.42■□□□□ 0.7
PTPRU-205ENST00000460170 CFAP53Q96M91 514 aa19.42■□□□□ 0.7
PTPRU-205ENST00000460170 FOXD1Q16676 465 aa19.41■□□□□ 0.7
PTPRU-205ENST00000460170 MPHOSPH9Q99550 1183 aa19.41■□□□□ 0.7
PTPRU-205ENST00000460170 FHOD3Q2V2M9 1422 aa19.41■□□□□ 0.7
PTPRU-205ENST00000460170 ANP32BQ92688 251 aaKnown RBP19.4■□□□□ 0.7
PTPRU-205ENST00000460170 SENP3Q9H4L4 574 aaPredicted RBP19.4■□□□□ 0.7
PTPRU-205ENST00000460170 PKD2Q13563 968 aa19.4■□□□□ 0.7
PTPRU-205ENST00000460170 DHX57Q6P158 1386 aaKnown RBP19.39■□□□□ 0.69
PTPRU-205ENST00000460170 DDRGK1Q96HY6 314 aa19.39■□□□□ 0.69
PTPRU-205ENST00000460170 CC2D1BQ5T0F9 858 aaKnown RBP19.37■□□□□ 0.69
PTPRU-205ENST00000460170 TMF1P82094 1093 aa19.36■□□□□ 0.69
PTPRU-205ENST00000460170 B4GALNT3Q6L9W6 998 aa19.36■□□□□ 0.69
PTPRU-205ENST00000460170 CARMIL2Q6F5E8 1435 aa19.34■□□□□ 0.69
PTPRU-205ENST00000460170 MYH16Q9H6N6 1097 aa19.33■□□□□ 0.69
PTPRU-205ENST00000460170 BECN1Q14457 450 aa19.3■□□□□ 0.68
PTPRU-205ENST00000460170 NEUROD2Q15784 382 aa19.3■□□□□ 0.68
PTPRU-205ENST00000460170 L3MBTL2Q969R5 705 aa19.28■□□□□ 0.68
PTPRU-205ENST00000460170 NUP155O75694 1391 aa19.27■□□□□ 0.68
PTPRU-205ENST00000460170 ANKRD30AQ9BXX3 1397 aa19.27■□□□□ 0.68
PTPRU-205ENST00000460170 EIF5BO60841 1220 aaKnown RBP19.26■□□□□ 0.67
PTPRU-205ENST00000460170 KANK1Q14678 1352 aa19.25■□□□□ 0.67
PTPRU-205ENST00000460170 NUDCQ9Y266 331 aa19.24■□□□□ 0.67
PTPRU-205ENST00000460170 ERICH6BQ5W0A0 696 aa19.24■□□□□ 0.67
PTPRU-205ENST00000460170 FTSJ3Q8IY81 847 aaKnown RBP19.23■□□□□ 0.67
PTPRU-205ENST00000460170 PPM1GO15355 546 aaPredicted RBP19.23■□□□□ 0.67
PTPRU-205ENST00000460170 ARXQ96QS3 562 aa19.22■□□□□ 0.67
PTPRU-205ENST00000460170 TNNT2P45379 298 aaPredicted RBP19.22■□□□□ 0.67
PTPRU-205ENST00000460170 MAPK8IP3Q9UPT6 1336 aa19.22■□□□□ 0.67
PTPRU-205ENST00000460170 RBM19Q9Y4C8 960 aaKnown RBP19.21■□□□□ 0.67
PTPRU-205ENST00000460170 FANCD2Q9BXW9 1451 aa19.21■□□□□ 0.67
PTPRU-205ENST00000460170 POGKQ9P215 609 aa19.21■□□□□ 0.66
PTPRU-205ENST00000460170 IGF1RP08069 1367 aa19.2■□□□□ 0.66
PTPRU-205ENST00000460170 KTN1Q86UP2 1357 aaKnown RBP19.2■□□□□ 0.66
PTPRU-205ENST00000460170 CCDC18Q5T9S5 1454 aa19.2■□□□□ 0.66
PTPRU-205ENST00000460170 RGS3P49796 1198 aa19.2■□□□□ 0.66
PTPRU-205ENST00000460170 NOP58Q9Y2X3 529 aaKnown RBP19.2■□□□□ 0.66
PTPRU-205ENST00000460170 FRAT1Q92837 279 aaPredicted RBP19.19■□□□□ 0.66
PTPRU-205ENST00000460170 ROCK2O75116 1388 aaKnown RBP19.18■□□□□ 0.66
PTPRU-205ENST00000460170 RALBP1Q15311 655 aa19.18■□□□□ 0.66
PTPRU-205ENST00000460170 EFCAB2Q5VUJ9 269 aa19.15■□□□□ 0.66
PTPRU-205ENST00000460170 KIF21BO75037 1637 aa19.13■□□□□ 0.65
PTPRU-205ENST00000460170 U2SURPO15042 1029 aaKnown RBP19.12■□□□□ 0.65
PTPRU-205ENST00000460170 C14orf37Q86TY3 774 aa19.12■□□□□ 0.65
PTPRU-205ENST00000460170 HNRNPMP52272 730 aaKnown RBP eCLIP19.12■□□□□ 0.65
PTPRU-205ENST00000460170 FGD5Q6ZNL6 1462 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms