RNA–Protein interactions for RNA: ENST00000453091.6

RIF1-206, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 8,053 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-206ENST00000453091 STAG3Q9UJ98 1225 aa10.43□□□□□ -0.74
RIF1-206ENST00000453091 ZBTB7CA1YPR0 619 aa10.4□□□□□ -0.74
RIF1-206ENST00000453091 HSP90AA1P07900 732 aaKnown RBP10.4□□□□□ -0.74
RIF1-206ENST00000453091 CHMP7Q8WUX9 453 aaPredicted RBP10.39□□□□□ -0.75
RIF1-206ENST00000453091 MTUS2Q5JR59 1369 aa10.37□□□□□ -0.75
RIF1-206ENST00000453091 CCDC180Q9P1Z9 1646 aa10.37□□□□□ -0.75
RIF1-206ENST00000453091 EIF4G2P78344 907 aaKnown RBP eCLIP10.37□□□□□ -0.75
RIF1-206ENST00000453091 TPRNQ4KMQ1 711 aa10.37□□□□□ -0.75
RIF1-206ENST00000453091 CECR2Q9BXF3 1484 aa10.37□□□□□ -0.75
RIF1-206ENST00000453091 RBM19Q9Y4C8 960 aaKnown RBP10.37□□□□□ -0.75
RIF1-206ENST00000453091 TSHZ2Q9NRE2 1034 aa10.36□□□□□ -0.75
RIF1-206ENST00000453091 WDR43Q15061 677 aaKnown RBP eCLIP10.35□□□□□ -0.758e-6■■□□□ 11.7
RIF1-206ENST00000453091 SOGA1O94964 1423 aa10.35□□□□□ -0.75
RIF1-206ENST00000453091 FOXD1Q16676 465 aa10.34□□□□□ -0.75
RIF1-206ENST00000453091 NEFMP07197 916 aa10.33□□□□□ -0.76
RIF1-206ENST00000453091 RGS3P49796 1198 aa10.33□□□□□ -0.76
RIF1-206ENST00000453091 ESF1Q9H501 851 aaKnown RBP10.32□□□□□ -0.76
RIF1-206ENST00000453091 DEKP35659 375 aaKnown RBP10.32□□□□□ -0.76
RIF1-206ENST00000453091 NEUROD2Q15784 382 aa10.32□□□□□ -0.76
RIF1-206ENST00000453091 KANK4Q5T7N3 995 aaPredicted RBP10.31□□□□□ -0.76
RIF1-206ENST00000453091 UPF2Q9HAU5 1272 aaKnown RBP10.31□□□□□ -0.76
RIF1-206ENST00000453091 TSPY4P0CV99 314 aa10.31□□□□□ -0.76
RIF1-206ENST00000453091 TSPY10P0CW01 314 aa10.31□□□□□ -0.76
RIF1-206ENST00000453091 NOP58Q9Y2X3 529 aaKnown RBP10.31□□□□□ -0.76
RIF1-206ENST00000453091 TNNT2P45379 298 aaPredicted RBP10.3□□□□□ -0.76
RIF1-206ENST00000453091 GOLGA3Q08378 1498 aa10.3□□□□□ -0.76
RIF1-206ENST00000453091 NPM1P06748 294 aaKnown RBP eCLIP10.29□□□□□ -0.76
RIF1-206ENST00000453091 PPP4R2Q9NY27 417 aa10.29□□□□□ -0.76
RIF1-206ENST00000453091 CC2D1BQ5T0F9 858 aaKnown RBP10.29□□□□□ -0.76
RIF1-206ENST00000453091 TNIKQ9UKE5 1360 aa10.28□□□□□ -0.76
RIF1-206ENST00000453091 A0A0G2JS52 829 aa10.28□□□□□ -0.76
RIF1-206ENST00000453091 SPRYD3Q8NCJ5 442 aa10.28□□□□□ -0.76
RIF1-206ENST00000453091 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.28□□□□□ -0.76
RIF1-206ENST00000453091 ANP32BQ92688 251 aaKnown RBP10.27□□□□□ -0.76
RIF1-206ENST00000453091 WRNQ14191 1432 aaPredicted RBP eCLIP10.27□□□□□ -0.769e-6■■■■■ 50.1
RIF1-206ENST00000453091 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.27□□□□□ -0.77
RIF1-206ENST00000453091 PPM1GO15355 546 aaPredicted RBP10.26□□□□□ -0.77
RIF1-206ENST00000453091 C14orf37Q86TY3 774 aa10.26□□□□□ -0.77
RIF1-206ENST00000453091 NCLP19338 710 aaKnown RBP10.25□□□□□ -0.77
RIF1-206ENST00000453091 ARID4BQ4LE39 1312 aaPredicted RBP10.25□□□□□ -0.77
RIF1-206ENST00000453091 HSPA5P11021 654 aaKnown RBP10.24□□□□□ -0.77
RIF1-206ENST00000453091 CARD11Q9BXL7 1154 aa10.23□□□□□ -0.77
RIF1-206ENST00000453091 FRAT1Q92837 279 aaPredicted RBP10.23□□□□□ -0.77
RIF1-206ENST00000453091 CFDP1Q9UEE9 299 aaPredicted RBP10.22□□□□□ -0.77
RIF1-206ENST00000453091 BAZ1BQ9UIG0 1483 aaKnown RBP10.21□□□□□ -0.77
RIF1-206ENST00000453091 PLEKHD1A6NEE1 506 aa10.21□□□□□ -0.78
RIF1-206ENST00000453091 SAFB2Q14151 953 aaKnown RBP eCLIP10.21□□□□□ -0.781e-6■■□□□ 11.8
RIF1-206ENST00000453091 NAP1L5Q96NT1 182 aaPredicted RBP10.2□□□□□ -0.78
RIF1-206ENST00000453091 DDRGK1Q96HY6 314 aa10.2□□□□□ -0.78
RIF1-206ENST00000453091 SOX12O15370 315 aa10.18□□□□□ -0.78
RIF1-206ENST00000453091 MLECQ14165 292 aa10.18□□□□□ -0.78
RIF1-206ENST00000453091 ABCC8Q09428 1581 aa10.17□□□□□ -0.78
RIF1-206ENST00000453091 GLIPR1L2Q4G1C9 344 aa10.16□□□□□ -0.78
RIF1-206ENST00000453091 PPP1R15AO75807 674 aaPredicted RBP10.16□□□□□ -0.78
RIF1-206ENST00000453091 TAOK2Q9UL54 1235 aa10.15□□□□□ -0.78
RIF1-206ENST00000453091 NUTM2DQ5VT03 806 aaPredicted RBP10.15□□□□□ -0.78
RIF1-206ENST00000453091 CCDC88BA6NC98 1476 aa10.15□□□□□ -0.79
RIF1-206ENST00000453091 CCNB3Q8WWL7 1395 aa10.14□□□□□ -0.79
RIF1-206ENST00000453091 ARID3AQ99856 593 aa10.14□□□□□ -0.79
RIF1-206ENST00000453091 DCAF11Q8TEB1 546 aa10.14□□□□□ -0.79
RIF1-206ENST00000453091 BECN1Q14457 450 aa10.14□□□□□ -0.79
RIF1-206ENST00000453091 TRIM44Q96DX7 344 aaPredicted RBP10.14□□□□□ -0.79
RIF1-206ENST00000453091 SLC4A3P48751 1232 aa10.13□□□□□ -0.79
RIF1-206ENST00000453091 CEP164Q9UPV0 1460 aa10.13□□□□□ -0.79
RIF1-206ENST00000453091 EIF4G1Q04637 1599 aaKnown RBP10.12□□□□□ -0.79
RIF1-206ENST00000453091 KNSTRNQ9Y448 316 aa10.12□□□□□ -0.79
RIF1-206ENST00000453091 MROH2BQ7Z745 1585 aa10.11□□□□□ -0.79
RIF1-206ENST00000453091 LMOD2Q6P5Q4 547 aa10.11□□□□□ -0.79
RIF1-206ENST00000453091 RAB3GAP2Q9H2M9 1393 aa10.11□□□□□ -0.79
RIF1-206ENST00000453091 GZF1Q9H116 711 aaPredicted RBP10.11□□□□□ -0.79
RIF1-206ENST00000453091 RB1CC1Q8TDY2 1594 aa10.1□□□□□ -0.79
RIF1-206ENST00000453091 KIF27Q86VH2 1401 aa10.1□□□□□ -0.79
RIF1-206ENST00000453091 TDRD9Q8NDG6 1382 aaKnown RBP10.1□□□□□ -0.79
RIF1-206ENST00000453091 CUX2O14529 1486 aa10.1□□□□□ -0.79
RIF1-206ENST00000453091 SLKQ9H2G2 1235 aaPredicted RBP10.1□□□□□ -0.79
RIF1-206ENST00000453091 PLCB2Q00722 1185 aa10.09□□□□□ -0.79
RIF1-206ENST00000453091 CCER2I3L3R5 266 aa10.09□□□□□ -0.79
RIF1-206ENST00000453091 CARMIL1Q5VZK9 1371 aa10.09□□□□□ -0.79
RIF1-206ENST00000453091 EEA1Q15075 1411 aa10.09□□□□□ -0.79
RIF1-206ENST00000453091 FTSJ3Q8IY81 847 aaKnown RBP10.09□□□□□ -0.79
RIF1-206ENST00000453091 MYH16Q9H6N6 1097 aa10.08□□□□□ -0.8
RIF1-206ENST00000453091 STK26Q9P289 416 aa10.08□□□□□ -0.8
RIF1-206ENST00000453091 U2SURPO15042 1029 aaKnown RBP10.08□□□□□ -0.8
RIF1-206ENST00000453091 PTMAP06454 111 aaKnown RBP10.08□□□□□ -0.8
RIF1-206ENST00000453091 AMER1Q5JTC6 1135 aaPredicted RBP10.07□□□□□ -0.8
RIF1-206ENST00000453091 RUSC2Q8N2Y8 1516 aa10.07□□□□□ -0.8
RIF1-206ENST00000453091 SETD5Q9C0A6 1442 aa10.07□□□□□ -0.8
RIF1-206ENST00000453091 PKD2Q13563 968 aa10.06□□□□□ -0.8
RIF1-206ENST00000453091 GGT6Q6P531 493 aa10.06□□□□□ -0.8
RIF1-206ENST00000453091 PLIN1O60240 522 aa10.05□□□□□ -0.8
RIF1-206ENST00000453091 DNTTIP2Q5QJE6 756 aaKnown RBP10.05□□□□□ -0.8
RIF1-206ENST00000453091 APBB1O00213 710 aa10.05□□□□□ -0.8
RIF1-206ENST00000453091 FOXD4L1Q9NU39 408 aa10.05□□□□□ -0.8
RIF1-206ENST00000453091 CCDC146Q8IYE0 955 aa10.04□□□□□ -0.8
RIF1-206ENST00000453091 HSP90AB1P08238 724 aaKnown RBP10.04□□□□□ -0.8
RIF1-206ENST00000453091 POGKQ9P215 609 aa10.03□□□□□ -0.8
RIF1-206ENST00000453091 VPS8Q8N3P4 1428 aa10.03□□□□□ -0.8
RIF1-206ENST00000453091 ERICH6BQ5W0A0 696 aa10.03□□□□□ -0.8
RIF1-206ENST00000453091 HNRNPMP52272 730 aaKnown RBP eCLIP10.02□□□□□ -0.87e-8■■■□□ 15.7
RIF1-206ENST00000453091 DHX57Q6P158 1386 aaKnown RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms