RNA–Protein interactions for RNA: ENST00000452489.6

PTPA-223, Transcript of protein phosphatase 2 phosphatase activator, humanhuman

TSL 1 (best) BASIC

Gene PTPA, Length 2,526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPA-223ENST00000452489 CEP164Q9UPV0 1460 aa25.83■■□□□ 1.72
PTPA-223ENST00000452489 MAPKBP1O60336 1514 aa25.78■■□□□ 1.72
PTPA-223ENST00000452489 KIF21BO75037 1637 aa25.76■■□□□ 1.72
PTPA-223ENST00000452489 CUX2O14529 1486 aa25.75■■□□□ 1.71
PTPA-223ENST00000452489 KANK4Q5T7N3 995 aaPredicted RBP25.75■■□□□ 1.71
PTPA-223ENST00000452489 IPO9Q96P70 1041 aaKnown RBP25.71■■□□□ 1.71
PTPA-223ENST00000452489 SIN3AQ96ST3 1273 aa25.69■■□□□ 1.7
PTPA-223ENST00000452489 EIF5BO60841 1220 aaKnown RBP25.68■■□□□ 1.7
PTPA-223ENST00000452489 RRBP1Q9P2E9 1410 aaKnown RBP25.68■■□□□ 1.7
PTPA-223ENST00000452489 ZBTB47Q9UFB7 747 aaPredicted RBP25.67■■□□□ 1.7
PTPA-223ENST00000452489 ANP32AP39687 249 aaKnown RBP25.66■■□□□ 1.7
PTPA-223ENST00000452489 RAB3GAP2Q9H2M9 1393 aa25.65■■□□□ 1.7
PTPA-223ENST00000452489 WASHC2AQ641Q2 1341 aa25.65■■□□□ 1.7
PTPA-223ENST00000452489 RAPGEF2Q9Y4G8 1499 aa25.61■■□□□ 1.69
PTPA-223ENST00000452489 SMARCA2P51531 1590 aa25.58■■□□□ 1.69
PTPA-223ENST00000452489 BAZ1BQ9UIG0 1483 aaKnown RBP25.57■■□□□ 1.68
PTPA-223ENST00000452489 TOP2AP11388 1531 aaKnown RBP25.57■■□□□ 1.68
PTPA-223ENST00000452489 CCNB3Q8WWL7 1395 aa25.57■■□□□ 1.68
PTPA-223ENST00000452489 PKNOX2Q96KN3 472 aa25.56■■□□□ 1.68
PTPA-223ENST00000452489 C11orf95C9JLR9 678 aaPredicted RBP25.54■■□□□ 1.68
PTPA-223ENST00000452489 BRPF3Q9ULD4 1205 aa25.54■■□□□ 1.68
PTPA-223ENST00000452489 NEFMP07197 916 aa25.5■■□□□ 1.67
PTPA-223ENST00000452489 WASHC2CQ9Y4E1 1318 aa25.5■■□□□ 1.67
PTPA-223ENST00000452489 LAS1LQ9Y4W2 734 aaKnown RBP25.49■■□□□ 1.67
PTPA-223ENST00000452489 ARAP1Q96P48 1450 aa25.44■■□□□ 1.66
PTPA-223ENST00000452489 CCDC184Q52MB2 194 aa25.38■■□□□ 1.65
PTPA-223ENST00000452489 USP35Q9P2H5 1018 aa25.37■■□□□ 1.65
PTPA-223ENST00000452489 TIMELESSQ9UNS1 1208 aa25.37■■□□□ 1.65
PTPA-223ENST00000452489 SETD5Q9C0A6 1442 aa25.37■■□□□ 1.65
PTPA-223ENST00000452489 NPM2Q86SE8 214 aaKnown RBP25.36■■□□□ 1.65
PTPA-223ENST00000452489 SYNJ1O43426 1573 aa25.36■■□□□ 1.65
PTPA-223ENST00000452489 FAM9BQ8IZU0 186 aa25.29■■□□□ 1.64
PTPA-223ENST00000452489 ZBED9Q6R2W3 1325 aa25.24■■□□□ 1.63
PTPA-223ENST00000452489 GSE1Q14687 1217 aa25.23■■□□□ 1.63
PTPA-223ENST00000452489 AKNAQ7Z591 1439 aa25.22■■□□□ 1.63
PTPA-223ENST00000452489 RSPH6AQ9H0K4 717 aa25.21■■□□□ 1.63
PTPA-223ENST00000452489 NCAPD3P42695 1498 aa25.21■■□□□ 1.63
PTPA-223ENST00000452489 PPM1GO15355 546 aaPredicted RBP25.18■■□□□ 1.62
PTPA-223ENST00000452489 TONSLQ96HA7 1378 aa25.16■■□□□ 1.62
PTPA-223ENST00000452489 PEG3Q9GZU2 1588 aa25.15■■□□□ 1.62
PTPA-223ENST00000452489 FRAT1Q92837 279 aaPredicted RBP25.14■■□□□ 1.61
PTPA-223ENST00000452489 MRS2Q9HD23 443 aa25.12■■□□□ 1.61
PTPA-223ENST00000452489 SMARCA4P51532 1647 aa25.12■■□□□ 1.61
PTPA-223ENST00000452489 FAM50AQ14320 339 aaKnown RBP25.09■■□□□ 1.61
PTPA-223ENST00000452489 ZMYND15Q9H091 742 aa25.08■■□□□ 1.6
PTPA-223ENST00000452489 PDE4AP27815 886 aa25.04■■□□□ 1.6
PTPA-223ENST00000452489 VSIG10Q8N0Z9 540 aa25.04■■□□□ 1.6
PTPA-223ENST00000452489 FAM43AQ8N2R8 423 aa25.04■■□□□ 1.6
PTPA-223ENST00000452489 NFKBIBQ15653 356 aa25.04■■□□□ 1.6
PTPA-223ENST00000452489 PRKRIP1Q9H875 184 aaPredicted RBP25.04■■□□□ 1.6
PTPA-223ENST00000452489 SMG6Q86US8 1419 aaKnown RBP25.03■■□□□ 1.6
PTPA-223ENST00000452489 RNF123Q5XPI4 1314 aa25.03■■□□□ 1.6
PTPA-223ENST00000452489 FHAD1B1AJZ9 1412 aa25.02■■□□□ 1.6
PTPA-223ENST00000452489 GLIPR1L2Q4G1C9 344 aa25.01■■□□□ 1.59
PTPA-223ENST00000452489 HSPA5P11021 654 aaKnown RBP25■■□□□ 1.59
PTPA-223ENST00000452489 PLEKHG5O94827 1062 aa25■■□□□ 1.59
PTPA-223ENST00000452489 PHLDB1Q86UU1 1377 aa24.99■■□□□ 1.59
PTPA-223ENST00000452489 CNTLNQ9NXG0 1405 aa24.99■■□□□ 1.59
PTPA-223ENST00000452489 ERICH3Q5RHP9 1530 aa24.99■■□□□ 1.59
PTPA-223ENST00000452489 NUDCQ9Y266 331 aa24.98■■□□□ 1.59
PTPA-223ENST00000452489 PRXQ9BXM0 1461 aa24.98■■□□□ 1.59
PTPA-223ENST00000452489 DCAF11Q8TEB1 546 aa24.97■■□□□ 1.59
PTPA-223ENST00000452489 BACH2Q9BYV9 841 aa24.97■■□□□ 1.59
PTPA-223ENST00000452489 TCERG1O14776 1098 aaKnown RBP24.95■■□□□ 1.58
PTPA-223ENST00000452489 ARHGAP35Q9NRY4 1499 aa24.95■■□□□ 1.58
PTPA-223ENST00000452489 SENP3-EIF4A1A0A087X0R7 540 aa24.94■■□□□ 1.58
PTPA-223ENST00000452489 NCOA2Q15596 1464 aa24.94■■□□□ 1.58
PTPA-223ENST00000452489 SLC4A3P48751 1232 aa24.9■■□□□ 1.58
PTPA-223ENST00000452489 PODXL2Q9NZ53 605 aa24.89■■□□□ 1.57
PTPA-223ENST00000452489 KDM5BQ9UGL1 1544 aa24.88■■□□□ 1.57
PTPA-223ENST00000452489 TIAM1Q13009 1591 aa24.88■■□□□ 1.57
PTPA-223ENST00000452489 DDRGK1Q96HY6 314 aa24.83■■□□□ 1.57
PTPA-223ENST00000452489 RRAGDQ9NQL2 400 aaPredicted RBP24.82■■□□□ 1.56
PTPA-223ENST00000452489 LRRC9Q6ZRR7 1453 aa24.82■■□□□ 1.56
PTPA-223ENST00000452489 EXOC6Q8TAG9 804 aa24.81■■□□□ 1.56
PTPA-223ENST00000452489 EIF4G2P78344 907 aaKnown RBP eCLIP24.8■■□□□ 1.56
PTPA-223ENST00000452489 MS4A1P11836 297 aa24.79■■□□□ 1.56
PTPA-223ENST00000452489 FRAT2O75474 233 aaPredicted RBP24.78■■□□□ 1.56
PTPA-223ENST00000452489 CCDC7Q96M83 1385 aa24.77■■□□□ 1.56
PTPA-223ENST00000452489 SKAP1Q86WV1 359 aa24.77■■□□□ 1.56
PTPA-223ENST00000452489 CNGB1Q14028 1251 aaPredicted RBP24.76■■□□□ 1.55
PTPA-223ENST00000452489 MAP3K1Q13233 1512 aa24.72■■□□□ 1.55
PTPA-223ENST00000452489 CCDC18Q5T9S5 1454 aa24.72■■□□□ 1.55
PTPA-223ENST00000452489 TOP2BQ02880 1626 aa24.72■■□□□ 1.55
PTPA-223ENST00000452489 NCOA1Q15788 1441 aa24.71■■□□□ 1.55
PTPA-223ENST00000452489 HSP90AA2PQ14568 343 aaPredicted RBP24.71■■□□□ 1.55
PTPA-223ENST00000452489 RRP1P56182 461 aaKnown RBP24.69■■□□□ 1.54
PTPA-223ENST00000452489 UACAQ9BZF9 1416 aa24.69■■□□□ 1.54
PTPA-223ENST00000452489 DAXXQ9UER7 740 aaPredicted RBP24.69■■□□□ 1.54
PTPA-223ENST00000452489 NAP1L5Q96NT1 182 aaPredicted RBP24.67■■□□□ 1.54
PTPA-223ENST00000452489 AQRO60306 1485 aaKnown RBP eCLIP24.64■■□□□ 1.542e-7■■■■□ 20.4
PTPA-223ENST00000452489 RRP9O43818 475 aaKnown RBP24.62■■□□□ 1.53
PTPA-223ENST00000452489 HSP90AA1P07900 732 aaKnown RBP24.6■■□□□ 1.53
PTPA-223ENST00000452489 KIF7Q2M1P5 1343 aa24.6■■□□□ 1.53
PTPA-223ENST00000452489 POGKQ9P215 609 aa24.58■■□□□ 1.53
PTPA-223ENST00000452489 ATP1B4Q9UN42 357 aaPredicted RBP24.56■■□□□ 1.52
PTPA-223ENST00000452489 PTPRKQ15262 1439 aa24.54■■□□□ 1.52
PTPA-223ENST00000452489 PNNQ9H307 717 aaKnown RBP24.53■■□□□ 1.52
PTPA-223ENST00000452489 BIVM-ERCC5R4GMW8 1640 aa24.53■■□□□ 1.52
PTPA-223ENST00000452489 HFM1A2PYH4 1435 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms