RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 IGF1RP08069 1367 aa23.14■■□□□ 1.3
HMGB3-204ENST00000448905 KIF27Q86VH2 1401 aa23.13■■□□□ 1.29
HMGB3-204ENST00000448905 KIF13AQ9H1H9 1805 aa23.1■■□□□ 1.29
HMGB3-204ENST00000448905 FAM69CQ0P6D2 419 aa23.09■■□□□ 1.29
HMGB3-204ENST00000448905 KIAA0586Q9BVV6 1533 aa23.04■■□□□ 1.28
HMGB3-204ENST00000448905 RUSC2Q8N2Y8 1516 aa23■■□□□ 1.27
HMGB3-204ENST00000448905 CARMIL1Q5VZK9 1371 aa23■■□□□ 1.27
HMGB3-204ENST00000448905 TTBK1Q5TCY1 1321 aaPredicted RBP22.95■■□□□ 1.26
HMGB3-204ENST00000448905 PTPRGP23470 1445 aa22.94■■□□□ 1.26
HMGB3-204ENST00000448905 ABCC10Q5T3U5 1492 aa22.92■■□□□ 1.26
HMGB3-204ENST00000448905 CARMIL2Q6F5E8 1435 aa22.91■■□□□ 1.26
HMGB3-204ENST00000448905 ADCY10Q96PN6 1610 aa22.91■■□□□ 1.26
HMGB3-204ENST00000448905 TNIKQ9UKE5 1360 aa22.87■■□□□ 1.25
HMGB3-204ENST00000448905 DIP2BQ9P265 1576 aa22.84■■□□□ 1.25
HMGB3-204ENST00000448905 CUL7Q14999 1698 aa22.84■■□□□ 1.25
HMGB3-204ENST00000448905 MAPKBP1O60336 1514 aa22.84■■□□□ 1.25
HMGB3-204ENST00000448905 TSPOAP1O95153 1857 aa22.83■■□□□ 1.24
HMGB3-204ENST00000448905 KDM6BO15054 1643 aa22.73■■□□□ 1.23
HMGB3-204ENST00000448905 KDM4FA0A1W2PPD8 638 aa22.72■■□□□ 1.23
HMGB3-204ENST00000448905 RAPGEF2Q9Y4G8 1499 aa22.71■■□□□ 1.23
HMGB3-204ENST00000448905 UACAQ9BZF9 1416 aa22.7■■□□□ 1.22
HMGB3-204ENST00000448905 PLB1Q6P1J6 1458 aa22.7■■□□□ 1.22
HMGB3-204ENST00000448905 ABCC2Q92887 1545 aa22.7■■□□□ 1.22
HMGB3-204ENST00000448905 FAM9AQ8IZU1 332 aaPredicted RBP22.68■■□□□ 1.22
HMGB3-204ENST00000448905 ASXL2Q76L83 1435 aa22.66■■□□□ 1.22
HMGB3-204ENST00000448905 IQGAP2Q13576 1575 aa22.66■■□□□ 1.22
HMGB3-204ENST00000448905 UHRF1BP1LA0JNW5 1464 aa22.65■■□□□ 1.22
HMGB3-204ENST00000448905 DISP1Q96F81 1524 aa22.61■■□□□ 1.21
HMGB3-204ENST00000448905 PPRC1Q5VV67 1664 aaKnown RBP22.56■■□□□ 1.2
HMGB3-204ENST00000448905 UGGT2Q9NYU1 1516 aa22.56■■□□□ 1.2
HMGB3-204ENST00000448905 KDM5BQ9UGL1 1544 aa22.52■■□□□ 1.2
HMGB3-204ENST00000448905 GLI2P10070 1586 aa22.5■■□□□ 1.19
HMGB3-204ENST00000448905 GOLGA3Q08378 1498 aa22.5■■□□□ 1.19
HMGB3-204ENST00000448905 KCNH8Q96L42 1107 aa22.49■■□□□ 1.19
HMGB3-204ENST00000448905 COL17A1Q9UMD9 1497 aaPredicted RBP22.48■■□□□ 1.19
HMGB3-204ENST00000448905 EPRSP07814 1512 aaKnown RBP22.48■■□□□ 1.19
HMGB3-204ENST00000448905 TEX14Q8IWB6 1497 aa22.46■■□□□ 1.19
HMGB3-204ENST00000448905 ZCCHC11Q5TAX3 1644 aaKnown RBP22.45■■□□□ 1.18
HMGB3-204ENST00000448905 CSRNP3Q8WYN3 585 aa22.42■■□□□ 1.18
HMGB3-204ENST00000448905 KIAA0556O60303 1618 aa22.42■■□□□ 1.18
HMGB3-204ENST00000448905 ADGRL1O94910 1474 aa22.41■■□□□ 1.18
HMGB3-204ENST00000448905 PRXQ9BXM0 1461 aa22.41■■□□□ 1.18
HMGB3-204ENST00000448905 MAP3K4Q9Y6R4 1608 aa22.4■■□□□ 1.18
HMGB3-204ENST00000448905 WDR7Q9Y4E6 1490 aa22.4■■□□□ 1.18
HMGB3-204ENST00000448905 P3H3Q8IVL6 736 aa22.39■■□□□ 1.17
HMGB3-204ENST00000448905 CD109Q6YHK3 1445 aa22.37■■□□□ 1.17
HMGB3-204ENST00000448905 CTTNBP2Q8WZ74 1663 aa22.31■■□□□ 1.16
HMGB3-204ENST00000448905 ARID3CA6NKF2 412 aa22.31■■□□□ 1.16
HMGB3-204ENST00000448905 ILDR1Q86SU0 546 aaPredicted RBP22.31■■□□□ 1.16
HMGB3-204ENST00000448905 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.3■■□□□ 1.16
HMGB3-204ENST00000448905 HNRNPUL2Q1KMD3 747 aaKnown RBP22.3■■□□□ 1.16
HMGB3-204ENST00000448905 MAGI3Q5TCQ9 1506 aa22.26■■□□□ 1.15
HMGB3-204ENST00000448905 ABCA8O94911 1581 aa22.25■■□□□ 1.15
HMGB3-204ENST00000448905 RANGAP1P46060 587 aaPredicted RBP22.23■■□□□ 1.15
HMGB3-204ENST00000448905 PHLDB1Q86UU1 1377 aa22.21■■□□□ 1.15
HMGB3-204ENST00000448905 ATP10BO94823 1461 aa22.21■■□□□ 1.15
HMGB3-204ENST00000448905 EEA1Q15075 1411 aa22.19■■□□□ 1.14
HMGB3-204ENST00000448905 CFAP43Q8NDM7 1665 aa22.17■■□□□ 1.14
HMGB3-204ENST00000448905 HECW2Q9P2P5 1572 aa22.17■■□□□ 1.14
HMGB3-204ENST00000448905 PLEKHD1A6NEE1 506 aa22.17■■□□□ 1.14
HMGB3-204ENST00000448905 RAPGEF3O95398 923 aa22.1■■□□□ 1.13
HMGB3-204ENST00000448905 ARAP3Q8WWN8 1544 aa22.1■■□□□ 1.13
HMGB3-204ENST00000448905 KIF21BO75037 1637 aa22.09■■□□□ 1.13
HMGB3-204ENST00000448905 ARID4BQ4LE39 1312 aaPredicted RBP22.05■■□□□ 1.12
HMGB3-204ENST00000448905 UBTFP17480 764 aaKnown RBP22.02■■□□□ 1.12
HMGB3-204ENST00000448905 NEO1Q92859 1461 aa22.02■■□□□ 1.12
HMGB3-204ENST00000448905 FHOD3Q2V2M9 1422 aa22■■□□□ 1.11
HMGB3-204ENST00000448905 SAMD9Q5K651 1589 aa21.99■■□□□ 1.11
HMGB3-204ENST00000448905 ATP1B4Q9UN42 357 aaPredicted RBP21.98■■□□□ 1.11
HMGB3-204ENST00000448905 NUP153P49790 1475 aaKnown RBP21.97■■□□□ 1.11
HMGB3-204ENST00000448905 ABCA9Q8IUA7 1624 aa21.96■■□□□ 1.11
HMGB3-204ENST00000448905 RAPGEF6Q8TEU7 1601 aa21.96■■□□□ 1.11
HMGB3-204ENST00000448905 EHMT2Q96KQ7 1210 aa21.94■■□□□ 1.1
HMGB3-204ENST00000448905 CDK11AQ9UQ88 783 aaPredicted RBP21.94■■□□□ 1.1
HMGB3-204ENST00000448905 DENND4BO75064 1496 aaPredicted RBP21.9■■□□□ 1.1
HMGB3-204ENST00000448905 AKNAQ7Z591 1439 aa21.89■■□□□ 1.1
HMGB3-204ENST00000448905 ADAMTSL3P82987 1691 aa21.88■■□□□ 1.09
HMGB3-204ENST00000448905 PTPRMP28827 1452 aa21.88■■□□□ 1.09
HMGB3-204ENST00000448905 FRMPD1Q5SYB0 1578 aa21.87■■□□□ 1.09
HMGB3-204ENST00000448905 EFCAB5A4FU69 1503 aa21.86■■□□□ 1.09
HMGB3-204ENST00000448905 FANCAO15360 1455 aa21.85■■□□□ 1.09
HMGB3-204ENST00000448905 EFCAB2Q5VUJ9 269 aa21.84■■□□□ 1.09
HMGB3-204ENST00000448905 CHIC1Q5VXU3 224 aa21.84■■□□□ 1.09
HMGB3-204ENST00000448905 FMN1Q68DA7 1419 aa21.82■■□□□ 1.08
HMGB3-204ENST00000448905 PLPPR3Q6T4P5 718 aa21.82■■□□□ 1.08
HMGB3-204ENST00000448905 BCORL1Q5H9F3 1711 aa21.82■■□□□ 1.08
HMGB3-204ENST00000448905 POGZQ7Z3K3 1410 aa21.81■■□□□ 1.08
HMGB3-204ENST00000448905 MADDQ8WXG6 1647 aa21.8■■□□□ 1.08
HMGB3-204ENST00000448905 PLCH2O75038 1416 aa21.78■■□□□ 1.08
HMGB3-204ENST00000448905 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.76■■□□□ 1.077e-7■■□□□ 14.3
HMGB3-204ENST00000448905 SCAPERQ9BY12 1400 aa21.76■■□□□ 1.07
HMGB3-204ENST00000448905 MLECQ14165 292 aa21.75■■□□□ 1.07
HMGB3-204ENST00000448905 FBXO41Q8TF61 875 aa21.75■■□□□ 1.07
HMGB3-204ENST00000448905 MAGI2Q86UL8 1455 aa21.75■■□□□ 1.07
HMGB3-204ENST00000448905 RIMS1Q86UR5 1692 aaKnown RBP21.74■■□□□ 1.07
HMGB3-204ENST00000448905 RICTORQ6R327 1708 aa21.74■■□□□ 1.07
HMGB3-204ENST00000448905 MYT1LQ9UL68 1186 aa21.73■■□□□ 1.07
HMGB3-204ENST00000448905 TTC37Q6PGP7 1564 aa21.72■■□□□ 1.07
HMGB3-204ENST00000448905 CDK13Q14004 1512 aaKnown RBP21.71■■□□□ 1.07
HMGB3-204ENST00000448905 HSPA2P54652 639 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 321.4 ms