RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 MYO15BQ96JP2 1530 aa10.28□□□□□ -0.76
NEDD9-204ENST00000448183 TSPY4P0CV99 314 aa10.27□□□□□ -0.76
NEDD9-204ENST00000448183 TSPY10P0CW01 314 aa10.27□□□□□ -0.76
NEDD9-204ENST00000448183 MTUS2Q5JR59 1369 aa10.27□□□□□ -0.77
NEDD9-204ENST00000448183 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.26□□□□□ -0.779e-10■□□□□ 9.9
NEDD9-204ENST00000448183 CLIP1P30622 1438 aa10.26□□□□□ -0.77
NEDD9-204ENST00000448183 PPM1GO15355 546 aaPredicted RBP10.26□□□□□ -0.77
NEDD9-204ENST00000448183 GOLGA6L22H0YM25 854 aa10.25□□□□□ -0.77
NEDD9-204ENST00000448183 ERICH6BQ5W0A0 696 aa10.24□□□□□ -0.77
NEDD9-204ENST00000448183 SUPT16HQ9Y5B9 1047 aaKnown RBP10.24□□□□□ -0.77
NEDD9-204ENST00000448183 NCLP19338 710 aaKnown RBP10.23□□□□□ -0.77
NEDD9-204ENST00000448183 PPP4R2Q9NY27 417 aa10.2□□□□□ -0.78
NEDD9-204ENST00000448183 TNNT2P45379 298 aaPredicted RBP10.19□□□□□ -0.78
NEDD9-204ENST00000448183 RRP7BPQ9NSQ0 103 aa10.19□□□□□ -0.78
NEDD9-204ENST00000448183 NPM1P06748 294 aaKnown RBP eCLIP10.18□□□□□ -0.78
NEDD9-204ENST00000448183 NOP58Q9Y2X3 529 aaKnown RBP10.17□□□□□ -0.78
NEDD9-204ENST00000448183 PTMAP06454 111 aaKnown RBP10.17□□□□□ -0.78
NEDD9-204ENST00000448183 EEA1Q15075 1411 aa10.17□□□□□ -0.78
NEDD9-204ENST00000448183 CEP162Q5TB80 1403 aa10.17□□□□□ -0.78
NEDD9-204ENST00000448183 LAS1LQ9Y4W2 734 aaKnown RBP10.15□□□□□ -0.78
NEDD9-204ENST00000448183 CDK11BP21127 795 aaKnown RBP10.15□□□□□ -0.79
NEDD9-204ENST00000448183 GOLGA3Q08378 1498 aa10.14□□□□□ -0.79
NEDD9-204ENST00000448183 CFAP53Q96M91 514 aa10.14□□□□□ -0.79
NEDD9-204ENST00000448183 RSF1Q96T23 1441 aaPredicted RBP10.14□□□□□ -0.79
NEDD9-204ENST00000448183 CDCA8Q53HL2 280 aa10.14□□□□□ -0.79
NEDD9-204ENST00000448183 DNTTIP2Q5QJE6 756 aaKnown RBP10.13□□□□□ -0.79
NEDD9-204ENST00000448183 NAP1L5Q96NT1 182 aaPredicted RBP10.13□□□□□ -0.79
NEDD9-204ENST00000448183 KNSTRNQ9Y448 316 aa10.13□□□□□ -0.79
NEDD9-204ENST00000448183 SENP3-EIF4A1A0A087X0R7 540 aa10.12□□□□□ -0.79
NEDD9-204ENST00000448183 RTN4Q9NQC3 1192 aaKnown RBP10.12□□□□□ -0.79
NEDD9-204ENST00000448183 FTSJ3Q8IY81 847 aaKnown RBP10.11□□□□□ -0.79
NEDD9-204ENST00000448183 CASC1Q6TDU7 716 aa10.11□□□□□ -0.79
NEDD9-204ENST00000448183 RGS3P49796 1198 aa10.11□□□□□ -0.79
NEDD9-204ENST00000448183 ZRSR1Q15695 479 aaKnown RBP10.11□□□□□ -0.79
NEDD9-204ENST00000448183 RGL3Q3MIN7 710 aa10.1□□□□□ -0.79
NEDD9-204ENST00000448183 CARD11Q9BXL7 1154 aa10.1□□□□□ -0.79
NEDD9-204ENST00000448183 PLPPR3Q6T4P5 718 aa10.09□□□□□ -0.79
NEDD9-204ENST00000448183 B4GALNT3Q6L9W6 998 aa10.09□□□□□ -0.79
NEDD9-204ENST00000448183 TNIKQ9UKE5 1360 aa10.08□□□□□ -0.8
NEDD9-204ENST00000448183 BAZ1AQ9NRL2 1556 aaPredicted RBP10.07□□□□□ -0.8
NEDD9-204ENST00000448183 SIN3AQ96ST3 1273 aa10.07□□□□□ -0.8
NEDD9-204ENST00000448183 PLEKHD1A6NEE1 506 aa10.06□□□□□ -0.8
NEDD9-204ENST00000448183 NEUROD2Q15784 382 aa10.06□□□□□ -0.8
NEDD9-204ENST00000448183 DEKP35659 375 aaKnown RBP10.05□□□□□ -0.8
NEDD9-204ENST00000448183 CHMP7Q8WUX9 453 aaPredicted RBP10.05□□□□□ -0.8
NEDD9-204ENST00000448183 CHMP4BQ9H444 224 aaKnown RBP10.05□□□□□ -0.8
NEDD9-204ENST00000448183 MS4A1P11836 297 aa10.04□□□□□ -0.8
NEDD9-204ENST00000448183 FRAT1Q92837 279 aaPredicted RBP10.04□□□□□ -0.8
NEDD9-204ENST00000448183 RBM19Q9Y4C8 960 aaKnown RBP10.04□□□□□ -0.8
NEDD9-204ENST00000448183 MAPK8IP3Q9UPT6 1336 aa10.04□□□□□ -0.8
NEDD9-204ENST00000448183 CCER2I3L3R5 266 aa10.04□□□□□ -0.8
NEDD9-204ENST00000448183 HSP90AB1P08238 724 aaKnown RBP10.04□□□□□ -0.8
NEDD9-204ENST00000448183 NUDCQ9Y266 331 aa10.04□□□□□ -0.8
NEDD9-204ENST00000448183 PPP1R15AO75807 674 aaPredicted RBP10.03□□□□□ -0.8
NEDD9-204ENST00000448183 CFDP1Q9UEE9 299 aaPredicted RBP10.03□□□□□ -0.8
NEDD9-204ENST00000448183 TIMELESSQ9UNS1 1208 aa10.03□□□□□ -0.8
NEDD9-204ENST00000448183 PLCB2Q00722 1185 aa10.03□□□□□ -0.8
NEDD9-204ENST00000448183 L1TD1Q5T7N2 865 aaKnown RBP10.03□□□□□ -0.8
NEDD9-204ENST00000448183 TPRNQ4KMQ1 711 aa10.02□□□□□ -0.8
NEDD9-204ENST00000448183 CEP164Q9UPV0 1460 aa10.02□□□□□ -0.81
NEDD9-204ENST00000448183 WRNQ14191 1432 aaPredicted RBP eCLIP10.01□□□□□ -0.81
NEDD9-204ENST00000448183 C14orf37Q86TY3 774 aa10.01□□□□□ -0.81
NEDD9-204ENST00000448183 BAZ1BQ9UIG0 1483 aaKnown RBP10□□□□□ -0.81
NEDD9-204ENST00000448183 ZBTB7CA1YPR0 619 aa10□□□□□ -0.81
NEDD9-204ENST00000448183 HSCBQ8IWL3 235 aa10□□□□□ -0.81
NEDD9-204ENST00000448183 NRDCO43847 1150 aa9.99□□□□□ -0.81
NEDD9-204ENST00000448183 KCNH8Q96L42 1107 aa9.99□□□□□ -0.81
NEDD9-204ENST00000448183 SENP3Q9H4L4 574 aaPredicted RBP9.99□□□□□ -0.81
NEDD9-204ENST00000448183 GOLGA6L6A8MZA4 724 aa9.99□□□□□ -0.81
NEDD9-204ENST00000448183 A0A0G2JS52 829 aa9.98□□□□□ -0.81
NEDD9-204ENST00000448183 CC2D1BQ5T0F9 858 aaKnown RBP9.98□□□□□ -0.81
NEDD9-204ENST00000448183 CCNB3Q8WWL7 1395 aa9.98□□□□□ -0.81
NEDD9-204ENST00000448183 KIF27Q86VH2 1401 aa9.98□□□□□ -0.81
NEDD9-204ENST00000448183 MSNP26038 577 aaKnown RBP9.97□□□□□ -0.81
NEDD9-204ENST00000448183 CHAF1AQ13111 956 aaPredicted RBP9.97□□□□□ -0.81
NEDD9-204ENST00000448183 SMARCA2P51531 1590 aa9.95□□□□□ -0.82
NEDD9-204ENST00000448183 PLEKHG5O94827 1062 aa9.95□□□□□ -0.82
NEDD9-204ENST00000448183 TMF1P82094 1093 aa9.95□□□□□ -0.82
NEDD9-204ENST00000448183 FGD1P98174 961 aa9.95□□□□□ -0.82
NEDD9-204ENST00000448183 GOLGA6L4A6NEF3 574 aa9.95□□□□□ -0.82
NEDD9-204ENST00000448183 PNNQ9H307 717 aaKnown RBP9.95□□□□□ -0.82
NEDD9-204ENST00000448183 U2SURPO15042 1029 aaKnown RBP9.94□□□□□ -0.82
NEDD9-204ENST00000448183 KCNJ4P48050 445 aa9.94□□□□□ -0.82
NEDD9-204ENST00000448183 CFAP44Q96MT7 982 aa9.93□□□□□ -0.82
NEDD9-204ENST00000448183 OS9Q13438 667 aaPredicted RBP9.93□□□□□ -0.82
NEDD9-204ENST00000448183 POGKQ9P215 609 aa9.92□□□□□ -0.82
NEDD9-204ENST00000448183 TCERG1O14776 1098 aaKnown RBP9.92□□□□□ -0.82
NEDD9-204ENST00000448183 DCAF11Q8TEB1 546 aa9.91□□□□□ -0.82
NEDD9-204ENST00000448183 TSHZ2Q9NRE2 1034 aa9.91□□□□□ -0.82
NEDD9-204ENST00000448183 HSPA5P11021 654 aaKnown RBP9.91□□□□□ -0.82
NEDD9-204ENST00000448183 MCCP23508 829 aa9.91□□□□□ -0.82
NEDD9-204ENST00000448183 SPRYD3Q8NCJ5 442 aa9.9□□□□□ -0.82
NEDD9-204ENST00000448183 FHAD1B1AJZ9 1412 aa9.9□□□□□ -0.82
NEDD9-204ENST00000448183 GBP4Q96PP9 640 aa9.9□□□□□ -0.82
NEDD9-204ENST00000448183 PTMSP20962 102 aa9.9□□□□□ -0.83
NEDD9-204ENST00000448183 RCAN3Q9UKA8 241 aa9.89□□□□□ -0.83
NEDD9-204ENST00000448183 HAP1P54257 671 aaPredicted RBP9.89□□□□□ -0.83
NEDD9-204ENST00000448183 SETD5Q9C0A6 1442 aa9.89□□□□□ -0.83
NEDD9-204ENST00000448183 NAP1L2Q9ULW6 460 aaPredicted RBP9.88□□□□□ -0.83
NEDD9-204ENST00000448183 TAOK2Q9UL54 1235 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms