RNA–Protein interactions for RNA: ENST00000447540.5

CHD9-203, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5 BASIC

Gene CHD9, Length 11,509 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-203ENST00000447540 AMER1Q5JTC6 1135 aaPredicted RBP3.88□□□□□ -1.79
CHD9-203ENST00000447540 GOLGA6L3A6NEY3 463 aa3.87□□□□□ -1.79
CHD9-203ENST00000447540 FKBP8Q14318 412 aa3.87□□□□□ -1.79
CHD9-203ENST00000447540 EEA1Q15075 1411 aa3.87□□□□□ -1.79
CHD9-203ENST00000447540 VSIG10Q8N0Z9 540 aa3.86□□□□□ -1.79
CHD9-203ENST00000447540 NAP1L5Q96NT1 182 aaPredicted RBP3.86□□□□□ -1.79
CHD9-203ENST00000447540 TPM2P07951 284 aa3.85□□□□□ -1.79
CHD9-203ENST00000447540 IPO9Q96P70 1041 aaKnown RBP3.85□□□□□ -1.79
CHD9-203ENST00000447540 HSP90B1P14625 803 aaKnown RBP3.85□□□□□ -1.79
CHD9-203ENST00000447540 BCCIPQ9P287 314 aaKnown RBP eCLIP3.85□□□□□ -1.79
CHD9-203ENST00000447540 MIER1Q8N108 512 aa3.85□□□□□ -1.79
CHD9-203ENST00000447540 CALRP27797 417 aaKnown RBP3.85□□□□□ -1.79
CHD9-203ENST00000447540 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP3.84□□□□□ -1.79
CHD9-203ENST00000447540 RB1CC1Q8TDY2 1594 aa3.84□□□□□ -1.79
CHD9-203ENST00000447540 ANO8Q9HCE9 1232 aaPredicted RBP3.84□□□□□ -1.79
CHD9-203ENST00000447540 BRD2P25440 801 aaKnown RBP3.84□□□□□ -1.79
CHD9-203ENST00000447540 PTMAP06454 111 aaKnown RBP3.84□□□□□ -1.8
CHD9-203ENST00000447540 TSPYL1Q9H0U9 437 aa3.83□□□□□ -1.8
CHD9-203ENST00000447540 CANXP27824 592 aaKnown RBP3.83□□□□□ -1.8
CHD9-203ENST00000447540 PDCL3Q9H2J4 239 aa3.83□□□□□ -1.8
CHD9-203ENST00000447540 GSE1Q14687 1217 aa3.83□□□□□ -1.8
CHD9-203ENST00000447540 CENPJQ9HC77 1338 aaPredicted RBP3.83□□□□□ -1.8
CHD9-203ENST00000447540 BECN1Q14457 450 aa3.83□□□□□ -1.8
CHD9-203ENST00000447540 A0A0U1RQG5 324 aaPredicted RBP3.82□□□□□ -1.8
CHD9-203ENST00000447540 TCERG1O14776 1098 aaKnown RBP3.82□□□□□ -1.8
CHD9-203ENST00000447540 MS4A1P11836 297 aa3.81□□□□□ -1.8
CHD9-203ENST00000447540 TERF1P54274 439 aa3.81□□□□□ -1.8
CHD9-203ENST00000447540 ZMYND15Q9H091 742 aa3.81□□□□□ -1.8
CHD9-203ENST00000447540 WRNQ14191 1432 aaPredicted RBP eCLIP3.81□□□□□ -1.87e-6■■■■■ 31.3
CHD9-203ENST00000447540 CALD1Q05682 793 aaKnown RBP3.81□□□□□ -1.8
CHD9-203ENST00000447540 KIF20AO95235 890 aa3.8□□□□□ -1.8
CHD9-203ENST00000447540 SMARCA2P51531 1590 aa3.8□□□□□ -1.8
CHD9-203ENST00000447540 UPF2Q9HAU5 1272 aaKnown RBP3.8□□□□□ -1.8
CHD9-203ENST00000447540 LOC105371045A0A1W2PR82 267 aa3.8□□□□□ -1.8
CHD9-203ENST00000447540 AXDND1Q5T1B0 1012 aaPredicted RBP3.8□□□□□ -1.8
CHD9-203ENST00000447540 NBR1Q14596 966 aa3.79□□□□□ -1.8
CHD9-203ENST00000447540 SALL2Q9Y467 1007 aaPredicted RBP3.79□□□□□ -1.8
CHD9-203ENST00000447540 FGD1P98174 961 aa3.79□□□□□ -1.8
CHD9-203ENST00000447540 WASHC2CQ9Y4E1 1318 aa3.79□□□□□ -1.8
CHD9-203ENST00000447540 CCDC66A2RUB6 948 aa3.78□□□□□ -1.8
CHD9-203ENST00000447540 VGFO15240 615 aaPredicted RBP3.78□□□□□ -1.8
CHD9-203ENST00000447540 CREBRFQ8IUR6 639 aa3.78□□□□□ -1.8
CHD9-203ENST00000447540 CLGNO14967 610 aa3.78□□□□□ -1.8
CHD9-203ENST00000447540 CSPP1Q1MSJ5 1256 aa3.78□□□□□ -1.8
CHD9-203ENST00000447540 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.78□□□□□ -1.8
CHD9-203ENST00000447540 CTR9Q6PD62 1173 aa3.77□□□□□ -1.81
CHD9-203ENST00000447540 WASHC2AQ641Q2 1341 aa3.77□□□□□ -1.81
CHD9-203ENST00000447540 HMGN5P82970 282 aaKnown RBP3.77□□□□□ -1.81
CHD9-203ENST00000447540 MYH16Q9H6N6 1097 aa3.77□□□□□ -1.81
CHD9-203ENST00000447540 GOLGA6L22H0YM25 854 aa3.77□□□□□ -1.81
CHD9-203ENST00000447540 FAM193AP78312 1265 aa3.77□□□□□ -1.81
CHD9-203ENST00000447540 BCANQ96GW7 911 aa3.76□□□□□ -1.81
CHD9-203ENST00000447540 CLCN1P35523 988 aa3.76□□□□□ -1.81
CHD9-203ENST00000447540 DNTTIP2Q5QJE6 756 aaKnown RBP3.76□□□□□ -1.81
CHD9-203ENST00000447540 PRDM2Q13029 1718 aa3.76□□□□□ -1.81
CHD9-203ENST00000447540 KAT6BQ8WYB5 2073 aa3.75□□□□□ -1.81
CHD9-203ENST00000447540 PDCL2Q8N4E4 241 aa3.75□□□□□ -1.81
CHD9-203ENST00000447540 ABCC8Q09428 1581 aa3.75□□□□□ -1.81
CHD9-203ENST00000447540 NPM2Q86SE8 214 aaKnown RBP3.75□□□□□ -1.81
CHD9-203ENST00000447540 SETQ01105 290 aaPredicted RBP3.75□□□□□ -1.81
CHD9-203ENST00000447540 GOLGA6L6A8MZA4 724 aa3.75□□□□□ -1.81
CHD9-203ENST00000447540 ZBTB4Q9P1Z0 1013 aaPredicted RBP3.75□□□□□ -1.81
CHD9-203ENST00000447540 MSNP26038 577 aaKnown RBP3.74□□□□□ -1.81
CHD9-203ENST00000447540 SMAP1Q8IYB5 467 aaPredicted RBP3.74□□□□□ -1.81
CHD9-203ENST00000447540 GOLGA6L1Q8N7Z2 621 aa3.74□□□□□ -1.81
CHD9-203ENST00000447540 CHAF1AQ13111 956 aaPredicted RBP3.74□□□□□ -1.81
CHD9-203ENST00000447540 AAMPQ13685 434 aa3.74□□□□□ -1.81
CHD9-203ENST00000447540 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.74□□□□□ -1.81
CHD9-203ENST00000447540 CFAP44Q96MT7 982 aa3.74□□□□□ -1.81
CHD9-203ENST00000447540 RBM10P98175 930 aaKnown RBP3.74□□□□□ -1.81
CHD9-203ENST00000447540 GTPBP4Q9BZE4 634 aaKnown RBP3.74□□□□□ -1.81
CHD9-203ENST00000447540 CLSTN1O94985 981 aa3.74□□□□□ -1.81
CHD9-203ENST00000447540 SSR1P43307 286 aaKnown RBP3.73□□□□□ -1.81
CHD9-203ENST00000447540 RSPH4AQ5TD94 716 aa3.73□□□□□ -1.81
CHD9-203ENST00000447540 MRE11P49959 708 aa3.73□□□□□ -1.81
CHD9-203ENST00000447540 IPO4Q8TEX9 1081 aaKnown RBP3.73□□□□□ -1.81
CHD9-203ENST00000447540 LETM1O95202 739 aaPredicted RBP3.73□□□□□ -1.81
CHD9-203ENST00000447540 HNRNPUQ00839 825 aaKnown RBP eCLIP3.73□□□□□ -1.81
CHD9-203ENST00000447540 SKOR2Q2VWA4 1001 aaPredicted RBP3.73□□□□□ -1.81
CHD9-203ENST00000447540 APPP05067 770 aa3.73□□□□□ -1.81
CHD9-203ENST00000447540 UTP14CQ5TAP6 766 aaKnown RBP3.72□□□□□ -1.81
CHD9-203ENST00000447540 MCM5P33992 734 aa3.72□□□□□ -1.81
CHD9-203ENST00000447540 CEP120Q8N960 986 aa3.72□□□□□ -1.81
CHD9-203ENST00000447540 ZNF622Q969S3 477 aaKnown RBP eCLIP3.72□□□□□ -1.816e-7■■■□□ 18.6
CHD9-203ENST00000447540 PEG3Q9GZU2 1588 aa3.72□□□□□ -1.81
CHD9-203ENST00000447540 RBM28Q9NW13 759 aaKnown RBP3.72□□□□□ -1.81
CHD9-203ENST00000447540 FTSJ3Q8IY81 847 aaKnown RBP3.72□□□□□ -1.81
CHD9-203ENST00000447540 CC2D1BQ5T0F9 858 aaKnown RBP3.71□□□□□ -1.81
CHD9-203ENST00000447540 DNAJC2Q99543 621 aaKnown RBP3.71□□□□□ -1.81
CHD9-203ENST00000447540 DDX11L8A8MPP1 907 aa3.71□□□□□ -1.81
CHD9-203ENST00000447540 TNNT3P45378 269 aaPredicted RBP3.71□□□□□ -1.81
CHD9-203ENST00000447540 HS1BP3Q53T59 392 aa3.71□□□□□ -1.81
CHD9-203ENST00000447540 NINLQ9Y2I6 1382 aa3.71□□□□□ -1.82
CHD9-203ENST00000447540 C14orf37Q86TY3 774 aa3.71□□□□□ -1.82
CHD9-203ENST00000447540 TNIKQ9UKE5 1360 aa3.71□□□□□ -1.82
CHD9-203ENST00000447540 RTN4Q9NQC3 1192 aaKnown RBP3.71□□□□□ -1.82
CHD9-203ENST00000447540 BBXQ8WY36 941 aaPredicted RBP3.71□□□□□ -1.82
CHD9-203ENST00000447540 KIF3AQ9Y496 699 aa3.71□□□□□ -1.82
CHD9-203ENST00000447540 ZCCHC6Q5VYS8 1495 aaKnown RBP3.71□□□□□ -1.82
CHD9-203ENST00000447540 ZBED9Q6R2W3 1325 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms