RNA–Protein interactions for RNA: ENST00000447267.4

SDCBP-205, Transcript of syndecan binding protein, humanhuman

TSL 3 BASIC

Gene SDCBP, Length 772 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-205ENST00000447267 ZRANB1Q9UGI0 708 aa11.58□□□□□ -0.56
SDCBP-205ENST00000447267 ZNF579Q8NAF0 562 aaKnown RBP11.57□□□□□ -0.56
SDCBP-205ENST00000447267 POTEIP0CG38 1075 aa11.54□□□□□ -0.56
SDCBP-205ENST00000447267 MIER1Q8N108 512 aa11.52□□□□□ -0.57
SDCBP-205ENST00000447267 PHF12Q96QT6 1004 aa11.52□□□□□ -0.57
SDCBP-205ENST00000447267 NPM1P06748 294 aaKnown RBP eCLIP11.51□□□□□ -0.57
SDCBP-205ENST00000447267 GALR2O43603 387 aaPredicted RBP11.47□□□□□ -0.57
SDCBP-205ENST00000447267 RASEFQ8IZ41 740 aa11.45□□□□□ -0.58
SDCBP-205ENST00000447267 SHROOM4Q9ULL8 1493 aa11.44□□□□□ -0.58
SDCBP-205ENST00000447267 PLCD3Q8N3E9 789 aa11.43□□□□□ -0.58
SDCBP-205ENST00000447267 TSPYL2Q9H2G4 693 aaPredicted RBP11.43□□□□□ -0.58
SDCBP-205ENST00000447267 CCDC61Q9Y6R9 512 aa11.41□□□□□ -0.58
SDCBP-205ENST00000447267 PAK3O75914 559 aaPredicted RBP11.4□□□□□ -0.58
SDCBP-205ENST00000447267 NUBP1P53384 320 aa11.38□□□□□ -0.59
SDCBP-205ENST00000447267 CLCN6P51797 869 aa11.37□□□□□ -0.59
SDCBP-205ENST00000447267 MS4A3Q96HJ5 214 aa11.36□□□□□ -0.59
SDCBP-205ENST00000447267 PLEKHG5O94827 1062 aa11.33□□□□□ -0.6
SDCBP-205ENST00000447267 VASPP50552 380 aaPredicted RBP11.32□□□□□ -0.6
SDCBP-205ENST00000447267 FBXO3Q9UK99 471 aa11.32□□□□□ -0.6
SDCBP-205ENST00000447267 KIF12Q96FN5 646 aa11.31□□□□□ -0.6
SDCBP-205ENST00000447267 DCBLD2Q96PD2 775 aa11.3□□□□□ -0.6
SDCBP-205ENST00000447267 PELP1Q8IZL8 1130 aaKnown RBP11.29□□□□□ -0.6
SDCBP-205ENST00000447267 NESP48681 1621 aa11.28□□□□□ -0.6
SDCBP-205ENST00000447267 TRPC6Q9Y210 931 aa11.28□□□□□ -0.6
SDCBP-205ENST00000447267 MAP3K13O43283 966 aa11.26□□□□□ -0.61
SDCBP-205ENST00000447267 SCRIBQ14160 1630 aa11.26□□□□□ -0.61
SDCBP-205ENST00000447267 CYB5RLQ6IPT4 315 aa11.25□□□□□ -0.61
SDCBP-205ENST00000447267 ZBTB47Q9UFB7 747 aaPredicted RBP11.24□□□□□ -0.61
SDCBP-205ENST00000447267 LHX8Q68G74 356 aa11.23□□□□□ -0.61
SDCBP-205ENST00000447267 MYO15BQ96JP2 1530 aa11.22□□□□□ -0.61
SDCBP-205ENST00000447267 ATMINO43313 823 aaPredicted RBP11.2□□□□□ -0.62
SDCBP-205ENST00000447267 ASTLQ6HA08 431 aaPredicted RBP11.2□□□□□ -0.62
SDCBP-205ENST00000447267 IFNLR1Q8IU57 520 aaPredicted RBP11.19□□□□□ -0.62
SDCBP-205ENST00000447267 THOC2Q8NI27 1593 aaKnown RBP11.18□□□□□ -0.62
SDCBP-205ENST00000447267 POTEB2H3BUK9 544 aa11.17□□□□□ -0.62
SDCBP-205ENST00000447267 RIMBP3CA6NJZ7 1639 aa11.17□□□□□ -0.62
SDCBP-205ENST00000447267 RIMBP3BA6NNM3 1639 aa11.17□□□□□ -0.62
SDCBP-205ENST00000447267 RIMBP3Q9UFD9 1639 aa11.17□□□□□ -0.62
SDCBP-205ENST00000447267 FAM212AQ96EL1 285 aa11.16□□□□□ -0.62
SDCBP-205ENST00000447267 BMP2KQ9NSY1 1161 aaPredicted RBP11.16□□□□□ -0.62
SDCBP-205ENST00000447267 ATN1P54259 1190 aaPredicted RBP11.15□□□□□ -0.62
SDCBP-205ENST00000447267 IFNL1Q8IU54 200 aa11.13□□□□□ -0.63
SDCBP-205ENST00000447267 KLHL34Q8N239 644 aa11.13□□□□□ -0.63
SDCBP-205ENST00000447267 PCDHB13Q9Y5F0 798 aa11.12□□□□□ -0.63
SDCBP-205ENST00000447267 DCAF8Q5TAQ9 597 aa11.11□□□□□ -0.63
SDCBP-205ENST00000447267 SMARCA2P51531 1590 aa11.11□□□□□ -0.63
SDCBP-205ENST00000447267 PYGBP11216 843 aa11.1□□□□□ -0.63
SDCBP-205ENST00000447267 BAZ1AQ9NRL2 1556 aaPredicted RBP11.1□□□□□ -0.63
SDCBP-205ENST00000447267 TTLL13PA6NNM8 815 aa11.08□□□□□ -0.64
SDCBP-205ENST00000447267 TIE1P35590 1138 aa11.08□□□□□ -0.64
SDCBP-205ENST00000447267 SGIP1Q9BQI5 828 aa11.08□□□□□ -0.64
SDCBP-205ENST00000447267 POTEFA5A3E0 1075 aa11.07□□□□□ -0.64
SDCBP-205ENST00000447267 POTEJP0CG39 1038 aa11.07□□□□□ -0.64
SDCBP-205ENST00000447267 METRNQ9UJH8 293 aa11.07□□□□□ -0.64
SDCBP-205ENST00000447267 ARHGEF11O15085 1522 aa11.05□□□□□ -0.64
SDCBP-205ENST00000447267 PCDHB8Q9UN66 801 aa11.03□□□□□ -0.64
SDCBP-205ENST00000447267 SLC39A7Q92504 469 aa11.02□□□□□ -0.65
SDCBP-205ENST00000447267 SPOCK2Q92563 424 aa11.02□□□□□ -0.65
SDCBP-205ENST00000447267 OTUD5Q96G74 571 aa11.02□□□□□ -0.65
SDCBP-205ENST00000447267 C7P10643 843 aa11.01□□□□□ -0.65
SDCBP-205ENST00000447267 NCAPD3P42695 1498 aa11□□□□□ -0.65
SDCBP-205ENST00000447267 GSE1Q14687 1217 aa10.99□□□□□ -0.65
SDCBP-205ENST00000447267 COLQQ9Y215 455 aaPredicted RBP10.99□□□□□ -0.65
SDCBP-205ENST00000447267 TRIM35Q9UPQ4 493 aa10.98□□□□□ -0.65
SDCBP-205ENST00000447267 TMEM106CQ9BVX2 250 aa10.97□□□□□ -0.65
SDCBP-205ENST00000447267 CHRM1P11229 460 aaPredicted RBP10.95□□□□□ -0.66
SDCBP-205ENST00000447267 CIZ1Q9ULV3 898 aaPredicted RBP10.92□□□□□ -0.66
SDCBP-205ENST00000447267 ARAP1Q96P48 1450 aa10.91□□□□□ -0.66
SDCBP-205ENST00000447267 PDS5BQ9NTI5 1447 aa10.9□□□□□ -0.66
SDCBP-205ENST00000447267 KIF21AQ7Z4S6 1674 aa10.89□□□□□ -0.67
SDCBP-205ENST00000447267 KDM4FA0A1W2PPD8 638 aa10.89□□□□□ -0.67
SDCBP-205ENST00000447267 SOCS7O14512 581 aa10.88□□□□□ -0.67
SDCBP-205ENST00000447267 ILDR2Q71H61 639 aa10.88□□□□□ -0.67
SDCBP-205ENST00000447267 IER5LQ5T953 404 aa10.87□□□□□ -0.67
SDCBP-205ENST00000447267 LMTK3Q96Q04 1460 aa10.87□□□□□ -0.67
SDCBP-205ENST00000447267 MRC2Q9UBG0 1479 aa10.86□□□□□ -0.67
SDCBP-205ENST00000447267 ATAD2BQ9ULI0 1458 aa10.86□□□□□ -0.67
SDCBP-205ENST00000447267 IRX5P78411 483 aaPredicted RBP10.85□□□□□ -0.67
SDCBP-205ENST00000447267 ZNF467Q7Z7K2 595 aaPredicted RBP10.85□□□□□ -0.67
SDCBP-205ENST00000447267 FBXO41Q8TF61 875 aa10.84□□□□□ -0.67
SDCBP-205ENST00000447267 SEC24BO95487 1268 aa10.82□□□□□ -0.68
SDCBP-205ENST00000447267 PSEN1P49768 467 aa10.82□□□□□ -0.68
SDCBP-205ENST00000447267 LAMC3Q9Y6N6 1575 aa10.81□□□□□ -0.68
SDCBP-205ENST00000447267 WDR62O43379 1518 aa10.8□□□□□ -0.68
SDCBP-205ENST00000447267 RNF25Q96BH1 459 aaPredicted RBP10.8□□□□□ -0.68
SDCBP-205ENST00000447267 PDAP1Q13442 181 aaKnown RBP10.77□□□□□ -0.69
SDCBP-205ENST00000447267 PLCG2P16885 1265 aa10.75□□□□□ -0.69
SDCBP-205ENST00000447267 PDCD7Q8N8D1 485 aaKnown RBP10.75□□□□□ -0.69
SDCBP-205ENST00000447267 MAMSTRQ6ZN01 415 aa10.74□□□□□ -0.69
SDCBP-205ENST00000447267 LCE2DQ5TA82 110 aaPredicted RBP10.73□□□□□ -0.69
SDCBP-205ENST00000447267 OCEL1Q9H607 264 aa10.72□□□□□ -0.69
SDCBP-205ENST00000447267 SCUBE2Q9NQ36 999 aa10.72□□□□□ -0.69
SDCBP-205ENST00000447267 HMGXB3Q12766 1538 aa10.7□□□□□ -0.7
SDCBP-205ENST00000447267 DCAF1Q9Y4B6 1507 aa10.7□□□□□ -0.7
SDCBP-205ENST00000447267 CABP2Q9NPB3 220 aa10.69□□□□□ -0.7
SDCBP-205ENST00000447267 CADPSQ9ULU8 1353 aa10.68□□□□□ -0.7
SDCBP-205ENST00000447267 ZCCHC6Q5VYS8 1495 aaKnown RBP10.68□□□□□ -0.7
SDCBP-205ENST00000447267 MKRN3Q13064 507 aaKnown RBP10.66□□□□□ -0.7
SDCBP-205ENST00000447267 PKD2Q13563 968 aa10.66□□□□□ -0.7
SDCBP-205ENST00000447267 DPY19L2Q6NUT2 758 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms