RNA–Protein interactions for RNA: ENST00000437966.3

CHRNA7-202, Transcript of cholinergic receptor nicotinic alpha 7 subunit, humanhuman

TSL 2

Gene CHRNA7, Length 1,788 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA7-202ENST00000437966 VPS8Q8N3P4 1428 aa30.6■■■□□ 2.49
CHRNA7-202ENST00000437966 P3H3Q8IVL6 736 aa30.56■■■□□ 2.48
CHRNA7-202ENST00000437966 TTBK1Q5TCY1 1321 aaPredicted RBP30.55■■■□□ 2.48
CHRNA7-202ENST00000437966 CTTNBP2Q8WZ74 1663 aa30.55■■■□□ 2.48
CHRNA7-202ENST00000437966 TRIM26Q12899 539 aaPredicted RBP30.52■■■□□ 2.48
CHRNA7-202ENST00000437966 FBLN2P98095 1184 aa30.48■■■□□ 2.47
CHRNA7-202ENST00000437966 MAGI1Q96QZ7 1491 aaPredicted RBP30.46■■■□□ 2.47
CHRNA7-202ENST00000437966 CHMP7Q8WUX9 453 aaPredicted RBP30.46■■■□□ 2.47
CHRNA7-202ENST00000437966 GRIN2AQ12879 1464 aa30.41■■■□□ 2.46
CHRNA7-202ENST00000437966 SYNJ2O15056 1496 aa30.39■■■□□ 2.46
CHRNA7-202ENST00000437966 FHOD3Q2V2M9 1422 aa30.38■■■□□ 2.45
CHRNA7-202ENST00000437966 APLP2Q06481 763 aa30.37■■■□□ 2.45
CHRNA7-202ENST00000437966 EFCAB5A4FU69 1503 aa30.32■■■□□ 2.44
CHRNA7-202ENST00000437966 IQGAP2Q13576 1575 aa30.3■■■□□ 2.44
CHRNA7-202ENST00000437966 KIAA0586Q9BVV6 1533 aa30.25■■■□□ 2.43
CHRNA7-202ENST00000437966 SAMD9Q5K651 1589 aa30.25■■■□□ 2.43
CHRNA7-202ENST00000437966 CEP170Q5SW79 1584 aa30.24■■■□□ 2.43
CHRNA7-202ENST00000437966 ATP1B4Q9UN42 357 aaPredicted RBP30.23■■■□□ 2.43
CHRNA7-202ENST00000437966 KANK4Q5T7N3 995 aaPredicted RBP30.2■■■□□ 2.42
CHRNA7-202ENST00000437966 NUP160Q12769 1436 aa30.16■■■□□ 2.42
CHRNA7-202ENST00000437966 PCF11O94913 1555 aaKnown RBP30.14■■■□□ 2.42
CHRNA7-202ENST00000437966 UGGT2Q9NYU1 1516 aa30.14■■■□□ 2.41
CHRNA7-202ENST00000437966 FMN1Q68DA7 1419 aa30.1■■■□□ 2.41
CHRNA7-202ENST00000437966 CHD1O14646 1710 aa30.09■■■□□ 2.41
CHRNA7-202ENST00000437966 CASKIN1Q8WXD9 1431 aa30.07■■■□□ 2.4
CHRNA7-202ENST00000437966 DISP1Q96F81 1524 aa30.06■■■□□ 2.4
CHRNA7-202ENST00000437966 JPH4Q96JJ6 628 aa30.06■■■□□ 2.4
CHRNA7-202ENST00000437966 FYCO1Q9BQS8 1478 aa30.03■■■□□ 2.4
CHRNA7-202ENST00000437966 TIAM1Q13009 1591 aa30.01■■■□□ 2.39
CHRNA7-202ENST00000437966 KIAA0556O60303 1618 aa30■■■□□ 2.39
CHRNA7-202ENST00000437966 MAP3K1Q13233 1512 aa29.95■■■□□ 2.38
CHRNA7-202ENST00000437966 LRRC9Q6ZRR7 1453 aa29.9■■■□□ 2.38
CHRNA7-202ENST00000437966 CFAP43Q8NDM7 1665 aa29.89■■■□□ 2.38
CHRNA7-202ENST00000437966 ARID3CA6NKF2 412 aa29.89■■■□□ 2.38
CHRNA7-202ENST00000437966 CARMIL2Q6F5E8 1435 aa29.87■■■□□ 2.37
CHRNA7-202ENST00000437966 LRRIQ1Q96JM4 1722 aa29.87■■■□□ 2.37
CHRNA7-202ENST00000437966 PRG4Q92954 1404 aaPredicted RBP29.84■■■□□ 2.37
CHRNA7-202ENST00000437966 HECW1Q76N89 1606 aa29.77■■■□□ 2.36
CHRNA7-202ENST00000437966 HNRNPUL2Q1KMD3 747 aaKnown RBP29.76■■■□□ 2.35
CHRNA7-202ENST00000437966 EPRSP07814 1512 aaKnown RBP29.73■■■□□ 2.35
CHRNA7-202ENST00000437966 CDK13Q14004 1512 aaKnown RBP29.73■■■□□ 2.35
CHRNA7-202ENST00000437966 PLB1Q6P1J6 1458 aa29.73■■■□□ 2.35
CHRNA7-202ENST00000437966 MTUS2Q5JR59 1369 aa29.73■■■□□ 2.35
CHRNA7-202ENST00000437966 PHLDB1Q86UU1 1377 aa29.71■■■□□ 2.35
CHRNA7-202ENST00000437966 RAPGEF6Q8TEU7 1601 aa29.71■■■□□ 2.35
CHRNA7-202ENST00000437966 CCDC18Q5T9S5 1454 aa29.7■■■□□ 2.35
CHRNA7-202ENST00000437966 CLASP1Q7Z460 1538 aa29.7■■■□□ 2.35
CHRNA7-202ENST00000437966 SHROOM2Q13796 1616 aa29.7■■■□□ 2.35
CHRNA7-202ENST00000437966 NUP153P49790 1475 aaKnown RBP29.69■■■□□ 2.34
CHRNA7-202ENST00000437966 ERCC6L2Q5T890 1561 aa29.69■■■□□ 2.34
CHRNA7-202ENST00000437966 MAGI3Q5TCQ9 1506 aa29.67■■■□□ 2.34
CHRNA7-202ENST00000437966 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.66■■■□□ 2.34
CHRNA7-202ENST00000437966 RRBP1Q9P2E9 1410 aaKnown RBP29.65■■■□□ 2.34
CHRNA7-202ENST00000437966 PTPRGP23470 1445 aa29.65■■■□□ 2.34
CHRNA7-202ENST00000437966 HRCP23327 699 aa29.64■■■□□ 2.34
CHRNA7-202ENST00000437966 CCNB3Q8WWL7 1395 aa29.62■■■□□ 2.33
CHRNA7-202ENST00000437966 EHBP1L1Q8N3D4 1523 aa29.58■■■□□ 2.33
CHRNA7-202ENST00000437966 ABCA8O94911 1581 aa29.57■■■□□ 2.32
CHRNA7-202ENST00000437966 ITGAEP38570 1179 aa29.56■■■□□ 2.32
CHRNA7-202ENST00000437966 NCOA2Q15596 1464 aa29.55■■■□□ 2.32
CHRNA7-202ENST00000437966 OSCARQ8IYS5 282 aa29.54■■■□□ 2.32
CHRNA7-202ENST00000437966 FAM50AQ14320 339 aaKnown RBP29.52■■■□□ 2.32
CHRNA7-202ENST00000437966 SUPT6HQ7KZ85 1726 aaKnown RBP29.5■■■□□ 2.31
CHRNA7-202ENST00000437966 CDK11AQ9UQ88 783 aaPredicted RBP29.47■■■□□ 2.31
CHRNA7-202ENST00000437966 ATP10BO94823 1461 aa29.46■■■□□ 2.31
CHRNA7-202ENST00000437966 UACAQ9BZF9 1416 aa29.44■■■□□ 2.3
CHRNA7-202ENST00000437966 ARHGEF11O15085 1522 aa29.43■■■□□ 2.3
CHRNA7-202ENST00000437966 FGD6Q6ZV73 1430 aa29.42■■■□□ 2.3
CHRNA7-202ENST00000437966 MYOM3Q5VTT5 1437 aa29.41■■■□□ 2.3
CHRNA7-202ENST00000437966 CCER1Q8TC90 406 aaPredicted RBP29.39■■■□□ 2.29
CHRNA7-202ENST00000437966 TROQ12816 1431 aaPredicted RBP29.37■■■□□ 2.29
CHRNA7-202ENST00000437966 PLEKHD1A6NEE1 506 aa29.36■■■□□ 2.29
CHRNA7-202ENST00000437966 ABCC2Q92887 1545 aa29.31■■■□□ 2.28
CHRNA7-202ENST00000437966 KIF14Q15058 1648 aa29.28■■■□□ 2.28
CHRNA7-202ENST00000437966 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.27■■■□□ 2.28
CHRNA7-202ENST00000437966 PTPN23Q9H3S7 1636 aa29.26■■■□□ 2.27
CHRNA7-202ENST00000437966 UHRF1BP1LA0JNW5 1464 aa29.2■■■□□ 2.26
CHRNA7-202ENST00000437966 ADCY10Q96PN6 1610 aa29.19■■■□□ 2.26
CHRNA7-202ENST00000437966 PTPRKQ15262 1439 aa29.18■■■□□ 2.26
CHRNA7-202ENST00000437966 MIA2Q96PC5 1412 aa29.18■■■□□ 2.26
CHRNA7-202ENST00000437966 ZNF644Q9H582 1327 aaPredicted RBP29.18■■■□□ 2.26
CHRNA7-202ENST00000437966 ZEB1P37275 1124 aaPredicted RBP29.18■■■□□ 2.26
CHRNA7-202ENST00000437966 TCOF1Q13428 1488 aaKnown RBP29.17■■■□□ 2.26
CHRNA7-202ENST00000437966 GPATCH8Q9UKJ3 1502 aaKnown RBP29.16■■■□□ 2.26
CHRNA7-202ENST00000437966 CFDP1Q9UEE9 299 aaPredicted RBP29.14■■■□□ 2.26
CHRNA7-202ENST00000437966 ZCCHC11Q5TAX3 1644 aaKnown RBP29.13■■■□□ 2.25
CHRNA7-202ENST00000437966 KCNH8Q96L42 1107 aa29.13■■■□□ 2.25
CHRNA7-202ENST00000437966 ABCC10Q5T3U5 1492 aa29.12■■■□□ 2.25
CHRNA7-202ENST00000437966 ZNF777Q9ULD5 760 aaPredicted RBP29.12■■■□□ 2.25
CHRNA7-202ENST00000437966 KDM5BQ9UGL1 1544 aa29.11■■■□□ 2.25
CHRNA7-202ENST00000437966 SETD5Q9C0A6 1442 aa29.1■■■□□ 2.25
CHRNA7-202ENST00000437966 RAB3GAP2Q9H2M9 1393 aa29.1■■■□□ 2.25
CHRNA7-202ENST00000437966 CHIC2Q9UKJ5 165 aa29.09■■■□□ 2.25
CHRNA7-202ENST00000437966 ITSN2Q9NZM3 1697 aa29.03■■■□□ 2.24
CHRNA7-202ENST00000437966 CDC42BPAQ5VT25 1732 aa29.03■■■□□ 2.24
CHRNA7-202ENST00000437966 CAMSAP2Q08AD1 1489 aa29.01■■■□□ 2.23
CHRNA7-202ENST00000437966 DHX57Q6P158 1386 aaKnown RBP29■■■□□ 2.23
CHRNA7-202ENST00000437966 RRP7BPQ9NSQ0 103 aa29■■■□□ 2.23
CHRNA7-202ENST00000437966 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.98■■■□□ 2.23
CHRNA7-202ENST00000437966 ABCC5O15440 1437 aa28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms