RNA–Protein interactions for RNA: ENST00000429762.7

VSX1-205, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 1,977 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-205ENST00000429762 VPS8Q8N3P4 1428 aa34.69■■■■□ 3.14
VSX1-205ENST00000429762 PCGF6Q9BYE7 350 aa34.65■■■■□ 3.14
VSX1-205ENST00000429762 TTBK1Q5TCY1 1321 aaPredicted RBP34.57■■■■□ 3.12
VSX1-205ENST00000429762 MAGI1Q96QZ7 1491 aaPredicted RBP34.55■■■■□ 3.12
VSX1-205ENST00000429762 P3H3Q8IVL6 736 aa34.54■■■■□ 3.12
VSX1-205ENST00000429762 TRIM26Q12899 539 aaPredicted RBP34.52■■■■□ 3.12
VSX1-205ENST00000429762 GRIN2AQ12879 1464 aa34.49■■■■□ 3.11
VSX1-205ENST00000429762 SYNJ2O15056 1496 aa34.45■■■■□ 3.11
VSX1-205ENST00000429762 FBLN2P98095 1184 aa34.44■■■■□ 3.1
VSX1-205ENST00000429762 FHOD3Q2V2M9 1422 aa34.44■■■■□ 3.1
VSX1-205ENST00000429762 CHMP7Q8WUX9 453 aaPredicted RBP34.42■■■■□ 3.1
VSX1-205ENST00000429762 EFCAB5A4FU69 1503 aa34.42■■■■□ 3.1
VSX1-205ENST00000429762 IQGAP2Q13576 1575 aa34.4■■■■□ 3.1
VSX1-205ENST00000429762 SAMD9Q5K651 1589 aa34.36■■■■□ 3.09
VSX1-205ENST00000429762 APLP2Q06481 763 aa34.33■■■■□ 3.09
VSX1-205ENST00000429762 CEP170Q5SW79 1584 aa34.32■■■■□ 3.09
VSX1-205ENST00000429762 KIAA0586Q9BVV6 1533 aa34.27■■■■□ 3.08
VSX1-205ENST00000429762 PCF11O94913 1555 aaKnown RBP34.26■■■■□ 3.07
VSX1-205ENST00000429762 CHD1O14646 1710 aa34.2■■■■□ 3.07
VSX1-205ENST00000429762 NUP160Q12769 1436 aa34.19■■■■□ 3.06
VSX1-205ENST00000429762 UGGT2Q9NYU1 1516 aa34.19■■■■□ 3.06
VSX1-205ENST00000429762 ATP1B4Q9UN42 357 aaPredicted RBP34.16■■■■□ 3.06
VSX1-205ENST00000429762 KANK4Q5T7N3 995 aaPredicted RBP34.15■■■■□ 3.06
VSX1-205ENST00000429762 FMN1Q68DA7 1419 aa34.11■■■■□ 3.05
VSX1-205ENST00000429762 CASKIN1Q8WXD9 1431 aa34.08■■■■□ 3.05
VSX1-205ENST00000429762 DISP1Q96F81 1524 aa34.08■■■■□ 3.05
VSX1-205ENST00000429762 TIAM1Q13009 1591 aa34.07■■■■□ 3.05
VSX1-205ENST00000429762 FYCO1Q9BQS8 1478 aa34.07■■■■□ 3.05
VSX1-205ENST00000429762 KIAA0556O60303 1618 aa34.07■■■■□ 3.04
VSX1-205ENST00000429762 CFAP43Q8NDM7 1665 aa34.01■■■■□ 3.03
VSX1-205ENST00000429762 JPH4Q96JJ6 628 aa33.98■■■■□ 3.03
VSX1-205ENST00000429762 MAP3K1Q13233 1512 aa33.97■■■■□ 3.03
VSX1-205ENST00000429762 LRRIQ1Q96JM4 1722 aa33.96■■■■□ 3.03
VSX1-205ENST00000429762 LRRC9Q6ZRR7 1453 aa33.9■■■■□ 3.02
VSX1-205ENST00000429762 CARMIL2Q6F5E8 1435 aa33.83■■■■□ 3.01
VSX1-205ENST00000429762 HECW1Q76N89 1606 aa33.82■■■■□ 3
VSX1-205ENST00000429762 ARID3CA6NKF2 412 aa33.8■■■■□ 3
VSX1-205ENST00000429762 PRG4Q92954 1404 aaPredicted RBP33.78■■■■□ 3
VSX1-205ENST00000429762 RAPGEF6Q8TEU7 1601 aa33.74■■■□□ 2.99
VSX1-205ENST00000429762 SHROOM2Q13796 1616 aa33.73■■■□□ 2.99
VSX1-205ENST00000429762 CDK13Q14004 1512 aaKnown RBP33.73■■■□□ 2.99
VSX1-205ENST00000429762 EPRSP07814 1512 aaKnown RBP33.71■■■□□ 2.99
VSX1-205ENST00000429762 CLASP1Q7Z460 1538 aa33.71■■■□□ 2.99
VSX1-205ENST00000429762 CCDC18Q5T9S5 1454 aa33.69■■■□□ 2.98
VSX1-205ENST00000429762 PLB1Q6P1J6 1458 aa33.69■■■□□ 2.98
VSX1-205ENST00000429762 MTUS2Q5JR59 1369 aa33.67■■■□□ 2.98
VSX1-205ENST00000429762 ERCC6L2Q5T890 1561 aa33.67■■■□□ 2.98
VSX1-205ENST00000429762 MAGI3Q5TCQ9 1506 aa33.66■■■□□ 2.98
VSX1-205ENST00000429762 NUP153P49790 1475 aaKnown RBP33.66■■■□□ 2.98
VSX1-205ENST00000429762 PHLDB1Q86UU1 1377 aa33.65■■■□□ 2.98
VSX1-205ENST00000429762 HNRNPUL2Q1KMD3 747 aaKnown RBP33.65■■■□□ 2.98
VSX1-205ENST00000429762 RRBP1Q9P2E9 1410 aaKnown RBP33.62■■■□□ 2.97
VSX1-205ENST00000429762 EHBP1L1Q8N3D4 1523 aa33.58■■■□□ 2.97
VSX1-205ENST00000429762 CCNB3Q8WWL7 1395 aa33.55■■■□□ 2.96
VSX1-205ENST00000429762 ABCA8O94911 1581 aa33.55■■■□□ 2.96
VSX1-205ENST00000429762 PTPRGP23470 1445 aa33.55■■■□□ 2.96
VSX1-205ENST00000429762 HRCP23327 699 aa33.54■■■□□ 2.96
VSX1-205ENST00000429762 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.52■■■□□ 2.96
VSX1-205ENST00000429762 SUPT6HQ7KZ85 1726 aaKnown RBP33.52■■■□□ 2.96
VSX1-205ENST00000429762 NCOA2Q15596 1464 aa33.5■■■□□ 2.95
VSX1-205ENST00000429762 ITGAEP38570 1179 aa33.42■■■□□ 2.94
VSX1-205ENST00000429762 FAM50AQ14320 339 aaKnown RBP33.4■■■□□ 2.94
VSX1-205ENST00000429762 ARHGEF11O15085 1522 aa33.39■■■□□ 2.94
VSX1-205ENST00000429762 OSCARQ8IYS5 282 aa33.36■■■□□ 2.93
VSX1-205ENST00000429762 FGD6Q6ZV73 1430 aa33.36■■■□□ 2.93
VSX1-205ENST00000429762 ATP10BO94823 1461 aa33.35■■■□□ 2.93
VSX1-205ENST00000429762 UACAQ9BZF9 1416 aa33.35■■■□□ 2.93
VSX1-205ENST00000429762 MYOM3Q5VTT5 1437 aa33.33■■■□□ 2.93
VSX1-205ENST00000429762 CDK11AQ9UQ88 783 aaPredicted RBP33.32■■■□□ 2.92
VSX1-205ENST00000429762 TROQ12816 1431 aaPredicted RBP33.29■■■□□ 2.92
VSX1-205ENST00000429762 KIF14Q15058 1648 aa33.25■■■□□ 2.91
VSX1-205ENST00000429762 ABCC2Q92887 1545 aa33.25■■■□□ 2.91
VSX1-205ENST00000429762 CCER1Q8TC90 406 aaPredicted RBP33.24■■■□□ 2.91
VSX1-205ENST00000429762 PTPN23Q9H3S7 1636 aa33.21■■■□□ 2.91
VSX1-205ENST00000429762 ADCY10Q96PN6 1610 aa33.18■■■□□ 2.9
VSX1-205ENST00000429762 PLEKHD1A6NEE1 506 aa33.18■■■□□ 2.9
VSX1-205ENST00000429762 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.15■■■□□ 2.9
VSX1-205ENST00000429762 UHRF1BP1LA0JNW5 1464 aa33.09■■■□□ 2.89
VSX1-205ENST00000429762 TCOF1Q13428 1488 aaKnown RBP33.09■■■□□ 2.89
VSX1-205ENST00000429762 ZCCHC11Q5TAX3 1644 aaKnown RBP33.09■■■□□ 2.89
VSX1-205ENST00000429762 MIA2Q96PC5 1412 aa33.07■■■□□ 2.88
VSX1-205ENST00000429762 PTPRKQ15262 1439 aa33.05■■■□□ 2.88
VSX1-205ENST00000429762 ABCC10Q5T3U5 1492 aa33.02■■■□□ 2.88
VSX1-205ENST00000429762 GPATCH8Q9UKJ3 1502 aaKnown RBP33.02■■■□□ 2.88
VSX1-205ENST00000429762 ITSN2Q9NZM3 1697 aa33.02■■■□□ 2.88
VSX1-205ENST00000429762 ZNF644Q9H582 1327 aaPredicted RBP33■■■□□ 2.87
VSX1-205ENST00000429762 ZEB1P37275 1124 aaPredicted RBP33■■■□□ 2.87
VSX1-205ENST00000429762 KDM5BQ9UGL1 1544 aa33■■■□□ 2.87
VSX1-205ENST00000429762 CDC42BPAQ5VT25 1732 aa32.99■■■□□ 2.87
VSX1-205ENST00000429762 RAB3GAP2Q9H2M9 1393 aa32.97■■■□□ 2.87
VSX1-205ENST00000429762 CFDP1Q9UEE9 299 aaPredicted RBP32.95■■■□□ 2.87
VSX1-205ENST00000429762 SETD5Q9C0A6 1442 aa32.95■■■□□ 2.86
VSX1-205ENST00000429762 ZNF777Q9ULD5 760 aaPredicted RBP32.92■■■□□ 2.86
VSX1-205ENST00000429762 CAMSAP2Q08AD1 1489 aa32.91■■■□□ 2.86
VSX1-205ENST00000429762 KCNH8Q96L42 1107 aa32.9■■■□□ 2.86
VSX1-205ENST00000429762 TTC37Q6PGP7 1564 aa32.89■■■□□ 2.86
VSX1-205ENST00000429762 CHIC2Q9UKJ5 165 aa32.89■■■□□ 2.86
VSX1-205ENST00000429762 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.86■■■□□ 2.85
VSX1-205ENST00000429762 DHX57Q6P158 1386 aaKnown RBP32.86■■■□□ 2.85
VSX1-205ENST00000429762 DNMT1P26358 1616 aaKnown RBP32.83■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms