RNA–Protein interactions for RNA: ENST00000429277.6

LDB3-205, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 5,436 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-205ENST00000429277 PLEKHD1A6NEE1 506 aa16.89■□□□□ 0.29
LDB3-205ENST00000429277 BECN1Q14457 450 aa16.88■□□□□ 0.29
LDB3-205ENST00000429277 DDRGK1Q96HY6 314 aa16.88■□□□□ 0.29
LDB3-205ENST00000429277 PPP1R15AO75807 674 aaPredicted RBP16.87■□□□□ 0.29
LDB3-205ENST00000429277 CFAP53Q96M91 514 aa16.87■□□□□ 0.29
LDB3-205ENST00000429277 CCDC180Q9P1Z9 1646 aa16.86■□□□□ 0.29
LDB3-205ENST00000429277 NCLP19338 710 aaKnown RBP16.84■□□□□ 0.29
LDB3-205ENST00000429277 GOLGA3Q08378 1498 aa16.84■□□□□ 0.29
LDB3-205ENST00000429277 GOLGA6L22H0YM25 854 aa16.82■□□□□ 0.28
LDB3-205ENST00000429277 SCAF1Q9H7N4 1312 aaKnown RBP16.81■□□□□ 0.28
LDB3-205ENST00000429277 RB1CC1Q8TDY2 1594 aa16.8■□□□□ 0.28
LDB3-205ENST00000429277 RRP7BPQ9NSQ0 103 aa16.76■□□□□ 0.27
LDB3-205ENST00000429277 CASC1Q6TDU7 716 aa16.75■□□□□ 0.27
LDB3-205ENST00000429277 KNSTRNQ9Y448 316 aa16.75■□□□□ 0.27
LDB3-205ENST00000429277 CHMP4BQ9H444 224 aaKnown RBP16.75■□□□□ 0.27
LDB3-205ENST00000429277 C14orf37Q86TY3 774 aa16.73■□□□□ 0.27
LDB3-205ENST00000429277 KIF27Q86VH2 1401 aa16.72■□□□□ 0.27
LDB3-205ENST00000429277 CFDP1Q9UEE9 299 aaPredicted RBP16.72■□□□□ 0.27
LDB3-205ENST00000429277 NBR1Q14596 966 aa16.71■□□□□ 0.27
LDB3-205ENST00000429277 KCNH8Q96L42 1107 aa16.71■□□□□ 0.26
LDB3-205ENST00000429277 NUDCQ9Y266 331 aa16.71■□□□□ 0.26
LDB3-205ENST00000429277 A0A0G2JS52 829 aa16.7■□□□□ 0.26
LDB3-205ENST00000429277 CEP162Q5TB80 1403 aa16.7■□□□□ 0.26
LDB3-205ENST00000429277 TRIM44Q96DX7 344 aaPredicted RBP16.7■□□□□ 0.26
LDB3-205ENST00000429277 ZRSR1Q15695 479 aaKnown RBP16.69■□□□□ 0.26
LDB3-205ENST00000429277 WRNQ14191 1432 aaPredicted RBP eCLIP16.68■□□□□ 0.26
LDB3-205ENST00000429277 MS4A1P11836 297 aa16.68■□□□□ 0.26
LDB3-205ENST00000429277 MIER1Q8N108 512 aa16.68■□□□□ 0.26
LDB3-205ENST00000429277 CEP164Q9UPV0 1460 aa16.67■□□□□ 0.26
LDB3-205ENST00000429277 ZBTB7CA1YPR0 619 aa16.67■□□□□ 0.26
LDB3-205ENST00000429277 MAPK8IP3Q9UPT6 1336 aa16.67■□□□□ 0.26
LDB3-205ENST00000429277 HAP1P54257 671 aaPredicted RBP16.67■□□□□ 0.26
LDB3-205ENST00000429277 FTSJ3Q8IY81 847 aaKnown RBP16.65■□□□□ 0.26
LDB3-205ENST00000429277 PNNQ9H307 717 aaKnown RBP16.65■□□□□ 0.26
LDB3-205ENST00000429277 CARD11Q9BXL7 1154 aa16.65■□□□□ 0.26
LDB3-205ENST00000429277 TNIKQ9UKE5 1360 aa16.64■□□□□ 0.25
LDB3-205ENST00000429277 RGL3Q3MIN7 710 aa16.64■□□□□ 0.25
LDB3-205ENST00000429277 BAZ1BQ9UIG0 1483 aaKnown RBP16.63■□□□□ 0.25
LDB3-205ENST00000429277 PPM1GO15355 546 aaPredicted RBP16.62■□□□□ 0.25
LDB3-205ENST00000429277 ARXQ96QS3 562 aa16.61■□□□□ 0.25
LDB3-205ENST00000429277 ARID4BQ4LE39 1312 aaPredicted RBP16.61■□□□□ 0.25
LDB3-205ENST00000429277 NACADO15069 1562 aa16.6■□□□□ 0.25
LDB3-205ENST00000429277 IRX6P78412 446 aaPredicted RBP16.59■□□□□ 0.25
LDB3-205ENST00000429277 HIRIP3Q9BW71 556 aaPredicted RBP16.58■□□□□ 0.24
LDB3-205ENST00000429277 FHAD1B1AJZ9 1412 aa16.58■□□□□ 0.24
LDB3-205ENST00000429277 POGKQ9P215 609 aa16.58■□□□□ 0.24
LDB3-205ENST00000429277 HDGFP51858 240 aaKnown RBP16.57■□□□□ 0.24
LDB3-205ENST00000429277 TIMELESSQ9UNS1 1208 aa16.56■□□□□ 0.24
LDB3-205ENST00000429277 PTMAP06454 111 aaKnown RBP16.55■□□□□ 0.24
LDB3-205ENST00000429277 KANK1Q14678 1352 aa16.54■□□□□ 0.24
LDB3-205ENST00000429277 CFAP44Q96MT7 982 aa16.53■□□□□ 0.24
LDB3-205ENST00000429277 CCNB3Q8WWL7 1395 aa16.52■□□□□ 0.24
LDB3-205ENST00000429277 PPP4R2Q9NY27 417 aa16.52■□□□□ 0.23
LDB3-205ENST00000429277 TNNT2P45379 298 aaPredicted RBP16.51■□□□□ 0.23
LDB3-205ENST00000429277 TMF1P82094 1093 aa16.5■□□□□ 0.23
LDB3-205ENST00000429277 GOLGA6L6A8MZA4 724 aa16.5■□□□□ 0.23
LDB3-205ENST00000429277 ERICH6BQ5W0A0 696 aa16.5■□□□□ 0.23
LDB3-205ENST00000429277 NRDCO43847 1150 aa16.48■□□□□ 0.23
LDB3-205ENST00000429277 PLEKHG5O94827 1062 aa16.46■□□□□ 0.23
LDB3-205ENST00000429277 ERCC6Q03468 1493 aa16.46■□□□□ 0.23
LDB3-205ENST00000429277 LAS1LQ9Y4W2 734 aaKnown RBP16.46■□□□□ 0.22
LDB3-205ENST00000429277 SUPT16HQ9Y5B9 1047 aaKnown RBP16.45■□□□□ 0.22
LDB3-205ENST00000429277 OS9Q13438 667 aaPredicted RBP16.44■□□□□ 0.22
LDB3-205ENST00000429277 NEUROD2Q15784 382 aa16.44■□□□□ 0.22
LDB3-205ENST00000429277 BAZ1AQ9NRL2 1556 aaPredicted RBP16.43■□□□□ 0.22
LDB3-205ENST00000429277 DNTTIP2Q5QJE6 756 aaKnown RBP16.43■□□□□ 0.22
LDB3-205ENST00000429277 FGD1P98174 961 aa16.42■□□□□ 0.22
LDB3-205ENST00000429277 NPHP1O15259 732 aa16.41■□□□□ 0.22
LDB3-205ENST00000429277 FRAT1Q92837 279 aaPredicted RBP16.41■□□□□ 0.22
LDB3-205ENST00000429277 LMOD2Q6P5Q4 547 aa16.4■□□□□ 0.22
LDB3-205ENST00000429277 SENP3Q9H4L4 574 aaPredicted RBP16.4■□□□□ 0.22
LDB3-205ENST00000429277 U2SURPO15042 1029 aaKnown RBP16.4■□□□□ 0.22
LDB3-205ENST00000429277 HSP90AB1P08238 724 aaKnown RBP16.4■□□□□ 0.22
LDB3-205ENST00000429277 KCNJ4P48050 445 aa16.4■□□□□ 0.22
LDB3-205ENST00000429277 MCCP23508 829 aa16.39■□□□□ 0.21
LDB3-205ENST00000429277 CHMP4AQ9BY43 222 aa16.39■□□□□ 0.21
LDB3-205ENST00000429277 GOLGA2Q08379 1002 aa16.38■□□□□ 0.21
LDB3-205ENST00000429277 CCER2I3L3R5 266 aa16.36■□□□□ 0.21
LDB3-205ENST00000429277 RGS3P49796 1198 aa16.36■□□□□ 0.21
LDB3-205ENST00000429277 CARMIL1Q5VZK9 1371 aa16.36■□□□□ 0.21
LDB3-205ENST00000429277 CALD1Q05682 793 aaKnown RBP16.35■□□□□ 0.21
LDB3-205ENST00000429277 CC2D1BQ5T0F9 858 aaKnown RBP16.35■□□□□ 0.21
LDB3-205ENST00000429277 HSCBQ8IWL3 235 aa16.35■□□□□ 0.21
LDB3-205ENST00000429277 GOLGA6L4A6NEF3 574 aa16.34■□□□□ 0.21
LDB3-205ENST00000429277 DCAF11Q8TEB1 546 aa16.34■□□□□ 0.21
LDB3-205ENST00000429277 MORC1Q86VD1 984 aa16.33■□□□□ 0.2
LDB3-205ENST00000429277 NOP58Q9Y2X3 529 aaKnown RBP16.32■□□□□ 0.2
LDB3-205ENST00000429277 IPO8O15397 1037 aaKnown RBP16.32■□□□□ 0.2
LDB3-205ENST00000429277 SIN3AQ96ST3 1273 aa16.32■□□□□ 0.2
LDB3-205ENST00000429277 SRPK2P78362 688 aaKnown RBP16.32■□□□□ 0.2
LDB3-205ENST00000429277 CARMIL2Q6F5E8 1435 aa16.31■□□□□ 0.2
LDB3-205ENST00000429277 HDGFL2Q7Z4V5 671 aaPredicted RBP16.31■□□□□ 0.2
LDB3-205ENST00000429277 L1TD1Q5T7N2 865 aaKnown RBP16.31■□□□□ 0.2
LDB3-205ENST00000429277 RTF1Q92541 710 aaKnown RBP16.31■□□□□ 0.2
LDB3-205ENST00000429277 PTMSP20962 102 aa16.3■□□□□ 0.2
LDB3-205ENST00000429277 CUX2O14529 1486 aa16.29■□□□□ 0.2
LDB3-205ENST00000429277 ARHGAP35Q9NRY4 1499 aa16.29■□□□□ 0.2
LDB3-205ENST00000429277 SETD5Q9C0A6 1442 aa16.29■□□□□ 0.2
LDB3-205ENST00000429277 KTN1Q86UP2 1357 aaKnown RBP16.29■□□□□ 0.2
LDB3-205ENST00000429277 CHAF1AQ13111 956 aaPredicted RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms