RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 GIGYF1O75420 1035 aaPredicted RBP4.27□□□□□ -1.73
CCDC88A-205ENST00000426576 SLC24A1O60721 1099 aa4.27□□□□□ -1.73
CCDC88A-205ENST00000426576 GRM1Q13255 1194 aa4.27□□□□□ -1.73
CCDC88A-205ENST00000426576 ZBTB7CA1YPR0 619 aa4.27□□□□□ -1.73
CCDC88A-205ENST00000426576 APLP2Q06481 763 aa4.27□□□□□ -1.73
CCDC88A-205ENST00000426576 CSRNP3Q8WYN3 585 aa4.27□□□□□ -1.73
CCDC88A-205ENST00000426576 RNF216Q9NWF9 866 aaPredicted RBP4.26□□□□□ -1.73
CCDC88A-205ENST00000426576 CHGAP10645 457 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-205ENST00000426576 NPM3O75607 178 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-205ENST00000426576 BAG6P46379 1132 aa4.25□□□□□ -1.73
CCDC88A-205ENST00000426576 TMX4Q9H1E5 349 aaPredicted RBP4.25□□□□□ -1.73
CCDC88A-205ENST00000426576 RNF39Q9H2S5 420 aa4.24□□□□□ -1.73
CCDC88A-205ENST00000426576 ZNF219Q9P2Y4 722 aaPredicted RBP4.23□□□□□ -1.73
CCDC88A-205ENST00000426576 SLC4A2P04920 1241 aa4.23□□□□□ -1.73
CCDC88A-205ENST00000426576 EIF4E1BA6NMX2 242 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-205ENST00000426576 ZNF526Q8TF50 670 aaPredicted RBP4.21□□□□□ -1.74
CCDC88A-205ENST00000426576 CCDC85CA6NKD9 419 aa4.2□□□□□ -1.74
CCDC88A-205ENST00000426576 CNKSR2Q8WXI2 1034 aa4.2□□□□□ -1.74
CCDC88A-205ENST00000426576 WDHD1O75717 1129 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-205ENST00000426576 RXRBP28702 533 aa4.2□□□□□ -1.74
CCDC88A-205ENST00000426576 HSPA2P54652 639 aa4.2□□□□□ -1.74
CCDC88A-205ENST00000426576 ZNF772Q68DY9 489 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-205ENST00000426576 POLD1P28340 1107 aa4.19□□□□□ -1.74
CCDC88A-205ENST00000426576 GPBP1L1Q9HC44 474 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-205ENST00000426576 HDGFP51858 240 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-205ENST00000426576 EID1Q9Y6B2 187 aa4.18□□□□□ -1.74
CCDC88A-205ENST00000426576 ARXQ96QS3 562 aa4.18□□□□□ -1.74
CCDC88A-205ENST00000426576 KCNA4P22459 653 aa4.17□□□□□ -1.74
CCDC88A-205ENST00000426576 HNRNPMP52272 730 aaKnown RBP eCLIP4.17□□□□□ -1.74
CCDC88A-205ENST00000426576 ZNF710Q8N1W2 664 aa4.17□□□□□ -1.74
CCDC88A-205ENST00000426576 ATF3P18847 181 aa4.17□□□□□ -1.74
CCDC88A-205ENST00000426576 BCL11BQ9C0K0 894 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-205ENST00000426576 IFFO2Q5TF58 517 aa4.16□□□□□ -1.74
CCDC88A-205ENST00000426576 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.16□□□□□ -1.74
CCDC88A-205ENST00000426576 WWC3Q9ULE0 1092 aa4.14□□□□□ -1.75
CCDC88A-205ENST00000426576 CLEC11AQ9Y240 323 aa4.14□□□□□ -1.75
CCDC88A-205ENST00000426576 ZBTB22O15209 634 aa4.14□□□□□ -1.75
CCDC88A-205ENST00000426576 PROM2Q8N271 834 aa4.14□□□□□ -1.75
CCDC88A-205ENST00000426576 HMGB2P26583 209 aaKnown RBP4.14□□□□□ -1.75
CCDC88A-205ENST00000426576 CDK11AQ9UQ88 783 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-205ENST00000426576 ATRXP46100 2492 aa4.14□□□□□ -1.75
CCDC88A-205ENST00000426576 RFX1P22670 979 aa4.13□□□□□ -1.75
CCDC88A-205ENST00000426576 PDE3BQ13370 1112 aa4.13□□□□□ -1.75
CCDC88A-205ENST00000426576 SLC17A8Q8NDX2 589 aa4.13□□□□□ -1.75
CCDC88A-205ENST00000426576 EVA1CP58658 441 aa4.13□□□□□ -1.75
CCDC88A-205ENST00000426576 ZNF777Q9ULD5 760 aaPredicted RBP4.13□□□□□ -1.75
CCDC88A-205ENST00000426576 POGZQ7Z3K3 1410 aa4.12□□□□□ -1.75
CCDC88A-205ENST00000426576 FAM83GA6ND36 823 aa4.12□□□□□ -1.75
CCDC88A-205ENST00000426576 GCC1Q96CN9 775 aa4.12□□□□□ -1.75
CCDC88A-205ENST00000426576 PCDH10Q9P2E7 1040 aa4.12□□□□□ -1.75
CCDC88A-205ENST00000426576 ADAMTS2O95450 1211 aa4.11□□□□□ -1.75
CCDC88A-205ENST00000426576 PDS5BQ9NTI5 1447 aa4.11□□□□□ -1.75
CCDC88A-205ENST00000426576 FKBP8Q14318 412 aa4.11□□□□□ -1.75
CCDC88A-205ENST00000426576 PROSER2Q86WR7 435 aaPredicted RBP4.11□□□□□ -1.75
CCDC88A-205ENST00000426576 C8orf37Q96NL8 207 aa4.11□□□□□ -1.75
CCDC88A-205ENST00000426576 HDAC9Q9UKV0 1011 aa4.11□□□□□ -1.75
CCDC88A-205ENST00000426576 PLEKHD1A6NEE1 506 aa4.1□□□□□ -1.75
CCDC88A-205ENST00000426576 CWC22Q9HCG8 908 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-205ENST00000426576 G3V3G9 751 aa4.1□□□□□ -1.75
CCDC88A-205ENST00000426576 MLLT1Q03111 559 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-205ENST00000426576 DCAF8Q5TAQ9 597 aa4.1□□□□□ -1.75
CCDC88A-205ENST00000426576 ILDR2Q71H61 639 aa4.1□□□□□ -1.75
CCDC88A-205ENST00000426576 CSB-PGBD3P0DP91 1061 aa4.09□□□□□ -1.75
CCDC88A-205ENST00000426576 NBPF15Q8N660 670 aa4.09□□□□□ -1.75
CCDC88A-205ENST00000426576 SPON1Q9HCB6 807 aa4.09□□□□□ -1.75
CCDC88A-205ENST00000426576 ATF5Q9Y2D1 282 aaPredicted RBP4.09□□□□□ -1.75
CCDC88A-205ENST00000426576 WDR70Q9NW82 654 aa4.09□□□□□ -1.76
CCDC88A-205ENST00000426576 PSDA5PKW4 1024 aaPredicted RBP4.08□□□□□ -1.76
CCDC88A-205ENST00000426576 PMFBP1Q8TBY8 1022 aa4.08□□□□□ -1.76
CCDC88A-205ENST00000426576 PTPRZ1P23471 2315 aaPredicted RBP4.08□□□□□ -1.76
CCDC88A-205ENST00000426576 CSPP1Q1MSJ5 1256 aa4.08□□□□□ -1.76
CCDC88A-205ENST00000426576 U3KPZ7 1027 aaPredicted RBP4.07□□□□□ -1.76
CCDC88A-205ENST00000426576 HCN4Q9Y3Q4 1203 aa4.07□□□□□ -1.76
CCDC88A-205ENST00000426576 UIMC1Q96RL1 719 aa4.06□□□□□ -1.76
CCDC88A-205ENST00000426576 NUTM2FA1L443 756 aa4.05□□□□□ -1.76
CCDC88A-205ENST00000426576 STK32BQ9NY57 414 aa4.05□□□□□ -1.76
CCDC88A-205ENST00000426576 WASHC2AQ641Q2 1341 aa4.05□□□□□ -1.76
CCDC88A-205ENST00000426576 GRIN3BO60391 1043 aa4.05□□□□□ -1.76
CCDC88A-205ENST00000426576 BIN2Q9UBW5 565 aaPredicted RBP4.05□□□□□ -1.76
CCDC88A-205ENST00000426576 SYNJ2O15056 1496 aa4.05□□□□□ -1.76
CCDC88A-205ENST00000426576 C1QTNF8P60827 252 aa4.05□□□□□ -1.76
CCDC88A-205ENST00000426576 SKIV2LQ15477 1246 aaKnown RBP4.05□□□□□ -1.76
CCDC88A-205ENST00000426576 GGT6Q6P531 493 aa4.05□□□□□ -1.76
CCDC88A-205ENST00000426576 ANKLE2Q86XL3 938 aa4.05□□□□□ -1.76
CCDC88A-205ENST00000426576 CCAR1Q8IX12 1150 aaKnown RBP4.03□□□□□ -1.76
CCDC88A-205ENST00000426576 CHAMP1Q96JM3 812 aa4.03□□□□□ -1.76
CCDC88A-205ENST00000426576 GOLGA2Q08379 1002 aa4.03□□□□□ -1.76
CCDC88A-205ENST00000426576 ARID3AQ99856 593 aa4.03□□□□□ -1.76
CCDC88A-205ENST00000426576 CUX2O14529 1486 aa4.03□□□□□ -1.76
CCDC88A-205ENST00000426576 ARHGEF6Q15052 776 aa4.03□□□□□ -1.76
CCDC88A-205ENST00000426576 RB1CC1Q8TDY2 1594 aa4.02□□□□□ -1.77
CCDC88A-205ENST00000426576 TMEM106CQ9BVX2 250 aa4.02□□□□□ -1.77
CCDC88A-205ENST00000426576 QTRT2Q9H974 415 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-205ENST00000426576 ABT1Q9ULW3 272 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-205ENST00000426576 KIF7Q2M1P5 1343 aa4.02□□□□□ -1.77
CCDC88A-205ENST00000426576 ZNF326Q5BKZ1 582 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-205ENST00000426576 HINFPQ9BQA5 517 aa4.02□□□□□ -1.77
CCDC88A-205ENST00000426576 TSPYL2Q9H2G4 693 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-205ENST00000426576 TAOK2Q9UL54 1235 aa4.02□□□□□ -1.77
CCDC88A-205ENST00000426576 HSPA1LP34931 641 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms