RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.17□□□□□ -0.94
VPS13A-207ENST00000419472 TRIM26Q12899 539 aaPredicted RBP9.16□□□□□ -0.94
VPS13A-207ENST00000419472 ZNF692Q9BU19 519 aaPredicted RBP9.15□□□□□ -0.95
VPS13A-207ENST00000419472 KCNV2Q8TDN2 545 aa9.12□□□□□ -0.95
VPS13A-207ENST00000419472 NEUROD2Q15784 382 aa9.12□□□□□ -0.95
VPS13A-207ENST00000419472 STK25O00506 426 aa9.11□□□□□ -0.95
VPS13A-207ENST00000419472 ABCB7O75027 752 aa9.1□□□□□ -0.95
VPS13A-207ENST00000419472 PABPN1Q86U42 306 aaKnown RBP eCLIP9.09□□□□□ -0.95
VPS13A-207ENST00000419472 CAPN15O75808 1086 aa9.08□□□□□ -0.96
VPS13A-207ENST00000419472 TRIM41Q8WV44 630 aa9.08□□□□□ -0.96
VPS13A-207ENST00000419472 HRCP23327 699 aa9.07□□□□□ -0.96
VPS13A-207ENST00000419472 P3H3Q8IVL6 736 aa9.07□□□□□ -0.96
VPS13A-207ENST00000419472 RIOK3O14730 519 aaKnown RBP9.07□□□□□ -0.96
VPS13A-207ENST00000419472 SLC24A3Q9HC58 644 aa9.06□□□□□ -0.96
VPS13A-207ENST00000419472 OSCARQ8IYS5 282 aa9.04□□□□□ -0.96
VPS13A-207ENST00000419472 ZC3H15Q8WU90 426 aaKnown RBP9.04□□□□□ -0.96
VPS13A-207ENST00000419472 CADPS2Q86UW7 1296 aa9.03□□□□□ -0.96
VPS13A-207ENST00000419472 SSUH2Q9Y2M2 353 aa9.03□□□□□ -0.96
VPS13A-207ENST00000419472 NPM2Q86SE8 214 aaKnown RBP9.03□□□□□ -0.96
VPS13A-207ENST00000419472 ZBTB47Q9UFB7 747 aaPredicted RBP9.02□□□□□ -0.96
VPS13A-207ENST00000419472 ZBTB12Q9Y330 459 aaPredicted RBP9.01□□□□□ -0.97
VPS13A-207ENST00000419472 PLEKHG5O94827 1062 aa8.99□□□□□ -0.97
VPS13A-207ENST00000419472 BCL11BQ9C0K0 894 aaPredicted RBP8.99□□□□□ -0.97
VPS13A-207ENST00000419472 STK24Q9Y6E0 443 aa8.99□□□□□ -0.97
VPS13A-207ENST00000419472 ARID3AQ99856 593 aa8.98□□□□□ -0.97
VPS13A-207ENST00000419472 GSE1Q14687 1217 aa8.97□□□□□ -0.97
VPS13A-207ENST00000419472 NUBP1P53384 320 aa8.96□□□□□ -0.98
VPS13A-207ENST00000419472 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.95□□□□□ -0.98
VPS13A-207ENST00000419472 ZFP91Q96JP5 570 aaPredicted RBP8.95□□□□□ -0.98
VPS13A-207ENST00000419472 SPDYE2BA6NHP3 402 aa8.95□□□□□ -0.98
VPS13A-207ENST00000419472 VGFO15240 615 aaPredicted RBP8.95□□□□□ -0.98
VPS13A-207ENST00000419472 SPDYE6P0CI01 402 aa8.95□□□□□ -0.98
VPS13A-207ENST00000419472 SPDYE2Q495Y8 402 aa8.95□□□□□ -0.98
VPS13A-207ENST00000419472 DCAF8Q5TAQ9 597 aa8.95□□□□□ -0.98
VPS13A-207ENST00000419472 WDR70Q9NW82 654 aa8.94□□□□□ -0.98
VPS13A-207ENST00000419472 C1orf115Q9H7X2 142 aa8.92□□□□□ -0.98
VPS13A-207ENST00000419472 SEMA3EO15041 775 aa8.91□□□□□ -0.98
VPS13A-207ENST00000419472 ZMYND15Q9H091 742 aa8.91□□□□□ -0.98
VPS13A-207ENST00000419472 GPBP1L1Q9HC44 474 aaPredicted RBP8.9□□□□□ -0.99
VPS13A-207ENST00000419472 RSPH6AQ9H0K4 717 aa8.87□□□□□ -0.99
VPS13A-207ENST00000419472 RYDENQ9NUL5 291 aaKnown RBP8.86□□□□□ -0.99
VPS13A-207ENST00000419472 IL27Q8NEV9 243 aa8.85□□□□□ -0.99
VPS13A-207ENST00000419472 ARID3CA6NKF2 412 aa8.84□□□□□ -0.99
VPS13A-207ENST00000419472 ZMYND10O75800 440 aa8.84□□□□□ -0.99
VPS13A-207ENST00000419472 TESPA1A2RU30 521 aaPredicted RBP8.83□□□□□ -1
VPS13A-207ENST00000419472 POTEDQ86YR6 584 aa8.83□□□□□ -1
VPS13A-207ENST00000419472 SGIP1Q9BQI5 828 aa8.81□□□□□ -1
VPS13A-207ENST00000419472 PYGBP11216 843 aa8.8□□□□□ -1
VPS13A-207ENST00000419472 ARHGEF1Q92888 912 aaKnown RBP8.8□□□□□ -1
VPS13A-207ENST00000419472 FAM212AQ96EL1 285 aa8.79□□□□□ -1
VPS13A-207ENST00000419472 RNF39Q9H2S5 420 aa8.78□□□□□ -1
VPS13A-207ENST00000419472 RASEFQ8IZ41 740 aa8.78□□□□□ -1
VPS13A-207ENST00000419472 MKRN3Q13064 507 aaKnown RBP8.76□□□□□ -1.01
VPS13A-207ENST00000419472 CHRM1P11229 460 aaPredicted RBP8.75□□□□□ -1.01
VPS13A-207ENST00000419472 E2F4Q16254 413 aa8.75□□□□□ -1.01
VPS13A-207ENST00000419472 NECTIN2Q92692 538 aa8.75□□□□□ -1.01
VPS13A-207ENST00000419472 APBB1O00213 710 aa8.74□□□□□ -1.01
VPS13A-207ENST00000419472 BARGINQ6ZT62 677 aa8.73□□□□□ -1.01
VPS13A-207ENST00000419472 KDM4CQ9H3R0 1056 aa8.73□□□□□ -1.01
VPS13A-207ENST00000419472 DSG3P32926 999 aa8.72□□□□□ -1.01
VPS13A-207ENST00000419472 MNX1P50219 401 aaPredicted RBP8.72□□□□□ -1.01
VPS13A-207ENST00000419472 PPP1R37O75864 691 aa8.71□□□□□ -1.02
VPS13A-207ENST00000419472 MFRPQ9BY79 579 aa8.7□□□□□ -1.02
VPS13A-207ENST00000419472 AK7Q96M32 723 aa8.68□□□□□ -1.02
VPS13A-207ENST00000419472 PDIA4P13667 645 aaKnown RBP8.67□□□□□ -1.02
VPS13A-207ENST00000419472 RBM26Q5T8P6 1007 aaKnown RBP8.67□□□□□ -1.02
VPS13A-207ENST00000419472 CCDC9Q9Y3X0 531 aaKnown RBP8.67□□□□□ -1.02
VPS13A-207ENST00000419472 ZBTB7CA1YPR0 619 aa8.66□□□□□ -1.02
VPS13A-207ENST00000419472 CREBZFQ9NS37 354 aa8.65□□□□□ -1.02
VPS13A-207ENST00000419472 FAM117AQ9C073 453 aa8.64□□□□□ -1.03
VPS13A-207ENST00000419472 KRI1Q8N9T8 703 aaKnown RBP8.64□□□□□ -1.03
VPS13A-207ENST00000419472 C1QBPQ07021 282 aaKnown RBP8.63□□□□□ -1.03
VPS13A-207ENST00000419472 PDE4DQ08499 809 aa8.63□□□□□ -1.03
VPS13A-207ENST00000419472 CCDC82Q8N4S0 544 aa8.62□□□□□ -1.03
VPS13A-207ENST00000419472 TRIM66O15016 1216 aa8.62□□□□□ -1.03
VPS13A-207ENST00000419472 NCKAP5LQ9HCH0 1330 aa8.61□□□□□ -1.03
VPS13A-207ENST00000419472 MLLT3P42568 568 aaPredicted RBP8.61□□□□□ -1.03
VPS13A-207ENST00000419472 SMYD5Q6GMV2 418 aa8.6□□□□□ -1.03
VPS13A-207ENST00000419472 GPIHBP1Q8IV16 184 aa8.6□□□□□ -1.03
VPS13A-207ENST00000419472 ZNF316A6NFI3 1004 aaPredicted RBP8.59□□□□□ -1.03
VPS13A-207ENST00000419472 CLUAP1Q96AJ1 413 aa8.58□□□□□ -1.04
VPS13A-207ENST00000419472 LARP6Q9BRS8 491 aaKnown RBP8.57□□□□□ -1.04
VPS13A-207ENST00000419472 PCDHB8Q9UN66 801 aa8.57□□□□□ -1.04
VPS13A-207ENST00000419472 PCDHB13Q9Y5F0 798 aa8.57□□□□□ -1.04
VPS13A-207ENST00000419472 PLEKHG3A1L390 1219 aa8.57□□□□□ -1.04
VPS13A-207ENST00000419472 LOC105371045A0A1W2PR82 267 aa8.54□□□□□ -1.04
VPS13A-207ENST00000419472 PDAP1Q13442 181 aaKnown RBP8.54□□□□□ -1.04
VPS13A-207ENST00000419472 FBXO22Q8NEZ5 403 aa8.53□□□□□ -1.04
VPS13A-207ENST00000419472 CLEC11AQ9Y240 323 aa8.53□□□□□ -1.04
VPS13A-207ENST00000419472 CCDC180Q9P1Z9 1646 aa8.53□□□□□ -1.04
VPS13A-207ENST00000419472 ONECUT3O60422 494 aaPredicted RBP8.53□□□□□ -1.04
VPS13A-207ENST00000419472 KCTD17Q8N5Z5 321 aa8.53□□□□□ -1.04
VPS13A-207ENST00000419472 ZNF467Q7Z7K2 595 aaPredicted RBP8.51□□□□□ -1.05
VPS13A-207ENST00000419472 PHF8Q9UPP1 1060 aa8.51□□□□□ -1.05
VPS13A-207ENST00000419472 PRR29P0C7W0 189 aa8.5□□□□□ -1.05
VPS13A-207ENST00000419472 EFCAB3Q8N7B9 438 aa8.5□□□□□ -1.05
VPS13A-207ENST00000419472 TRAK2O60296 914 aa8.49□□□□□ -1.05
VPS13A-207ENST00000419472 PSEN1P49768 467 aa8.48□□□□□ -1.05
VPS13A-207ENST00000419472 FLIIQ13045 1269 aa8.48□□□□□ -1.05
VPS13A-207ENST00000419472 TSPYL2Q9H2G4 693 aaPredicted RBP8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 127.2 ms