RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 NAP1L5Q96NT1 182 aaPredicted RBP16■□□□□ 0.15
UBR4-205ENST00000417040 BECN1Q14457 450 aa15.94■□□□□ 0.14
UBR4-205ENST00000417040 NOP58Q9Y2X3 529 aaKnown RBP15.94■□□□□ 0.14
UBR4-205ENST00000417040 STAG3Q9UJ98 1225 aa15.92■□□□□ 0.14
UBR4-205ENST00000417040 RRP7BPQ9NSQ0 103 aa15.9■□□□□ 0.14
UBR4-205ENST00000417040 DEKP35659 375 aaKnown RBP15.9■□□□□ 0.14
UBR4-205ENST00000417040 B4GALNT3Q6L9W6 998 aa15.9■□□□□ 0.14
UBR4-205ENST00000417040 SCRIBQ14160 1630 aa15.89■□□□□ 0.13
UBR4-205ENST00000417040 DNTTIP2Q5QJE6 756 aaKnown RBP15.89■□□□□ 0.13
UBR4-205ENST00000417040 EIF4G2P78344 907 aaKnown RBP eCLIP15.88■□□□□ 0.13
UBR4-205ENST00000417040 PTMAP06454 111 aaKnown RBP15.88■□□□□ 0.13
UBR4-205ENST00000417040 MYH16Q9H6N6 1097 aa15.86■□□□□ 0.13
UBR4-205ENST00000417040 PLEKHG5O94827 1062 aa15.86■□□□□ 0.13
UBR4-205ENST00000417040 ARID4BQ4LE39 1312 aaPredicted RBP15.86■□□□□ 0.13
UBR4-205ENST00000417040 RGS3P49796 1198 aa15.86■□□□□ 0.13
UBR4-205ENST00000417040 AMER1Q5JTC6 1135 aaPredicted RBP15.85■□□□□ 0.13
UBR4-205ENST00000417040 CCDC180Q9P1Z9 1646 aa15.85■□□□□ 0.13
UBR4-205ENST00000417040 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.84■□□□□ 0.13
UBR4-205ENST00000417040 PPM1GO15355 546 aaPredicted RBP15.82■□□□□ 0.12
UBR4-205ENST00000417040 PPP4R2Q9NY27 417 aa15.82■□□□□ 0.12
UBR4-205ENST00000417040 SPRYD3Q8NCJ5 442 aa15.81■□□□□ 0.12
UBR4-205ENST00000417040 GOLGA6L22H0YM25 854 aa15.81■□□□□ 0.12
UBR4-205ENST00000417040 TNNT2P45379 298 aaPredicted RBP15.8■□□□□ 0.12
UBR4-205ENST00000417040 RBM19Q9Y4C8 960 aaKnown RBP15.8■□□□□ 0.12
UBR4-205ENST00000417040 ZBTB7CA1YPR0 619 aa15.8■□□□□ 0.12
UBR4-205ENST00000417040 ERICH6BQ5W0A0 696 aa15.8■□□□□ 0.12
UBR4-205ENST00000417040 SIN3AQ96ST3 1273 aa15.79■□□□□ 0.12
UBR4-205ENST00000417040 PLCB2Q00722 1185 aa15.78■□□□□ 0.12
UBR4-205ENST00000417040 NEUROD2Q15784 382 aa15.78■□□□□ 0.12
UBR4-205ENST00000417040 RGL3Q3MIN7 710 aa15.76■□□□□ 0.11
UBR4-205ENST00000417040 TAOK2Q9UL54 1235 aa15.76■□□□□ 0.11
UBR4-205ENST00000417040 CLIP1P30622 1438 aa15.76■□□□□ 0.11
UBR4-205ENST00000417040 ESF1Q9H501 851 aaKnown RBP15.75■□□□□ 0.11
UBR4-205ENST00000417040 MTUS2Q5JR59 1369 aa15.74■□□□□ 0.11
UBR4-205ENST00000417040 ARID3AQ99856 593 aa15.73■□□□□ 0.11
UBR4-205ENST00000417040 FRAT1Q92837 279 aaPredicted RBP15.73■□□□□ 0.11
UBR4-205ENST00000417040 CEP162Q5TB80 1403 aa15.71■□□□□ 0.11
UBR4-205ENST00000417040 FTSJ3Q8IY81 847 aaKnown RBP15.71■□□□□ 0.11
UBR4-205ENST00000417040 CC2D1BQ5T0F9 858 aaKnown RBP15.7■□□□□ 0.1
UBR4-205ENST00000417040 A0A0G2JS52 829 aa15.68■□□□□ 0.1
UBR4-205ENST00000417040 HSP90AB1P08238 724 aaKnown RBP15.68■□□□□ 0.1
UBR4-205ENST00000417040 CDK11BP21127 795 aaKnown RBP15.67■□□□□ 0.1
UBR4-205ENST00000417040 TULP1O00294 542 aaPredicted RBP15.66■□□□□ 0.1
UBR4-205ENST00000417040 TSPY4P0CV99 314 aa15.66■□□□□ 0.1
UBR4-205ENST00000417040 TSPY10P0CW01 314 aa15.66■□□□□ 0.1
UBR4-205ENST00000417040 C14orf37Q86TY3 774 aa15.64■□□□□ 0.09
UBR4-205ENST00000417040 ZCCHC6Q5VYS8 1495 aaKnown RBP15.64■□□□□ 0.09
UBR4-205ENST00000417040 CASC1Q6TDU7 716 aa15.63■□□□□ 0.09
UBR4-205ENST00000417040 CARD11Q9BXL7 1154 aa15.63■□□□□ 0.09
UBR4-205ENST00000417040 TSHZ2Q9NRE2 1034 aa15.63■□□□□ 0.09
UBR4-205ENST00000417040 ZRSR1Q15695 479 aaKnown RBP15.62■□□□□ 0.09
UBR4-205ENST00000417040 KNSTRNQ9Y448 316 aa15.62■□□□□ 0.09
UBR4-205ENST00000417040 GZF1Q9H116 711 aaPredicted RBP15.6■□□□□ 0.09
UBR4-205ENST00000417040 MSNP26038 577 aaKnown RBP15.57■□□□□ 0.08
UBR4-205ENST00000417040 GOLGA3Q08378 1498 aa15.56■□□□□ 0.08
UBR4-205ENST00000417040 HSCBQ8IWL3 235 aa15.54■□□□□ 0.08
UBR4-205ENST00000417040 CFAP53Q96M91 514 aa15.54■□□□□ 0.08
UBR4-205ENST00000417040 KCNH8Q96L42 1107 aa15.54■□□□□ 0.08
UBR4-205ENST00000417040 L1TD1Q5T7N2 865 aaKnown RBP15.53■□□□□ 0.08
UBR4-205ENST00000417040 NAP1L2Q9ULW6 460 aaPredicted RBP15.51■□□□□ 0.07
UBR4-205ENST00000417040 SLKQ9H2G2 1235 aaPredicted RBP15.51■□□□□ 0.07
UBR4-205ENST00000417040 MAPK8IP3Q9UPT6 1336 aa15.49■□□□□ 0.07
UBR4-205ENST00000417040 DRC7Q8IY82 874 aa15.48■□□□□ 0.07
UBR4-205ENST00000417040 U2SURPO15042 1029 aaKnown RBP15.48■□□□□ 0.07
UBR4-205ENST00000417040 NPM1P06748 294 aaKnown RBP eCLIP15.46■□□□□ 0.07
UBR4-205ENST00000417040 PPP1R15AO75807 674 aaPredicted RBP15.45■□□□□ 0.06
UBR4-205ENST00000417040 HSPA5P11021 654 aaKnown RBP15.44■□□□□ 0.06
UBR4-205ENST00000417040 CHAF1AQ13111 956 aaPredicted RBP15.44■□□□□ 0.06
UBR4-205ENST00000417040 APBB1O00213 710 aa15.44■□□□□ 0.06
UBR4-205ENST00000417040 OS9Q13438 667 aaPredicted RBP15.44■□□□□ 0.06
UBR4-205ENST00000417040 GOLGA6L6A8MZA4 724 aa15.43■□□□□ 0.06
UBR4-205ENST00000417040 KCNJ4P48050 445 aa15.42■□□□□ 0.06
UBR4-205ENST00000417040 FGD1P98174 961 aa15.42■□□□□ 0.06
UBR4-205ENST00000417040 RSF1Q96T23 1441 aaPredicted RBP15.42■□□□□ 0.06
UBR4-205ENST00000417040 FOXD1Q16676 465 aa15.41■□□□□ 0.06
UBR4-205ENST00000417040 FOXD4L1Q9NU39 408 aa15.41■□□□□ 0.06
UBR4-205ENST00000417040 CHMP7Q8WUX9 453 aaPredicted RBP15.4■□□□□ 0.06
UBR4-205ENST00000417040 CCER2I3L3R5 266 aa15.4■□□□□ 0.06
UBR4-205ENST00000417040 TNIKQ9UKE5 1360 aa15.39■□□□□ 0.05
UBR4-205ENST00000417040 GOLGA6L4A6NEF3 574 aa15.39■□□□□ 0.05
UBR4-205ENST00000417040 CDCA8Q53HL2 280 aa15.39■□□□□ 0.05
UBR4-205ENST00000417040 DCAF11Q8TEB1 546 aa15.39■□□□□ 0.05
UBR4-205ENST00000417040 IPO9Q96P70 1041 aaKnown RBP15.38■□□□□ 0.05
UBR4-205ENST00000417040 CFDP1Q9UEE9 299 aaPredicted RBP15.38■□□□□ 0.05
UBR4-205ENST00000417040 PNNQ9H307 717 aaKnown RBP15.38■□□□□ 0.05
UBR4-205ENST00000417040 NUDCQ9Y266 331 aa15.37■□□□□ 0.05
UBR4-205ENST00000417040 SLC4A3P48751 1232 aa15.36■□□□□ 0.05
UBR4-205ENST00000417040 RCAN3Q9UKA8 241 aa15.36■□□□□ 0.05
UBR4-205ENST00000417040 SOX12O15370 315 aa15.35■□□□□ 0.05
UBR4-205ENST00000417040 MFAP1P55081 439 aaKnown RBP15.35■□□□□ 0.05
UBR4-205ENST00000417040 GOLGA6L3A6NEY3 463 aa15.34■□□□□ 0.05
UBR4-205ENST00000417040 PLEKHD1A6NEE1 506 aa15.33■□□□□ 0.04
UBR4-205ENST00000417040 CCNB3Q8WWL7 1395 aa15.32■□□□□ 0.04
UBR4-205ENST00000417040 POGKQ9P215 609 aa15.31■□□□□ 0.04
UBR4-205ENST00000417040 SAFB2Q14151 953 aaKnown RBP eCLIP15.31■□□□□ 0.04
UBR4-205ENST00000417040 TMF1P82094 1093 aa15.3■□□□□ 0.04
UBR4-205ENST00000417040 GBP4Q96PP9 640 aa15.3■□□□□ 0.04
UBR4-205ENST00000417040 BAZ1BQ9UIG0 1483 aaKnown RBP15.3■□□□□ 0.04
UBR4-205ENST00000417040 CEP164Q9UPV0 1460 aa15.29■□□□□ 0.04
UBR4-205ENST00000417040 TCERG1O14776 1098 aaKnown RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms