RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 EIF5BO60841 1220 aaKnown RBP10.17□□□□□ -0.78
SCN9A-202ENST00000409435 WRNQ14191 1432 aaPredicted RBP eCLIP10.17□□□□□ -0.78
SCN9A-202ENST00000409435 KIF27Q86VH2 1401 aa10.16□□□□□ -0.78
SCN9A-202ENST00000409435 CFDP1Q9UEE9 299 aaPredicted RBP10.14□□□□□ -0.79
SCN9A-202ENST00000409435 TDRD9Q8NDG6 1382 aaKnown RBP10.14□□□□□ -0.79
SCN9A-202ENST00000409435 EID1Q9Y6B2 187 aa10.13□□□□□ -0.79
SCN9A-202ENST00000409435 NEUROD1Q13562 356 aa10.12□□□□□ -0.79
SCN9A-202ENST00000409435 GGT6Q6P531 493 aa10.12□□□□□ -0.79
SCN9A-202ENST00000409435 NPHP1O15259 732 aa10.11□□□□□ -0.79
SCN9A-202ENST00000409435 CHIC2Q9UKJ5 165 aa10.11□□□□□ -0.79
SCN9A-202ENST00000409435 KANK1Q14678 1352 aa10.1□□□□□ -0.79
SCN9A-202ENST00000409435 CLIP1P30622 1438 aa10.08□□□□□ -0.8
SCN9A-202ENST00000409435 RSF1Q96T23 1441 aaPredicted RBP10.08□□□□□ -0.8
SCN9A-202ENST00000409435 CUX2O14529 1486 aa10.08□□□□□ -0.8
SCN9A-202ENST00000409435 JPH4Q96JJ6 628 aa10.07□□□□□ -0.8
SCN9A-202ENST00000409435 EFCAB2Q5VUJ9 269 aa10.07□□□□□ -0.8
SCN9A-202ENST00000409435 ABCC8Q09428 1581 aa10.06□□□□□ -0.8
SCN9A-202ENST00000409435 LOC105371045A0A1W2PR82 267 aa10.06□□□□□ -0.8
SCN9A-202ENST00000409435 DCAF1Q9Y4B6 1507 aa10.06□□□□□ -0.8
SCN9A-202ENST00000409435 FANCD2Q9BXW9 1451 aa10.05□□□□□ -0.8
SCN9A-202ENST00000409435 ZBTB47Q9UFB7 747 aaPredicted RBP10.05□□□□□ -0.8
SCN9A-202ENST00000409435 CC2D2AQ9P2K1 1620 aa10.04□□□□□ -0.8
SCN9A-202ENST00000409435 POGKQ9P215 609 aa10.04□□□□□ -0.8
SCN9A-202ENST00000409435 ARXQ96QS3 562 aa10.03□□□□□ -0.8
SCN9A-202ENST00000409435 SF3B2Q13435 895 aaKnown RBP10.01□□□□□ -0.81
SCN9A-202ENST00000409435 CARMIL1Q5VZK9 1371 aa10.01□□□□□ -0.81
SCN9A-202ENST00000409435 ATAD2BQ9ULI0 1458 aa10□□□□□ -0.81
SCN9A-202ENST00000409435 PTPRGP23470 1445 aa9.99□□□□□ -0.81
SCN9A-202ENST00000409435 MYO15BQ96JP2 1530 aa9.99□□□□□ -0.81
SCN9A-202ENST00000409435 CCNB3Q8WWL7 1395 aa9.98□□□□□ -0.81
SCN9A-202ENST00000409435 MRC2Q9UBG0 1479 aa9.97□□□□□ -0.81
SCN9A-202ENST00000409435 KDM2AQ9Y2K7 1162 aa9.96□□□□□ -0.81
SCN9A-202ENST00000409435 CLSPNQ9HAW4 1339 aa9.96□□□□□ -0.81
SCN9A-202ENST00000409435 CSB-PGBD3P0DP91 1061 aa9.94□□□□□ -0.82
SCN9A-202ENST00000409435 PIP4K2BP78356 416 aa9.94□□□□□ -0.82
SCN9A-202ENST00000409435 WASHC2CQ9Y4E1 1318 aa9.93□□□□□ -0.82
SCN9A-202ENST00000409435 DMRT2Q9Y5R5 561 aa9.92□□□□□ -0.82
SCN9A-202ENST00000409435 HRCP23327 699 aa9.92□□□□□ -0.82
SCN9A-202ENST00000409435 PAK3O75914 559 aaPredicted RBP9.92□□□□□ -0.82
SCN9A-202ENST00000409435 TMX4Q9H1E5 349 aaPredicted RBP9.91□□□□□ -0.82
SCN9A-202ENST00000409435 TMC1Q8TDI8 760 aa9.91□□□□□ -0.82
SCN9A-202ENST00000409435 RGL3Q3MIN7 710 aa9.9□□□□□ -0.82
SCN9A-202ENST00000409435 RRP7BPQ9NSQ0 103 aa9.9□□□□□ -0.83
SCN9A-202ENST00000409435 SPAG9O60271 1321 aaKnown RBP9.9□□□□□ -0.83
SCN9A-202ENST00000409435 POGZQ7Z3K3 1410 aa9.89□□□□□ -0.83
SCN9A-202ENST00000409435 KIF3BO15066 747 aa9.88□□□□□ -0.83
SCN9A-202ENST00000409435 KLHL34Q8N239 644 aa9.88□□□□□ -0.83
SCN9A-202ENST00000409435 ACIN1Q9UKV3 1341 aaKnown RBP9.88□□□□□ -0.83
SCN9A-202ENST00000409435 ATF3P18847 181 aa9.88□□□□□ -0.83
SCN9A-202ENST00000409435 BCL11AQ9H165 835 aa9.88□□□□□ -0.83
SCN9A-202ENST00000409435 MROH2BQ7Z745 1585 aa9.87□□□□□ -0.83
SCN9A-202ENST00000409435 MSH5O43196 834 aa9.87□□□□□ -0.83
SCN9A-202ENST00000409435 NCAPD3P42695 1498 aa9.87□□□□□ -0.83
SCN9A-202ENST00000409435 CANXP27824 592 aaKnown RBP9.86□□□□□ -0.83
SCN9A-202ENST00000409435 GOLGA3Q08378 1498 aa9.86□□□□□ -0.83
SCN9A-202ENST00000409435 IFT140Q96RY7 1462 aa9.86□□□□□ -0.83
SCN9A-202ENST00000409435 ANP32BQ92688 251 aaKnown RBP9.86□□□□□ -0.83
SCN9A-202ENST00000409435 EVA1CP58658 441 aa9.86□□□□□ -0.83
SCN9A-202ENST00000409435 TNNT2P45379 298 aaPredicted RBP9.84□□□□□ -0.83
SCN9A-202ENST00000409435 AQRO60306 1485 aaKnown RBP eCLIP9.84□□□□□ -0.831e-7■■■□□ 15.4
SCN9A-202ENST00000409435 EEA1Q15075 1411 aa9.83□□□□□ -0.84
SCN9A-202ENST00000409435 CCDC88BA6NC98 1476 aa9.83□□□□□ -0.84
SCN9A-202ENST00000409435 TRIM26Q12899 539 aaPredicted RBP9.83□□□□□ -0.84
SCN9A-202ENST00000409435 EIF4G2P78344 907 aaKnown RBP eCLIP9.82□□□□□ -0.84
SCN9A-202ENST00000409435 GTF3C3Q9Y5Q9 886 aa9.82□□□□□ -0.84
SCN9A-202ENST00000409435 GAPVD1Q14C86 1478 aa9.82□□□□□ -0.84
SCN9A-202ENST00000409435 SMARCA4P51532 1647 aa9.82□□□□□ -0.84
SCN9A-202ENST00000409435 PPM1GO15355 546 aaPredicted RBP9.82□□□□□ -0.84
SCN9A-202ENST00000409435 STK26Q9P289 416 aa9.81□□□□□ -0.84
SCN9A-202ENST00000409435 SOX12O15370 315 aa9.8□□□□□ -0.84
SCN9A-202ENST00000409435 NESP48681 1621 aa9.8□□□□□ -0.84
SCN9A-202ENST00000409435 FHAD1B1AJZ9 1412 aa9.8□□□□□ -0.84
SCN9A-202ENST00000409435 ANP32AP39687 249 aaKnown RBP9.79□□□□□ -0.84
SCN9A-202ENST00000409435 DNAJC5Q9H3Z4 198 aa9.79□□□□□ -0.84
SCN9A-202ENST00000409435 TONSLQ96HA7 1378 aa9.79□□□□□ -0.84
SCN9A-202ENST00000409435 GRIN2BQ13224 1484 aa9.79□□□□□ -0.84
SCN9A-202ENST00000409435 NUTM2BA6NNL0 878 aaPredicted RBP9.78□□□□□ -0.84
SCN9A-202ENST00000409435 NUTM2EB1AL46 878 aaPredicted RBP9.78□□□□□ -0.84
SCN9A-202ENST00000409435 RSPH4AQ5TD94 716 aa9.78□□□□□ -0.84
SCN9A-202ENST00000409435 NUTM2AQ8IVF1 878 aaPredicted RBP9.78□□□□□ -0.84
SCN9A-202ENST00000409435 SRPK2P78362 688 aaKnown RBP9.78□□□□□ -0.84
SCN9A-202ENST00000409435 NGDNQ8NEJ9 315 aaKnown RBP9.78□□□□□ -0.84
SCN9A-202ENST00000409435 PRG4Q92954 1404 aaPredicted RBP9.77□□□□□ -0.84
SCN9A-202ENST00000409435 TOP2AP11388 1531 aaKnown RBP9.77□□□□□ -0.84
SCN9A-202ENST00000409435 TNIKQ9UKE5 1360 aa9.77□□□□□ -0.85
SCN9A-202ENST00000409435 SAFB2Q14151 953 aaKnown RBP eCLIP9.77□□□□□ -0.85
SCN9A-202ENST00000409435 CDCA8Q53HL2 280 aa9.76□□□□□ -0.85
SCN9A-202ENST00000409435 PROSER2Q86WR7 435 aaPredicted RBP9.76□□□□□ -0.85
SCN9A-202ENST00000409435 HNRNPMP52272 730 aaKnown RBP eCLIP9.76□□□□□ -0.854e-9■■■□□ 16.5
SCN9A-202ENST00000409435 CDK11BP21127 795 aaKnown RBP9.75□□□□□ -0.85
SCN9A-202ENST00000409435 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.74□□□□□ -0.85
SCN9A-202ENST00000409435 THEMISQ8N1K5 641 aaPredicted RBP9.74□□□□□ -0.85
SCN9A-202ENST00000409435 PPP1R1BQ9UD71 204 aaPredicted RBP9.74□□□□□ -0.85
SCN9A-202ENST00000409435 UBAP1LF5GYI3 381 aa9.73□□□□□ -0.85
SCN9A-202ENST00000409435 NUTM2DQ5VT03 806 aaPredicted RBP9.73□□□□□ -0.85
SCN9A-202ENST00000409435 ANKLE2Q86XL3 938 aa9.73□□□□□ -0.85
SCN9A-202ENST00000409435 G3V3G9 751 aa9.73□□□□□ -0.85
SCN9A-202ENST00000409435 DCAF8Q5TAQ9 597 aa9.73□□□□□ -0.85
SCN9A-202ENST00000409435 TOM1O60784 492 aa9.72□□□□□ -0.85
SCN9A-202ENST00000409435 FMN1Q68DA7 1419 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms