RNA–Protein interactions for RNA: ENST00000409031.5

SMPD4-202, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD4, Length 4,896 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-202ENST00000409031 BECN1Q14457 450 aa23.48■■□□□ 1.35
SMPD4-202ENST00000409031 LAS1LQ9Y4W2 734 aaKnown RBP23.45■■□□□ 1.34
SMPD4-202ENST00000409031 TRIM44Q96DX7 344 aaPredicted RBP23.43■■□□□ 1.34
SMPD4-202ENST00000409031 RSF1Q96T23 1441 aaPredicted RBP23.43■■□□□ 1.34
SMPD4-202ENST00000409031 B4GALNT3Q6L9W6 998 aa23.42■■□□□ 1.34
SMPD4-202ENST00000409031 TIMELESSQ9UNS1 1208 aa23.34■■□□□ 1.33
SMPD4-202ENST00000409031 NAP1L5Q96NT1 182 aaPredicted RBP23.33■■□□□ 1.33
SMPD4-202ENST00000409031 SCRIBQ14160 1630 aa23.32■■□□□ 1.32
SMPD4-202ENST00000409031 WDR43Q15061 677 aaKnown RBP eCLIP23.27■■□□□ 1.32
SMPD4-202ENST00000409031 TNNT2P45379 298 aaPredicted RBP23.26■■□□□ 1.31
SMPD4-202ENST00000409031 CHIC2Q9UKJ5 165 aa23.22■■□□□ 1.31
SMPD4-202ENST00000409031 SIN3AQ96ST3 1273 aa23.21■■□□□ 1.31
SMPD4-202ENST00000409031 CEP164Q9UPV0 1460 aa23.2■■□□□ 1.31
SMPD4-202ENST00000409031 GOLGA6L22H0YM25 854 aa23.19■■□□□ 1.3
SMPD4-202ENST00000409031 L1TD1Q5T7N2 865 aaKnown RBP23.16■■□□□ 1.3
SMPD4-202ENST00000409031 FANCIQ9NVI1 1328 aa23.16■■□□□ 1.3
SMPD4-202ENST00000409031 IPO9Q96P70 1041 aaKnown RBP23.16■■□□□ 1.3
SMPD4-202ENST00000409031 MTUS2Q5JR59 1369 aa23.16■■□□□ 1.3
SMPD4-202ENST00000409031 ZNF777Q9ULD5 760 aaPredicted RBP23.14■■□□□ 1.3
SMPD4-202ENST00000409031 ARID3CA6NKF2 412 aa23.12■■□□□ 1.29
SMPD4-202ENST00000409031 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.12■■□□□ 1.29
SMPD4-202ENST00000409031 CCNB3Q8WWL7 1395 aa23.1■■□□□ 1.29
SMPD4-202ENST00000409031 RB1CC1Q8TDY2 1594 aa23.09■■□□□ 1.29
SMPD4-202ENST00000409031 USP35Q9P2H5 1018 aa23.07■■□□□ 1.28
SMPD4-202ENST00000409031 TCERG1O14776 1098 aaKnown RBP23.06■■□□□ 1.28
SMPD4-202ENST00000409031 WRNQ14191 1432 aaPredicted RBP eCLIP23.03■■□□□ 1.285e-6■■■■■ 34.5
SMPD4-202ENST00000409031 RRP7BPQ9NSQ0 103 aa23.02■■□□□ 1.28
SMPD4-202ENST00000409031 RGS3P49796 1198 aa23.01■■□□□ 1.27
SMPD4-202ENST00000409031 KDM2AQ9Y2K7 1162 aa23■■□□□ 1.27
SMPD4-202ENST00000409031 SENP3-EIF4A1A0A087X0R7 540 aa22.99■■□□□ 1.27
SMPD4-202ENST00000409031 VPS8Q8N3P4 1428 aa22.99■■□□□ 1.27
SMPD4-202ENST00000409031 PNNQ9H307 717 aaKnown RBP22.97■■□□□ 1.27
SMPD4-202ENST00000409031 PTMAP06454 111 aaKnown RBP22.94■■□□□ 1.26
SMPD4-202ENST00000409031 NCLP19338 710 aaKnown RBP22.94■■□□□ 1.26
SMPD4-202ENST00000409031 RSPH6AQ9H0K4 717 aa22.93■■□□□ 1.26
SMPD4-202ENST00000409031 DNTTIP2Q5QJE6 756 aaKnown RBP22.92■■□□□ 1.26
SMPD4-202ENST00000409031 SETD5Q9C0A6 1442 aa22.91■■□□□ 1.26
SMPD4-202ENST00000409031 MYH16Q9H6N6 1097 aa22.88■■□□□ 1.25
SMPD4-202ENST00000409031 SOGA1O94964 1423 aa22.86■■□□□ 1.25
SMPD4-202ENST00000409031 KCNH8Q96L42 1107 aa22.85■■□□□ 1.25
SMPD4-202ENST00000409031 PPP1R15AO75807 674 aaPredicted RBP22.85■■□□□ 1.25
SMPD4-202ENST00000409031 HSPA5P11021 654 aaKnown RBP22.84■■□□□ 1.25
SMPD4-202ENST00000409031 TSPY4P0CV99 314 aa22.83■■□□□ 1.25
SMPD4-202ENST00000409031 TSPY10P0CW01 314 aa22.83■■□□□ 1.25
SMPD4-202ENST00000409031 MSNP26038 577 aaKnown RBP22.83■■□□□ 1.24
SMPD4-202ENST00000409031 CARD11Q9BXL7 1154 aa22.83■■□□□ 1.24
SMPD4-202ENST00000409031 NUDCQ9Y266 331 aa22.82■■□□□ 1.24
SMPD4-202ENST00000409031 SLC24A1O60721 1099 aa22.8■■□□□ 1.24
SMPD4-202ENST00000409031 RCAN3Q9UKA8 241 aa22.79■■□□□ 1.24
SMPD4-202ENST00000409031 RAB3GAP2Q9H2M9 1393 aa22.79■■□□□ 1.24
SMPD4-202ENST00000409031 GSE1Q14687 1217 aa22.78■■□□□ 1.24
SMPD4-202ENST00000409031 KNSTRNQ9Y448 316 aa22.77■■□□□ 1.24
SMPD4-202ENST00000409031 DHX57Q6P158 1386 aaKnown RBP22.76■■□□□ 1.23
SMPD4-202ENST00000409031 CDK11BP21127 795 aaKnown RBP22.76■■□□□ 1.23
SMPD4-202ENST00000409031 KIF27Q86VH2 1401 aa22.76■■□□□ 1.23
SMPD4-202ENST00000409031 HSCBQ8IWL3 235 aa22.75■■□□□ 1.23
SMPD4-202ENST00000409031 CDCA8Q53HL2 280 aa22.75■■□□□ 1.23
SMPD4-202ENST00000409031 HSP90AB1P08238 724 aaKnown RBP22.74■■□□□ 1.23
SMPD4-202ENST00000409031 HSP90AA2PQ14568 343 aaPredicted RBP22.74■■□□□ 1.23
SMPD4-202ENST00000409031 FBLN2P98095 1184 aa22.74■■□□□ 1.23
SMPD4-202ENST00000409031 FTSJ3Q8IY81 847 aaKnown RBP22.72■■□□□ 1.23
SMPD4-202ENST00000409031 GOLGA6L3A6NEY3 463 aa22.72■■□□□ 1.23
SMPD4-202ENST00000409031 KANK4Q5T7N3 995 aaPredicted RBP22.71■■□□□ 1.23
SMPD4-202ENST00000409031 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.69■■□□□ 1.226e-7■■■□□ 16.9
SMPD4-202ENST00000409031 FHAD1B1AJZ9 1412 aa22.68■■□□□ 1.22
SMPD4-202ENST00000409031 PTMSP20962 102 aa22.68■■□□□ 1.22
SMPD4-202ENST00000409031 MS4A1P11836 297 aa22.68■■□□□ 1.22
SMPD4-202ENST00000409031 ARID4BQ4LE39 1312 aaPredicted RBP22.66■■□□□ 1.22
SMPD4-202ENST00000409031 VSIG10Q8N0Z9 540 aa22.66■■□□□ 1.22
SMPD4-202ENST00000409031 PDE4AP27815 886 aa22.65■■□□□ 1.22
SMPD4-202ENST00000409031 FRAT1Q92837 279 aaPredicted RBP22.65■■□□□ 1.22
SMPD4-202ENST00000409031 SLKQ9H2G2 1235 aaPredicted RBP22.65■■□□□ 1.22
SMPD4-202ENST00000409031 CASC1Q6TDU7 716 aa22.64■■□□□ 1.22
SMPD4-202ENST00000409031 NACADO15069 1562 aa22.64■■□□□ 1.21
SMPD4-202ENST00000409031 CFAP53Q96M91 514 aa22.63■■□□□ 1.21
SMPD4-202ENST00000409031 GBP4Q96PP9 640 aa22.63■■□□□ 1.21
SMPD4-202ENST00000409031 PRKCSHP14314 528 aaPredicted RBP22.62■■□□□ 1.21
SMPD4-202ENST00000409031 CHAF1AQ13111 956 aaPredicted RBP22.62■■□□□ 1.21
SMPD4-202ENST00000409031 PDE3BQ13370 1112 aa22.62■■□□□ 1.21
SMPD4-202ENST00000409031 GZF1Q9H116 711 aaPredicted RBP22.62■■□□□ 1.21
SMPD4-202ENST00000409031 ZBED9Q6R2W3 1325 aa22.62■■□□□ 1.21
SMPD4-202ENST00000409031 CHGAP10645 457 aaKnown RBP22.61■■□□□ 1.21
SMPD4-202ENST00000409031 CCDC88BA6NC98 1476 aa22.59■■□□□ 1.21
SMPD4-202ENST00000409031 RALBP1Q15311 655 aa22.59■■□□□ 1.21
SMPD4-202ENST00000409031 CHMP4BQ9H444 224 aaKnown RBP22.58■■□□□ 1.21
SMPD4-202ENST00000409031 RGL3Q3MIN7 710 aa22.58■■□□□ 1.21
SMPD4-202ENST00000409031 CC2D1BQ5T0F9 858 aaKnown RBP22.57■■□□□ 1.2
SMPD4-202ENST00000409031 SPRYD3Q8NCJ5 442 aa22.57■■□□□ 1.2
SMPD4-202ENST00000409031 ANO8Q9HCE9 1232 aaPredicted RBP22.56■■□□□ 1.2
SMPD4-202ENST00000409031 BAZ1AQ9NRL2 1556 aaPredicted RBP22.53■■□□□ 1.2
SMPD4-202ENST00000409031 NEUROD2Q15784 382 aa22.53■■□□□ 1.2
SMPD4-202ENST00000409031 PLCB2Q00722 1185 aa22.53■■□□□ 1.2
SMPD4-202ENST00000409031 CECR2Q9BXF3 1484 aa22.52■■□□□ 1.2
SMPD4-202ENST00000409031 KTN1Q86UP2 1357 aaKnown RBP22.52■■□□□ 1.2
SMPD4-202ENST00000409031 ARHGAP35Q9NRY4 1499 aa22.49■■□□□ 1.19
SMPD4-202ENST00000409031 PRKRIP1Q9H875 184 aaPredicted RBP22.49■■□□□ 1.19
SMPD4-202ENST00000409031 FAM161AQ3B820 660 aa22.47■■□□□ 1.19
SMPD4-202ENST00000409031 CFAP44Q96MT7 982 aa22.47■■□□□ 1.19
SMPD4-202ENST00000409031 TMF1P82094 1093 aa22.47■■□□□ 1.19
SMPD4-202ENST00000409031 CFDP1Q9UEE9 299 aaPredicted RBP22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms