RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 WDR43Q15061 677 aaKnown RBP eCLIP24.46■■□□□ 1.513e-6■■□□□ 12.1
COL18A1-204ENST00000400337 PLEKHD1A6NEE1 506 aa24.44■■□□□ 1.5
COL18A1-204ENST00000400337 CCDC136Q96JN2 1154 aa24.43■■□□□ 1.5
COL18A1-204ENST00000400337 KIF27Q86VH2 1401 aa24.42■■□□□ 1.5
COL18A1-204ENST00000400337 TNIKQ9UKE5 1360 aa24.4■■□□□ 1.5
COL18A1-204ENST00000400337 UPF2Q9HAU5 1272 aaKnown RBP24.36■■□□□ 1.49
COL18A1-204ENST00000400337 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.36■■□□□ 1.49
COL18A1-204ENST00000400337 HSP90AA1P07900 732 aaKnown RBP24.36■■□□□ 1.49
COL18A1-204ENST00000400337 CEP164Q9UPV0 1460 aa24.35■■□□□ 1.49
COL18A1-204ENST00000400337 SENP3Q9H4L4 574 aaPredicted RBP24.34■■□□□ 1.49
COL18A1-204ENST00000400337 IRX6P78412 446 aaPredicted RBP24.34■■□□□ 1.49
COL18A1-204ENST00000400337 RGL3Q3MIN7 710 aa24.32■■□□□ 1.48
COL18A1-204ENST00000400337 CFDP1Q9UEE9 299 aaPredicted RBP24.31■■□□□ 1.48
COL18A1-204ENST00000400337 CECR2Q9BXF3 1484 aa24.28■■□□□ 1.48
COL18A1-204ENST00000400337 BAZ1AQ9NRL2 1556 aaPredicted RBP24.25■■□□□ 1.47
COL18A1-204ENST00000400337 SCAF1Q9H7N4 1312 aaKnown RBP24.24■■□□□ 1.47
COL18A1-204ENST00000400337 PPP1R15AO75807 674 aaPredicted RBP24.18■■□□□ 1.46
COL18A1-204ENST00000400337 SIN3AQ96ST3 1273 aa24.16■■□□□ 1.46
COL18A1-204ENST00000400337 SENP3-EIF4A1A0A087X0R7 540 aa24.15■■□□□ 1.46
COL18A1-204ENST00000400337 ANP32BQ92688 251 aaKnown RBP24.13■■□□□ 1.45
COL18A1-204ENST00000400337 CARD11Q9BXL7 1154 aa24.12■■□□□ 1.45
COL18A1-204ENST00000400337 SOGA1O94964 1423 aa24.11■■□□□ 1.45
COL18A1-204ENST00000400337 NBR1Q14596 966 aa24.09■■□□□ 1.45
COL18A1-204ENST00000400337 PLEKHG5O94827 1062 aa24.08■■□□□ 1.45
COL18A1-204ENST00000400337 KNSTRNQ9Y448 316 aa24.05■■□□□ 1.44
COL18A1-204ENST00000400337 ERCC6Q03468 1493 aa24.05■■□□□ 1.44
COL18A1-204ENST00000400337 CARMIL1Q5VZK9 1371 aa24.05■■□□□ 1.44
COL18A1-204ENST00000400337 ZBTB7CA1YPR0 619 aa24.05■■□□□ 1.44
COL18A1-204ENST00000400337 C14orf37Q86TY3 774 aa24.05■■□□□ 1.44
COL18A1-204ENST00000400337 CDCA8Q53HL2 280 aa24.03■■□□□ 1.44
COL18A1-204ENST00000400337 CUX2O14529 1486 aa24.03■■□□□ 1.44
COL18A1-204ENST00000400337 MYH16Q9H6N6 1097 aa24.03■■□□□ 1.44
COL18A1-204ENST00000400337 CCNB3Q8WWL7 1395 aa24.02■■□□□ 1.44
COL18A1-204ENST00000400337 FHAD1B1AJZ9 1412 aa24■■□□□ 1.43
COL18A1-204ENST00000400337 CFAP53Q96M91 514 aa23.98■■□□□ 1.43
COL18A1-204ENST00000400337 ARID4BQ4LE39 1312 aaPredicted RBP23.98■■□□□ 1.43
COL18A1-204ENST00000400337 EIF5BO60841 1220 aaKnown RBP23.97■■□□□ 1.43
COL18A1-204ENST00000400337 SUPT16HQ9Y5B9 1047 aaKnown RBP23.96■■□□□ 1.43
COL18A1-204ENST00000400337 PPM1GO15355 546 aaPredicted RBP23.94■■□□□ 1.42
COL18A1-204ENST00000400337 ARXQ96QS3 562 aa23.94■■□□□ 1.42
COL18A1-204ENST00000400337 EIF4G1Q04637 1599 aaKnown RBP23.93■■□□□ 1.42
COL18A1-204ENST00000400337 A0A0G2JS52 829 aa23.93■■□□□ 1.42
COL18A1-204ENST00000400337 MROH2BQ7Z745 1585 aa23.93■■□□□ 1.42
COL18A1-204ENST00000400337 CCDC88BA6NC98 1476 aa23.91■■□□□ 1.42
COL18A1-204ENST00000400337 NEUROD2Q15784 382 aa23.89■■□□□ 1.41
COL18A1-204ENST00000400337 ABCC8Q09428 1581 aa23.86■■□□□ 1.41
COL18A1-204ENST00000400337 DCAF11Q8TEB1 546 aa23.84■■□□□ 1.41
COL18A1-204ENST00000400337 POGKQ9P215 609 aa23.83■■□□□ 1.41
COL18A1-204ENST00000400337 VPS8Q8N3P4 1428 aa23.83■■□□□ 1.4
COL18A1-204ENST00000400337 CC2D1BQ5T0F9 858 aaKnown RBP23.83■■□□□ 1.4
COL18A1-204ENST00000400337 KANK4Q5T7N3 995 aaPredicted RBP23.83■■□□□ 1.4
COL18A1-204ENST00000400337 TNNT2P45379 298 aaPredicted RBP23.81■■□□□ 1.4
COL18A1-204ENST00000400337 MAPK8IP3Q9UPT6 1336 aa23.78■■□□□ 1.4
COL18A1-204ENST00000400337 FTSJ3Q8IY81 847 aaKnown RBP23.77■■□□□ 1.4
COL18A1-204ENST00000400337 BECN1Q14457 450 aa23.76■■□□□ 1.39
COL18A1-204ENST00000400337 DDRGK1Q96HY6 314 aa23.76■■□□□ 1.39
COL18A1-204ENST00000400337 LAS1LQ9Y4W2 734 aaKnown RBP23.76■■□□□ 1.39
COL18A1-204ENST00000400337 SETD5Q9C0A6 1442 aa23.76■■□□□ 1.39
COL18A1-204ENST00000400337 NUDCQ9Y266 331 aa23.76■■□□□ 1.39
COL18A1-204ENST00000400337 TIMELESSQ9UNS1 1208 aa23.75■■□□□ 1.39
COL18A1-204ENST00000400337 ARHGAP35Q9NRY4 1499 aa23.73■■□□□ 1.39
COL18A1-204ENST00000400337 TMF1P82094 1093 aa23.73■■□□□ 1.39
COL18A1-204ENST00000400337 HAP1P54257 671 aaPredicted RBP23.71■■□□□ 1.39
COL18A1-204ENST00000400337 FRAT1Q92837 279 aaPredicted RBP23.69■■□□□ 1.38
COL18A1-204ENST00000400337 TDRD9Q8NDG6 1382 aaKnown RBP23.69■■□□□ 1.38
COL18A1-204ENST00000400337 FOXD1Q16676 465 aa23.69■■□□□ 1.38
COL18A1-204ENST00000400337 PPP4R2Q9NY27 417 aa23.69■■□□□ 1.38
COL18A1-204ENST00000400337 KANK1Q14678 1352 aa23.68■■□□□ 1.38
COL18A1-204ENST00000400337 SMARCA2P51531 1590 aa23.68■■□□□ 1.38
COL18A1-204ENST00000400337 U2SURPO15042 1029 aaKnown RBP23.67■■□□□ 1.38
COL18A1-204ENST00000400337 PKD2Q13563 968 aa23.67■■□□□ 1.38
COL18A1-204ENST00000400337 HSPA5P11021 654 aaKnown RBP23.66■■□□□ 1.38
COL18A1-204ENST00000400337 LMOD2Q6P5Q4 547 aa23.66■■□□□ 1.38
COL18A1-204ENST00000400337 RGS3P49796 1198 aa23.63■■□□□ 1.37
COL18A1-204ENST00000400337 MLECQ14165 292 aa23.62■■□□□ 1.37
COL18A1-204ENST00000400337 PDS5BQ9NTI5 1447 aa23.62■■□□□ 1.37
COL18A1-204ENST00000400337 RAB3GAP2Q9H2M9 1393 aa23.59■■□□□ 1.37
COL18A1-204ENST00000400337 GGT6Q6P531 493 aa23.59■■□□□ 1.37
COL18A1-204ENST00000400337 CARMIL2Q6F5E8 1435 aa23.59■■□□□ 1.37
COL18A1-204ENST00000400337 B4GALNT3Q6L9W6 998 aa23.59■■□□□ 1.37
COL18A1-204ENST00000400337 SAFB2Q14151 953 aaKnown RBP eCLIP23.58■■□□□ 1.37
COL18A1-204ENST00000400337 SRPK2P78362 688 aaKnown RBP23.57■■□□□ 1.36
COL18A1-204ENST00000400337 FMN1Q68DA7 1419 aa23.57■■□□□ 1.36
COL18A1-204ENST00000400337 CCER2I3L3R5 266 aa23.57■■□□□ 1.36
COL18A1-204ENST00000400337 NCLP19338 710 aaKnown RBP23.56■■□□□ 1.36
COL18A1-204ENST00000400337 GOLGA6L22H0YM25 854 aa23.55■■□□□ 1.36
COL18A1-204ENST00000400337 MPHOSPH9Q99550 1183 aa23.55■■□□□ 1.36
COL18A1-204ENST00000400337 WIZO95785 1651 aa23.55■■□□□ 1.36
COL18A1-204ENST00000400337 CASC1Q6TDU7 716 aa23.55■■□□□ 1.36
COL18A1-204ENST00000400337 TOP2AP11388 1531 aaKnown RBP23.53■■□□□ 1.36
COL18A1-204ENST00000400337 MORC1Q86VD1 984 aa23.52■■□□□ 1.36
COL18A1-204ENST00000400337 NUP155O75694 1391 aa23.5■■□□□ 1.35
COL18A1-204ENST00000400337 SOX12O15370 315 aa23.5■■□□□ 1.35
COL18A1-204ENST00000400337 PNNQ9H307 717 aaKnown RBP23.5■■□□□ 1.35
COL18A1-204ENST00000400337 GLIPR1L2Q4G1C9 344 aa23.5■■□□□ 1.35
COL18A1-204ENST00000400337 TRHP20396 242 aaPredicted RBP23.48■■□□□ 1.35
COL18A1-204ENST00000400337 ANP32EQ9BTT0 268 aa23.48■■□□□ 1.35
COL18A1-204ENST00000400337 MS4A1P11836 297 aa23.48■■□□□ 1.35
COL18A1-204ENST00000400337 STK26Q9P289 416 aa23.48■■□□□ 1.35
COL18A1-204ENST00000400337 HDGFP51858 240 aaKnown RBP23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms