RNA–Protein interactions for RNA: ENST00000399438.7

TRAPPC13-202, Transcript of trafficking protein particle complex 13, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TRAPPC13, Length 3,221 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC13-202ENST00000399438 TRIM41Q8WV44 630 aa9.51□□□□□ -0.89
TRAPPC13-202ENST00000399438 CC2D2AQ9P2K1 1620 aa9.5□□□□□ -0.89
TRAPPC13-202ENST00000399438 WIZO95785 1651 aa9.5□□□□□ -0.89
TRAPPC13-202ENST00000399438 HSP90B1P14625 803 aaKnown RBP9.49□□□□□ -0.89
TRAPPC13-202ENST00000399438 IFNLR1Q8IU57 520 aaPredicted RBP9.49□□□□□ -0.89
TRAPPC13-202ENST00000399438 SMARCA2P51531 1590 aa9.49□□□□□ -0.89
TRAPPC13-202ENST00000399438 ATAD2BQ9ULI0 1458 aa9.49□□□□□ -0.89
TRAPPC13-202ENST00000399438 ATXN8OSP0DMR3 200 aa9.48□□□□□ -0.89
TRAPPC13-202ENST00000399438 HMGB1P09429 215 aaKnown RBP9.47□□□□□ -0.89
TRAPPC13-202ENST00000399438 ZBTB7CA1YPR0 619 aa9.46□□□□□ -0.89
TRAPPC13-202ENST00000399438 UBE2Q2Q8WVN8 375 aa9.46□□□□□ -0.9
TRAPPC13-202ENST00000399438 C1orf115Q9H7X2 142 aa9.45□□□□□ -0.9
TRAPPC13-202ENST00000399438 NCAPD3P42695 1498 aa9.45□□□□□ -0.9
TRAPPC13-202ENST00000399438 ARID3AQ99856 593 aa9.44□□□□□ -0.9
TRAPPC13-202ENST00000399438 HMGXB3Q12766 1538 aa9.44□□□□□ -0.9
TRAPPC13-202ENST00000399438 PUS7Q96PZ0 661 aaKnown RBP9.43□□□□□ -0.9
TRAPPC13-202ENST00000399438 TOP2AP11388 1531 aaKnown RBP9.42□□□□□ -0.9
TRAPPC13-202ENST00000399438 ZMYND15Q9H091 742 aa9.41□□□□□ -0.9
TRAPPC13-202ENST00000399438 VASPP50552 380 aaPredicted RBP9.41□□□□□ -0.9
TRAPPC13-202ENST00000399438 BAZ1BQ9UIG0 1483 aaKnown RBP9.41□□□□□ -0.9
TRAPPC13-202ENST00000399438 DHX37Q8IY37 1157 aaKnown RBP9.4□□□□□ -0.91
TRAPPC13-202ENST00000399438 BRD2P25440 801 aaKnown RBP9.38□□□□□ -0.91
TRAPPC13-202ENST00000399438 RSPH6AQ9H0K4 717 aa9.38□□□□□ -0.91
TRAPPC13-202ENST00000399438 BCL11AQ9H165 835 aa9.31□□□□□ -0.92
TRAPPC13-202ENST00000399438 RGS22Q8NE09 1264 aa9.3□□□□□ -0.92
TRAPPC13-202ENST00000399438 CCDC88BA6NC98 1476 aa9.3□□□□□ -0.92
TRAPPC13-202ENST00000399438 SLC4A2P04920 1241 aa9.26□□□□□ -0.93
TRAPPC13-202ENST00000399438 RGL2O15211 777 aa9.25□□□□□ -0.93
TRAPPC13-202ENST00000399438 ECM2O94769 699 aaPredicted RBP9.25□□□□□ -0.93
TRAPPC13-202ENST00000399438 PDE4CQ08493 712 aa9.25□□□□□ -0.93
TRAPPC13-202ENST00000399438 NEUROD2Q15784 382 aa9.25□□□□□ -0.93
TRAPPC13-202ENST00000399438 KCTD17Q8N5Z5 321 aa9.25□□□□□ -0.93
TRAPPC13-202ENST00000399438 ZNF428Q96B54 188 aa9.24□□□□□ -0.93
TRAPPC13-202ENST00000399438 RAD21O60216 631 aa9.22□□□□□ -0.93
TRAPPC13-202ENST00000399438 TAF7LQ5H9L4 462 aa9.22□□□□□ -0.93
TRAPPC13-202ENST00000399438 ARID3CA6NKF2 412 aa9.22□□□□□ -0.93
TRAPPC13-202ENST00000399438 MTMR7Q9Y216 660 aa9.2□□□□□ -0.94
TRAPPC13-202ENST00000399438 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.18□□□□□ -0.94
TRAPPC13-202ENST00000399438 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.18□□□□□ -0.94
TRAPPC13-202ENST00000399438 CFTRP13569 1480 aa9.18□□□□□ -0.94
TRAPPC13-202ENST00000399438 LMOD2Q6P5Q4 547 aa9.18□□□□□ -0.94
TRAPPC13-202ENST00000399438 FOXD1Q16676 465 aa9.17□□□□□ -0.94
TRAPPC13-202ENST00000399438 PRDM2Q13029 1718 aa9.17□□□□□ -0.94
TRAPPC13-202ENST00000399438 ABCC8Q09428 1581 aa9.17□□□□□ -0.94
TRAPPC13-202ENST00000399438 LAMC3Q9Y6N6 1575 aa9.17□□□□□ -0.94
TRAPPC13-202ENST00000399438 CADPSQ9ULU8 1353 aa9.16□□□□□ -0.94
TRAPPC13-202ENST00000399438 MYCNP04198 464 aaPredicted RBP9.16□□□□□ -0.94
TRAPPC13-202ENST00000399438 PROM2Q8N271 834 aa9.14□□□□□ -0.95
TRAPPC13-202ENST00000399438 NESP48681 1621 aa9.14□□□□□ -0.95
TRAPPC13-202ENST00000399438 APBB1O00213 710 aa9.14□□□□□ -0.95
TRAPPC13-202ENST00000399438 MAPK8IP2Q13387 824 aaPredicted RBP9.13□□□□□ -0.95
TRAPPC13-202ENST00000399438 FOXD4L5Q5VV16 416 aaPredicted RBP9.13□□□□□ -0.95
TRAPPC13-202ENST00000399438 FOXD4L4Q8WXT5 416 aaPredicted RBP9.13□□□□□ -0.95
TRAPPC13-202ENST00000399438 RBM25P49756 843 aaKnown RBP9.12□□□□□ -0.95
TRAPPC13-202ENST00000399438 CHGAP10645 457 aaKnown RBP9.11□□□□□ -0.95
TRAPPC13-202ENST00000399438 ZNF692Q9BU19 519 aaPredicted RBP9.1□□□□□ -0.95
TRAPPC13-202ENST00000399438 SOGA1O94964 1423 aa9.1□□□□□ -0.95
TRAPPC13-202ENST00000399438 POLR3GLQ9BT43 218 aa9.09□□□□□ -0.95
TRAPPC13-202ENST00000399438 RUSC2Q8N2Y8 1516 aa9.08□□□□□ -0.96
TRAPPC13-202ENST00000399438 SLC24A3Q9HC58 644 aa9.07□□□□□ -0.96
TRAPPC13-202ENST00000399438 FANCD2Q9BXW9 1451 aa9.07□□□□□ -0.96
TRAPPC13-202ENST00000399438 CCER1Q8TC90 406 aaPredicted RBP9.07□□□□□ -0.96
TRAPPC13-202ENST00000399438 ATF5Q9Y2D1 282 aaPredicted RBP9.07□□□□□ -0.96
TRAPPC13-202ENST00000399438 KIF21AQ7Z4S6 1674 aa9.06□□□□□ -0.96
TRAPPC13-202ENST00000399438 PDS5BQ9NTI5 1447 aa9.06□□□□□ -0.96
TRAPPC13-202ENST00000399438 TRAIPQ9BWF2 469 aa9.06□□□□□ -0.96
TRAPPC13-202ENST00000399438 FAM177A1Q8N128 213 aaPredicted RBP9.05□□□□□ -0.96
TRAPPC13-202ENST00000399438 ZC3H15Q8WU90 426 aaKnown RBP9.03□□□□□ -0.96
TRAPPC13-202ENST00000399438 CEP164Q9UPV0 1460 aa9.03□□□□□ -0.96
TRAPPC13-202ENST00000399438 MFAP1P55081 439 aaKnown RBP9.03□□□□□ -0.96
TRAPPC13-202ENST00000399438 NEFLP07196 543 aa9.03□□□□□ -0.96
TRAPPC13-202ENST00000399438 CCDC82Q8N4S0 544 aa9.02□□□□□ -0.97
TRAPPC13-202ENST00000399438 BCCIPQ9P287 314 aaKnown RBP eCLIP9.01□□□□□ -0.97
TRAPPC13-202ENST00000399438 HNRNPUL2Q1KMD3 747 aaKnown RBP9.01□□□□□ -0.97
TRAPPC13-202ENST00000399438 TMCO4Q5TGY1 634 aa9.01□□□□□ -0.97
TRAPPC13-202ENST00000399438 PIAS4Q8N2W9 510 aaPredicted RBP9.01□□□□□ -0.97
TRAPPC13-202ENST00000399438 SPDYE4A6NLX3 237 aa9□□□□□ -0.97
TRAPPC13-202ENST00000399438 WRNQ14191 1432 aaPredicted RBP eCLIP8.99□□□□□ -0.97
TRAPPC13-202ENST00000399438 CUX1P39880 1505 aa8.99□□□□□ -0.97
TRAPPC13-202ENST00000399438 BCL11BQ9C0K0 894 aaPredicted RBP8.99□□□□□ -0.97
TRAPPC13-202ENST00000399438 BIVM-ERCC5R4GMW8 1640 aa8.99□□□□□ -0.97
TRAPPC13-202ENST00000399438 ERCC6Q03468 1493 aa8.99□□□□□ -0.97
TRAPPC13-202ENST00000399438 SYNJ1O43426 1573 aa8.99□□□□□ -0.97
TRAPPC13-202ENST00000399438 THOC2Q8NI27 1593 aaKnown RBP8.99□□□□□ -0.97
TRAPPC13-202ENST00000399438 AEBP1Q8IUX7 1158 aa8.99□□□□□ -0.97
TRAPPC13-202ENST00000399438 USP35Q9P2H5 1018 aa8.99□□□□□ -0.97
TRAPPC13-202ENST00000399438 MRC2Q9UBG0 1479 aa8.98□□□□□ -0.97
TRAPPC13-202ENST00000399438 URB2Q14146 1524 aaKnown RBP8.98□□□□□ -0.97
TRAPPC13-202ENST00000399438 DNMBPQ6XZF7 1577 aa8.98□□□□□ -0.97
TRAPPC13-202ENST00000399438 TOP2BQ02880 1626 aa8.98□□□□□ -0.97
TRAPPC13-202ENST00000399438 SPOCK2Q92563 424 aa8.97□□□□□ -0.97
TRAPPC13-202ENST00000399438 MKRN3Q13064 507 aaKnown RBP8.97□□□□□ -0.97
TRAPPC13-202ENST00000399438 WDR62O43379 1518 aa8.96□□□□□ -0.97
TRAPPC13-202ENST00000399438 E9PSI1 815 aa8.96□□□□□ -0.97
TRAPPC13-202ENST00000399438 TOPBP1Q92547 1522 aa8.96□□□□□ -0.98
TRAPPC13-202ENST00000399438 CEP162Q5TB80 1403 aa8.96□□□□□ -0.98
TRAPPC13-202ENST00000399438 NKX1-1Q15270 411 aaPredicted RBP8.95□□□□□ -0.98
TRAPPC13-202ENST00000399438 BRPF3Q9ULD4 1205 aa8.94□□□□□ -0.98
TRAPPC13-202ENST00000399438 HS6ST3Q8IZP7 471 aa8.93□□□□□ -0.98
TRAPPC13-202ENST00000399438 GZF1Q9H116 711 aaPredicted RBP8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms