RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 MAPKBP1O60336 1514 aa17.47■□□□□ 0.39
NEDD9-203ENST00000397378 PRG4Q92954 1404 aaPredicted RBP17.46■□□□□ 0.39
NEDD9-203ENST00000397378 HECW2Q9P2P5 1572 aa17.43■□□□□ 0.38
NEDD9-203ENST00000397378 ADGRL1O94910 1474 aa17.41■□□□□ 0.38
NEDD9-203ENST00000397378 FHAD1B1AJZ9 1412 aa17.38■□□□□ 0.37
NEDD9-203ENST00000397378 ADCY10Q96PN6 1610 aa17.37■□□□□ 0.37
NEDD9-203ENST00000397378 JPH4Q96JJ6 628 aa17.36■□□□□ 0.37
NEDD9-203ENST00000397378 WRNQ14191 1432 aaPredicted RBP eCLIP17.3■□□□□ 0.36
NEDD9-203ENST00000397378 ERICH3Q5RHP9 1530 aa17.28■□□□□ 0.36
NEDD9-203ENST00000397378 RUSC2Q8N2Y8 1516 aa17.28■□□□□ 0.36
NEDD9-203ENST00000397378 FBXO41Q8TF61 875 aa17.28■□□□□ 0.36
NEDD9-203ENST00000397378 PPRC1Q5VV67 1664 aaKnown RBP17.21■□□□□ 0.35
NEDD9-203ENST00000397378 BIVM-ERCC5R4GMW8 1640 aa17.17■□□□□ 0.34
NEDD9-203ENST00000397378 TOP2BQ02880 1626 aa17.14■□□□□ 0.33
NEDD9-203ENST00000397378 GLI2P10070 1586 aa17.13■□□□□ 0.33
NEDD9-203ENST00000397378 COL17A1Q9UMD9 1497 aaPredicted RBP17.12■□□□□ 0.33
NEDD9-203ENST00000397378 TTBK1Q5TCY1 1321 aaPredicted RBP17.12■□□□□ 0.33
NEDD9-203ENST00000397378 ASXL2Q76L83 1435 aa17.11■□□□□ 0.33
NEDD9-203ENST00000397378 PLB1Q6P1J6 1458 aa17.1■□□□□ 0.33
NEDD9-203ENST00000397378 LMTK3Q96Q04 1460 aa17.09■□□□□ 0.33
NEDD9-203ENST00000397378 ABCC2Q92887 1545 aa17.09■□□□□ 0.33
NEDD9-203ENST00000397378 CUL7Q14999 1698 aa17.08■□□□□ 0.32
NEDD9-203ENST00000397378 KIAA0586Q9BVV6 1533 aa17.07■□□□□ 0.32
NEDD9-203ENST00000397378 PTPRGP23470 1445 aa17.07■□□□□ 0.32
NEDD9-203ENST00000397378 TEX14Q8IWB6 1497 aa17.05■□□□□ 0.32
NEDD9-203ENST00000397378 MAP3K4Q9Y6R4 1608 aa17.04■□□□□ 0.32
NEDD9-203ENST00000397378 EPRSP07814 1512 aaKnown RBP17■□□□□ 0.31
NEDD9-203ENST00000397378 TNIKQ9UKE5 1360 aa16.98■□□□□ 0.31
NEDD9-203ENST00000397378 CARMIL2Q6F5E8 1435 aa16.96■□□□□ 0.31
NEDD9-203ENST00000397378 UHRF1BP1LA0JNW5 1464 aa16.94■□□□□ 0.3
NEDD9-203ENST00000397378 KIF21BO75037 1637 aa16.94■□□□□ 0.3
NEDD9-203ENST00000397378 SUPT5HO00267 1087 aaKnown RBP16.93■□□□□ 0.3
NEDD9-203ENST00000397378 UACAQ9BZF9 1416 aa16.91■□□□□ 0.3
NEDD9-203ENST00000397378 ZCCHC11Q5TAX3 1644 aaKnown RBP16.9■□□□□ 0.3
NEDD9-203ENST00000397378 KDM5BQ9UGL1 1544 aa16.88■□□□□ 0.29
NEDD9-203ENST00000397378 SOCS7O14512 581 aa16.88■□□□□ 0.29
NEDD9-203ENST00000397378 ILDR2Q71H61 639 aa16.86■□□□□ 0.29
NEDD9-203ENST00000397378 DISP3Q9P2K9 1392 aa16.86■□□□□ 0.29
NEDD9-203ENST00000397378 IGF1RP08069 1367 aa16.85■□□□□ 0.29
NEDD9-203ENST00000397378 PTPRMP28827 1452 aa16.85■□□□□ 0.29
NEDD9-203ENST00000397378 IQGAP2Q13576 1575 aa16.84■□□□□ 0.29
NEDD9-203ENST00000397378 PCF11O94913 1555 aaKnown RBP16.83■□□□□ 0.28
NEDD9-203ENST00000397378 WDR7Q9Y4E6 1490 aa16.82■□□□□ 0.28
NEDD9-203ENST00000397378 CFAP43Q8NDM7 1665 aa16.81■□□□□ 0.28
NEDD9-203ENST00000397378 CD109Q6YHK3 1445 aa16.8■□□□□ 0.28
NEDD9-203ENST00000397378 ADAMTSL3P82987 1691 aa16.8■□□□□ 0.28
NEDD9-203ENST00000397378 MAGI3Q5TCQ9 1506 aa16.8■□□□□ 0.28
NEDD9-203ENST00000397378 KIF27Q86VH2 1401 aa16.79■□□□□ 0.28
NEDD9-203ENST00000397378 DISP1Q96F81 1524 aa16.78■□□□□ 0.28
NEDD9-203ENST00000397378 CARMIL1Q5VZK9 1371 aa16.75■□□□□ 0.27
NEDD9-203ENST00000397378 CERKQ8TCT0 537 aa16.74■□□□□ 0.27
NEDD9-203ENST00000397378 KCNH8Q96L42 1107 aa16.73■□□□□ 0.27
NEDD9-203ENST00000397378 MADDQ8WXG6 1647 aa16.72■□□□□ 0.27
NEDD9-203ENST00000397378 BCORL1Q5H9F3 1711 aa16.7■□□□□ 0.26
NEDD9-203ENST00000397378 KIAA0556O60303 1618 aa16.7■□□□□ 0.26
NEDD9-203ENST00000397378 HSPA2P54652 639 aa16.69■□□□□ 0.26
NEDD9-203ENST00000397378 ARAP3Q8WWN8 1544 aa16.69■□□□□ 0.26
NEDD9-203ENST00000397378 SPATA31D1Q6ZQQ2 1576 aa16.68■□□□□ 0.26
NEDD9-203ENST00000397378 UGGT2Q9NYU1 1516 aa16.67■□□□□ 0.26
NEDD9-203ENST00000397378 ARID4BQ4LE39 1312 aaPredicted RBP16.67■□□□□ 0.26
NEDD9-203ENST00000397378 RIMS1Q86UR5 1692 aaKnown RBP16.66■□□□□ 0.26
NEDD9-203ENST00000397378 PLPPR3Q6T4P5 718 aa16.63■□□□□ 0.25
NEDD9-203ENST00000397378 RAPGEF3O95398 923 aa16.59■□□□□ 0.25
NEDD9-203ENST00000397378 ABCA8O94911 1581 aa16.56■□□□□ 0.24
NEDD9-203ENST00000397378 PHLDB1Q86UU1 1377 aa16.55■□□□□ 0.24
NEDD9-203ENST00000397378 FRMPD1Q5SYB0 1578 aa16.53■□□□□ 0.24
NEDD9-203ENST00000397378 RAPGEF2Q9Y4G8 1499 aa16.52■□□□□ 0.23
NEDD9-203ENST00000397378 ABCA9Q8IUA7 1624 aa16.52■□□□□ 0.23
NEDD9-203ENST00000397378 ARHGEF40Q8TER5 1519 aa16.5■□□□□ 0.23
NEDD9-203ENST00000397378 ARID3CA6NKF2 412 aa16.5■□□□□ 0.23
NEDD9-203ENST00000397378 NEO1Q92859 1461 aa16.49■□□□□ 0.23
NEDD9-203ENST00000397378 GOLGA3Q08378 1498 aa16.48■□□□□ 0.23
NEDD9-203ENST00000397378 CTTNBP2Q8WZ74 1663 aa16.48■□□□□ 0.23
NEDD9-203ENST00000397378 POGZQ7Z3K3 1410 aa16.46■□□□□ 0.23
NEDD9-203ENST00000397378 FANCAO15360 1455 aa16.46■□□□□ 0.23
NEDD9-203ENST00000397378 FER1L4A9Z1Z3 1794 aa16.44■□□□□ 0.22
NEDD9-203ENST00000397378 PREX1Q8TCU6 1659 aa16.43■□□□□ 0.22
NEDD9-203ENST00000397378 RICTORQ6R327 1708 aa16.42■□□□□ 0.22
NEDD9-203ENST00000397378 ATP10BO94823 1461 aa16.42■□□□□ 0.22
NEDD9-203ENST00000397378 MLECQ14165 292 aa16.41■□□□□ 0.22
NEDD9-203ENST00000397378 DMRT2Q9Y5R5 561 aa16.41■□□□□ 0.22
NEDD9-203ENST00000397378 YEATS2Q9ULM3 1422 aa16.41■□□□□ 0.22
NEDD9-203ENST00000397378 TTC37Q6PGP7 1564 aa16.4■□□□□ 0.22
NEDD9-203ENST00000397378 AKNAQ7Z591 1439 aa16.4■□□□□ 0.22
NEDD9-203ENST00000397378 STRCQ7RTU9 1775 aa16.4■□□□□ 0.22
NEDD9-203ENST00000397378 SIGLEC1Q9BZZ2 1709 aa16.39■□□□□ 0.21
NEDD9-203ENST00000397378 FAM9AQ8IZU1 332 aaPredicted RBP16.39■□□□□ 0.21
NEDD9-203ENST00000397378 DENND4BO75064 1496 aaPredicted RBP16.39■□□□□ 0.21
NEDD9-203ENST00000397378 EFCAB5A4FU69 1503 aa16.35■□□□□ 0.21
NEDD9-203ENST00000397378 ZFYVE16Q7Z3T8 1539 aa16.35■□□□□ 0.21
NEDD9-203ENST00000397378 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.35■□□□□ 0.21
NEDD9-203ENST00000397378 HNRNPUL2Q1KMD3 747 aaKnown RBP16.35■□□□□ 0.21
NEDD9-203ENST00000397378 FHOD3Q2V2M9 1422 aa16.33■□□□□ 0.2
NEDD9-203ENST00000397378 CFAP74Q9C0B2 1584 aa16.33■□□□□ 0.2
NEDD9-203ENST00000397378 ZMYM4Q5VZL5 1548 aa16.32■□□□□ 0.2
NEDD9-203ENST00000397378 P3H3Q8IVL6 736 aa16.31■□□□□ 0.2
NEDD9-203ENST00000397378 UHRF1BP1Q6BDS2 1440 aa16.3■□□□□ 0.2
NEDD9-203ENST00000397378 CEBPAP49715 358 aaPredicted RBP16.3■□□□□ 0.2
NEDD9-203ENST00000397378 LTBP4Q8N2S1 1624 aa16.28■□□□□ 0.2
NEDD9-203ENST00000397378 RAPGEF6Q8TEU7 1601 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms