RNA–Protein interactions for RNA: ENST00000396625.3

COL4A4-201, Transcript of collagen type IV alpha 4 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A4, Length 9,895 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4-201ENST00000396625 FBLN2P98095 1184 aa13.5□□□□□ -0.25
COL4A4-201ENST00000396625 SCAF1Q9H7N4 1312 aaKnown RBP13.5□□□□□ -0.25
COL4A4-201ENST00000396625 MRS2Q9HD23 443 aa13.5□□□□□ -0.25
COL4A4-201ENST00000396625 LAS1LQ9Y4W2 734 aaKnown RBP13.49□□□□□ -0.25
COL4A4-201ENST00000396625 MSNP26038 577 aaKnown RBP13.48□□□□□ -0.25
COL4A4-201ENST00000396625 PPM1GO15355 546 aaPredicted RBP13.47□□□□□ -0.25
COL4A4-201ENST00000396625 DCAF1Q9Y4B6 1507 aa13.47□□□□□ -0.25
COL4A4-201ENST00000396625 CHGAP10645 457 aaKnown RBP13.46□□□□□ -0.25
COL4A4-201ENST00000396625 NCBP3Q53F19 620 aaKnown RBP13.45□□□□□ -0.26
COL4A4-201ENST00000396625 ARID4BQ4LE39 1312 aaPredicted RBP13.44□□□□□ -0.26
COL4A4-201ENST00000396625 TNNT3P45378 269 aaPredicted RBP13.43□□□□□ -0.26
COL4A4-201ENST00000396625 PLPPR3Q6T4P5 718 aa13.43□□□□□ -0.26
COL4A4-201ENST00000396625 FTSJ3Q8IY81 847 aaKnown RBP13.43□□□□□ -0.26
COL4A4-201ENST00000396625 NOP58Q9Y2X3 529 aaKnown RBP13.42□□□□□ -0.26
COL4A4-201ENST00000396625 CLSTN1O94985 981 aa13.42□□□□□ -0.26
COL4A4-201ENST00000396625 TAOK2Q9UL54 1235 aa13.42□□□□□ -0.26
COL4A4-201ENST00000396625 DRC7Q8IY82 874 aa13.41□□□□□ -0.26
COL4A4-201ENST00000396625 NOC3LQ8WTT2 800 aaKnown RBP13.41□□□□□ -0.26
COL4A4-201ENST00000396625 L1TD1Q5T7N2 865 aaKnown RBP13.41□□□□□ -0.26
COL4A4-201ENST00000396625 HSP90AB1P08238 724 aaKnown RBP13.4□□□□□ -0.26
COL4A4-201ENST00000396625 ARID3AQ99856 593 aa13.39□□□□□ -0.27
COL4A4-201ENST00000396625 P3H3Q8IVL6 736 aa13.37□□□□□ -0.27
COL4A4-201ENST00000396625 FGD1P98174 961 aa13.36□□□□□ -0.27
COL4A4-201ENST00000396625 KIAA2012Q0VF49 1180 aa13.36□□□□□ -0.27
COL4A4-201ENST00000396625 GOLGA6L4A6NEF3 574 aa13.35□□□□□ -0.27
COL4A4-201ENST00000396625 ZBTB7CA1YPR0 619 aa13.33□□□□□ -0.27
COL4A4-201ENST00000396625 NAP1L2Q9ULW6 460 aaPredicted RBP13.33□□□□□ -0.28
COL4A4-201ENST00000396625 CCDC180Q9P1Z9 1646 aa13.33□□□□□ -0.28
COL4A4-201ENST00000396625 PNNQ9H307 717 aaKnown RBP13.32□□□□□ -0.28
COL4A4-201ENST00000396625 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.31□□□□□ -0.28
COL4A4-201ENST00000396625 DEKP35659 375 aaKnown RBP13.31□□□□□ -0.28
COL4A4-201ENST00000396625 HSCBQ8IWL3 235 aa13.3□□□□□ -0.28
COL4A4-201ENST00000396625 C14orf37Q86TY3 774 aa13.3□□□□□ -0.28
COL4A4-201ENST00000396625 KCNJ4P48050 445 aa13.29□□□□□ -0.28
COL4A4-201ENST00000396625 GOLGA6L1Q8N7Z2 621 aa13.29□□□□□ -0.28
COL4A4-201ENST00000396625 CALRP27797 417 aaKnown RBP13.29□□□□□ -0.28
COL4A4-201ENST00000396625 RGS3P49796 1198 aa13.28□□□□□ -0.28
COL4A4-201ENST00000396625 MIER1Q8N108 512 aa13.28□□□□□ -0.28
COL4A4-201ENST00000396625 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.28□□□□□ -0.28
COL4A4-201ENST00000396625 KDM2AQ9Y2K7 1162 aa13.27□□□□□ -0.28
COL4A4-201ENST00000396625 A0A0U1RQG5 324 aaPredicted RBP13.27□□□□□ -0.29
COL4A4-201ENST00000396625 PLEKHG5O94827 1062 aa13.26□□□□□ -0.29
COL4A4-201ENST00000396625 OS9Q13438 667 aaPredicted RBP13.25□□□□□ -0.29
COL4A4-201ENST00000396625 SETQ01105 290 aaPredicted RBP13.24□□□□□ -0.29
COL4A4-201ENST00000396625 PRM3Q9NNZ6 103 aa13.24□□□□□ -0.29
COL4A4-201ENST00000396625 GNL2Q13823 731 aaKnown RBP13.24□□□□□ -0.29
COL4A4-201ENST00000396625 NPHP1O15259 732 aa13.23□□□□□ -0.29
COL4A4-201ENST00000396625 GOLGA2Q08379 1002 aa13.22□□□□□ -0.29
COL4A4-201ENST00000396625 CFAP53Q96M91 514 aa13.21□□□□□ -0.29
COL4A4-201ENST00000396625 SUPT16HQ9Y5B9 1047 aaKnown RBP13.21□□□□□ -0.29
COL4A4-201ENST00000396625 SPRYD3Q8NCJ5 442 aa13.2□□□□□ -0.3
COL4A4-201ENST00000396625 MCCP23508 829 aa13.2□□□□□ -0.3
COL4A4-201ENST00000396625 HIRIP3Q9BW71 556 aaPredicted RBP13.19□□□□□ -0.3
COL4A4-201ENST00000396625 CHMP4BQ9H444 224 aaKnown RBP13.19□□□□□ -0.3
COL4A4-201ENST00000396625 PTMSP20962 102 aa13.18□□□□□ -0.3
COL4A4-201ENST00000396625 USP35Q9P2H5 1018 aa13.17□□□□□ -0.3
COL4A4-201ENST00000396625 EIF4G2P78344 907 aaKnown RBP eCLIP13.17□□□□□ -0.3
COL4A4-201ENST00000396625 PPP4R2Q9NY27 417 aa13.17□□□□□ -0.3
COL4A4-201ENST00000396625 CHIC2Q9UKJ5 165 aa13.16□□□□□ -0.3
COL4A4-201ENST00000396625 SENP3-EIF4A1A0A087X0R7 540 aa13.16□□□□□ -0.3
COL4A4-201ENST00000396625 KNSTRNQ9Y448 316 aa13.16□□□□□ -0.3
COL4A4-201ENST00000396625 SENP3Q9H4L4 574 aaPredicted RBP13.16□□□□□ -0.3
COL4A4-201ENST00000396625 FRAT1Q92837 279 aaPredicted RBP13.15□□□□□ -0.31
COL4A4-201ENST00000396625 MAPK8IP3Q9UPT6 1336 aa13.14□□□□□ -0.31
COL4A4-201ENST00000396625 GBP4Q96PP9 640 aa13.14□□□□□ -0.31
COL4A4-201ENST00000396625 SYAP1Q96A49 352 aaPredicted RBP13.14□□□□□ -0.31
COL4A4-201ENST00000396625 HAP1P54257 671 aaPredicted RBP13.13□□□□□ -0.31
COL4A4-201ENST00000396625 PPP1R15AO75807 674 aaPredicted RBP13.13□□□□□ -0.31
COL4A4-201ENST00000396625 GZF1Q9H116 711 aaPredicted RBP13.13□□□□□ -0.31
COL4A4-201ENST00000396625 PDE4CQ08493 712 aa13.13□□□□□ -0.31
COL4A4-201ENST00000396625 ISY1Q9ULR0 285 aaKnown RBP13.12□□□□□ -0.31
COL4A4-201ENST00000396625 CSRNP3Q8WYN3 585 aa13.11□□□□□ -0.31
COL4A4-201ENST00000396625 HSP90AA2PQ14568 343 aaPredicted RBP13.11□□□□□ -0.31
COL4A4-201ENST00000396625 MS4A1P11836 297 aa13.11□□□□□ -0.31
COL4A4-201ENST00000396625 TPM4P67936 248 aa13.11□□□□□ -0.31
COL4A4-201ENST00000396625 NEUROD2Q15784 382 aa13.09□□□□□ -0.31
COL4A4-201ENST00000396625 PATL2C9JE40 543 aaKnown RBP13.06□□□□□ -0.32
COL4A4-201ENST00000396625 CDCA8Q53HL2 280 aa13.06□□□□□ -0.32
COL4A4-201ENST00000396625 B4GALNT3Q6L9W6 998 aa13.06□□□□□ -0.32
COL4A4-201ENST00000396625 KIAA1211Q6ZU35 1233 aa13.06□□□□□ -0.32
COL4A4-201ENST00000396625 HTATSF1O43719 755 aaKnown RBP13.06□□□□□ -0.32
COL4A4-201ENST00000396625 CFAP44Q96MT7 982 aa13.06□□□□□ -0.32
COL4A4-201ENST00000396625 SCRIBQ14160 1630 aa13.05□□□□□ -0.32
COL4A4-201ENST00000396625 MTUS2Q5JR59 1369 aa13.05□□□□□ -0.32
COL4A4-201ENST00000396625 GOLGA6L3A6NEY3 463 aa13.04□□□□□ -0.32
COL4A4-201ENST00000396625 NPM1P06748 294 aaKnown RBP eCLIP13.04□□□□□ -0.32
COL4A4-201ENST00000396625 PHF14O94880 888 aa13.03□□□□□ -0.32
COL4A4-201ENST00000396625 PABPN1Q86U42 306 aaKnown RBP eCLIP13.03□□□□□ -0.32
COL4A4-201ENST00000396625 KAT6BQ8WYB5 2073 aa13.03□□□□□ -0.32
COL4A4-201ENST00000396625 RSPH6AQ9H0K4 717 aa13.02□□□□□ -0.33
COL4A4-201ENST00000396625 TSPY4P0CV99 314 aa13.01□□□□□ -0.33
COL4A4-201ENST00000396625 TSPY10P0CW01 314 aa13.01□□□□□ -0.33
COL4A4-201ENST00000396625 TPM3P06753 285 aa13.01□□□□□ -0.33
COL4A4-201ENST00000396625 NUDCQ9Y266 331 aa13.01□□□□□ -0.33
COL4A4-201ENST00000396625 CCDC34Q96HJ3 373 aa13.01□□□□□ -0.33
COL4A4-201ENST00000396625 SLKQ9H2G2 1235 aaPredicted RBP13□□□□□ -0.33
COL4A4-201ENST00000396625 HSP90B1P14625 803 aaKnown RBP13□□□□□ -0.33
COL4A4-201ENST00000396625 ZNF771Q7L3S4 317 aaPredicted RBP13□□□□□ -0.33
COL4A4-201ENST00000396625 MYO15BQ96JP2 1530 aa12.99□□□□□ -0.33
COL4A4-201ENST00000396625 CEP89Q96ST8 783 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms