RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 TSPY10P0CW01 314 aa13.56□□□□□ -0.24
LIMCH1-203ENST00000396595 AMER1Q5JTC6 1135 aaPredicted RBP13.56□□□□□ -0.24
LIMCH1-203ENST00000396595 ERICH6BQ5W0A0 696 aa13.55□□□□□ -0.24
LIMCH1-203ENST00000396595 BECN1Q14457 450 aa13.55□□□□□ -0.24
LIMCH1-203ENST00000396595 KDM2AQ9Y2K7 1162 aa13.53□□□□□ -0.24
LIMCH1-203ENST00000396595 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.53□□□□□ -0.24
LIMCH1-203ENST00000396595 EEA1Q15075 1411 aa13.52□□□□□ -0.24
LIMCH1-203ENST00000396595 HIRIP3Q9BW71 556 aaPredicted RBP13.52□□□□□ -0.25
LIMCH1-203ENST00000396595 MYH16Q9H6N6 1097 aa13.52□□□□□ -0.25
LIMCH1-203ENST00000396595 RTN4Q9NQC3 1192 aaKnown RBP13.52□□□□□ -0.25
LIMCH1-203ENST00000396595 GOLGA3Q08378 1498 aa13.47□□□□□ -0.25
LIMCH1-203ENST00000396595 CEP162Q5TB80 1403 aa13.47□□□□□ -0.25
LIMCH1-203ENST00000396595 CCDC180Q9P1Z9 1646 aa13.47□□□□□ -0.25
LIMCH1-203ENST00000396595 NPM1P06748 294 aaKnown RBP eCLIP13.46□□□□□ -0.25
LIMCH1-203ENST00000396595 PPM1GO15355 546 aaPredicted RBP13.46□□□□□ -0.26
LIMCH1-203ENST00000396595 GOLGA6L22H0YM25 854 aa13.45□□□□□ -0.26
LIMCH1-203ENST00000396595 MYO15BQ96JP2 1530 aa13.45□□□□□ -0.26
LIMCH1-203ENST00000396595 RSF1Q96T23 1441 aaPredicted RBP13.45□□□□□ -0.26
LIMCH1-203ENST00000396595 RRP7BPQ9NSQ0 103 aa13.43□□□□□ -0.26
LIMCH1-203ENST00000396595 SUPT16HQ9Y5B9 1047 aaKnown RBP13.43□□□□□ -0.26
LIMCH1-203ENST00000396595 PPP4R2Q9NY27 417 aa13.41□□□□□ -0.26
LIMCH1-203ENST00000396595 CDCA8Q53HL2 280 aa13.38□□□□□ -0.27
LIMCH1-203ENST00000396595 TNIKQ9UKE5 1360 aa13.38□□□□□ -0.27
LIMCH1-203ENST00000396595 DNTTIP2Q5QJE6 756 aaKnown RBP13.37□□□□□ -0.27
LIMCH1-203ENST00000396595 CFAP53Q96M91 514 aa13.36□□□□□ -0.27
LIMCH1-203ENST00000396595 KNSTRNQ9Y448 316 aa13.34□□□□□ -0.27
LIMCH1-203ENST00000396595 NOP58Q9Y2X3 529 aaKnown RBP13.34□□□□□ -0.27
LIMCH1-203ENST00000396595 PTMAP06454 111 aaKnown RBP13.32□□□□□ -0.28
LIMCH1-203ENST00000396595 CEP164Q9UPV0 1460 aa13.31□□□□□ -0.28
LIMCH1-203ENST00000396595 CHMP7Q8WUX9 453 aaPredicted RBP13.31□□□□□ -0.28
LIMCH1-203ENST00000396595 CARD11Q9BXL7 1154 aa13.31□□□□□ -0.28
LIMCH1-203ENST00000396595 WRNQ14191 1432 aaPredicted RBP eCLIP13.3□□□□□ -0.28
LIMCH1-203ENST00000396595 CASC1Q6TDU7 716 aa13.3□□□□□ -0.28
LIMCH1-203ENST00000396595 PLEKHD1A6NEE1 506 aa13.3□□□□□ -0.28
LIMCH1-203ENST00000396595 RGL3Q3MIN7 710 aa13.3□□□□□ -0.28
LIMCH1-203ENST00000396595 FTSJ3Q8IY81 847 aaKnown RBP13.3□□□□□ -0.28
LIMCH1-203ENST00000396595 LAS1LQ9Y4W2 734 aaKnown RBP13.28□□□□□ -0.28
LIMCH1-203ENST00000396595 TNNT3P45378 269 aaPredicted RBP13.28□□□□□ -0.28
LIMCH1-203ENST00000396595 PLPPR3Q6T4P5 718 aa13.27□□□□□ -0.29
LIMCH1-203ENST00000396595 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.26□□□□□ -0.29
LIMCH1-203ENST00000396595 TIMELESSQ9UNS1 1208 aa13.26□□□□□ -0.29
LIMCH1-203ENST00000396595 KIF27Q86VH2 1401 aa13.26□□□□□ -0.29
LIMCH1-203ENST00000396595 ZRSR1Q15695 479 aaKnown RBP13.26□□□□□ -0.29
LIMCH1-203ENST00000396595 CFDP1Q9UEE9 299 aaPredicted RBP13.25□□□□□ -0.29
LIMCH1-203ENST00000396595 RGS3P49796 1198 aa13.25□□□□□ -0.29
LIMCH1-203ENST00000396595 SIN3AQ96ST3 1273 aa13.25□□□□□ -0.29
LIMCH1-203ENST00000396595 DEKP35659 375 aaKnown RBP13.25□□□□□ -0.29
LIMCH1-203ENST00000396595 SENP3-EIF4A1A0A087X0R7 540 aa13.24□□□□□ -0.29
LIMCH1-203ENST00000396595 CHMP4BQ9H444 224 aaKnown RBP13.24□□□□□ -0.29
LIMCH1-203ENST00000396595 CCER2I3L3R5 266 aa13.24□□□□□ -0.29
LIMCH1-203ENST00000396595 MS4A1P11836 297 aa13.24□□□□□ -0.29
LIMCH1-203ENST00000396595 MAPK8IP3Q9UPT6 1336 aa13.23□□□□□ -0.29
LIMCH1-203ENST00000396595 PPP1R15AO75807 674 aaPredicted RBP13.23□□□□□ -0.29
LIMCH1-203ENST00000396595 CALRP27797 417 aaKnown RBP13.23□□□□□ -0.29
LIMCH1-203ENST00000396595 B4GALNT3Q6L9W6 998 aa13.23□□□□□ -0.29
LIMCH1-203ENST00000396595 NUDCQ9Y266 331 aa13.23□□□□□ -0.29
LIMCH1-203ENST00000396595 CCNB3Q8WWL7 1395 aa13.2□□□□□ -0.3
LIMCH1-203ENST00000396595 NEUROD2Q15784 382 aa13.2□□□□□ -0.3
LIMCH1-203ENST00000396595 FRAT1Q92837 279 aaPredicted RBP13.18□□□□□ -0.3
LIMCH1-203ENST00000396595 HSP90AB1P08238 724 aaKnown RBP13.18□□□□□ -0.3
LIMCH1-203ENST00000396595 KCNH8Q96L42 1107 aa13.18□□□□□ -0.3
LIMCH1-203ENST00000396595 C14orf37Q86TY3 774 aa13.16□□□□□ -0.3
LIMCH1-203ENST00000396595 RBM19Q9Y4C8 960 aaKnown RBP13.16□□□□□ -0.3
LIMCH1-203ENST00000396595 L1TD1Q5T7N2 865 aaKnown RBP13.16□□□□□ -0.3
LIMCH1-203ENST00000396595 FHAD1B1AJZ9 1412 aa13.15□□□□□ -0.3
LIMCH1-203ENST00000396595 ARID4BQ4LE39 1312 aaPredicted RBP13.15□□□□□ -0.3
LIMCH1-203ENST00000396595 ZBTB7CA1YPR0 619 aa13.15□□□□□ -0.3
LIMCH1-203ENST00000396595 CHAF1AQ13111 956 aaPredicted RBP13.15□□□□□ -0.3
LIMCH1-203ENST00000396595 HSCBQ8IWL3 235 aa13.14□□□□□ -0.31
LIMCH1-203ENST00000396595 CC2D1BQ5T0F9 858 aaKnown RBP13.13□□□□□ -0.31
LIMCH1-203ENST00000396595 RB1CC1Q8TDY2 1594 aa13.13□□□□□ -0.31
LIMCH1-203ENST00000396595 TMF1P82094 1093 aa13.13□□□□□ -0.31
LIMCH1-203ENST00000396595 PNNQ9H307 717 aaKnown RBP13.13□□□□□ -0.31
LIMCH1-203ENST00000396595 VSIG10Q8N0Z9 540 aa13.12□□□□□ -0.31
LIMCH1-203ENST00000396595 BAZ1BQ9UIG0 1483 aaKnown RBP13.12□□□□□ -0.31
LIMCH1-203ENST00000396595 GOLGA6L6A8MZA4 724 aa13.12□□□□□ -0.31
LIMCH1-203ENST00000396595 MSNP26038 577 aaKnown RBP13.12□□□□□ -0.31
LIMCH1-203ENST00000396595 PLCB2Q00722 1185 aa13.11□□□□□ -0.31
LIMCH1-203ENST00000396595 NRDCO43847 1150 aa13.11□□□□□ -0.31
LIMCH1-203ENST00000396595 PTMSP20962 102 aa13.11□□□□□ -0.31
LIMCH1-203ENST00000396595 SENP3Q9H4L4 574 aaPredicted RBP13.11□□□□□ -0.31
LIMCH1-203ENST00000396595 TPRNQ4KMQ1 711 aa13.1□□□□□ -0.31
LIMCH1-203ENST00000396595 A0A0G2JS52 829 aa13.1□□□□□ -0.31
LIMCH1-203ENST00000396595 CFAP44Q96MT7 982 aa13.09□□□□□ -0.31
LIMCH1-203ENST00000396595 SETD5Q9C0A6 1442 aa13.09□□□□□ -0.31
LIMCH1-203ENST00000396595 POGKQ9P215 609 aa13.08□□□□□ -0.31
LIMCH1-203ENST00000396595 U2SURPO15042 1029 aaKnown RBP13.08□□□□□ -0.32
LIMCH1-203ENST00000396595 PODXL2Q9NZ53 605 aa13.07□□□□□ -0.32
LIMCH1-203ENST00000396595 HSPA5P11021 654 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-203ENST00000396595 DCAF11Q8TEB1 546 aa13.06□□□□□ -0.32
LIMCH1-203ENST00000396595 FGD1P98174 961 aa13.06□□□□□ -0.32
LIMCH1-203ENST00000396595 PLEKHG5O94827 1062 aa13.05□□□□□ -0.32
LIMCH1-203ENST00000396595 VPS8Q8N3P4 1428 aa13.05□□□□□ -0.32
LIMCH1-203ENST00000396595 TCERG1O14776 1098 aaKnown RBP13.05□□□□□ -0.32
LIMCH1-203ENST00000396595 KCNJ4P48050 445 aa13.05□□□□□ -0.32
LIMCH1-203ENST00000396595 OS9Q13438 667 aaPredicted RBP13.05□□□□□ -0.32
LIMCH1-203ENST00000396595 HSP90AA2PQ14568 343 aaPredicted RBP13.05□□□□□ -0.32
LIMCH1-203ENST00000396595 GOLGA6L4A6NEF3 574 aa13.04□□□□□ -0.32
LIMCH1-203ENST00000396595 ARID3AQ99856 593 aa13.04□□□□□ -0.32
LIMCH1-203ENST00000396595 MCCP23508 829 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms