RNA–Protein interactions for RNA: ENST00000394768.6

SYNE2-205, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 11,095 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-205ENST00000394768 HNRNPUQ00839 825 aaKnown RBP eCLIP9.71□□□□□ -0.85
SYNE2-205ENST00000394768 CFAP44Q96MT7 982 aa9.7□□□□□ -0.86
SYNE2-205ENST00000394768 PNNQ9H307 717 aaKnown RBP9.7□□□□□ -0.86
SYNE2-205ENST00000394768 ARID3CA6NKF2 412 aa9.69□□□□□ -0.86
SYNE2-205ENST00000394768 MS4A1P11836 297 aa9.68□□□□□ -0.86
SYNE2-205ENST00000394768 RSF1Q96T23 1441 aaPredicted RBP9.68□□□□□ -0.86
SYNE2-205ENST00000394768 PTMAP06454 111 aaKnown RBP9.68□□□□□ -0.86
SYNE2-205ENST00000394768 CSRNP3Q8WYN3 585 aa9.68□□□□□ -0.86
SYNE2-205ENST00000394768 MTUS2Q5JR59 1369 aa9.67□□□□□ -0.86
SYNE2-205ENST00000394768 P3H3Q8IVL6 736 aa9.67□□□□□ -0.86
SYNE2-205ENST00000394768 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.67□□□□□ -0.86
SYNE2-205ENST00000394768 CHAF1AQ13111 956 aaPredicted RBP9.66□□□□□ -0.86
SYNE2-205ENST00000394768 CHMP7Q8WUX9 453 aaPredicted RBP9.66□□□□□ -0.86
SYNE2-205ENST00000394768 FTSJ3Q8IY81 847 aaKnown RBP9.65□□□□□ -0.86
SYNE2-205ENST00000394768 HDGFP51858 240 aaKnown RBP9.65□□□□□ -0.86
SYNE2-205ENST00000394768 KIAA2012Q0VF49 1180 aa9.65□□□□□ -0.86
SYNE2-205ENST00000394768 FAM9BQ8IZU0 186 aa9.65□□□□□ -0.87
SYNE2-205ENST00000394768 ZBTB7CA1YPR0 619 aa9.64□□□□□ -0.87
SYNE2-205ENST00000394768 ARID4BQ4LE39 1312 aaPredicted RBP9.64□□□□□ -0.87
SYNE2-205ENST00000394768 TMX4Q9H1E5 349 aaPredicted RBP9.64□□□□□ -0.87
SYNE2-205ENST00000394768 DNTTIP2Q5QJE6 756 aaKnown RBP9.64□□□□□ -0.87
SYNE2-205ENST00000394768 NUDCQ9Y266 331 aa9.63□□□□□ -0.87
SYNE2-205ENST00000394768 FGD1P98174 961 aa9.63□□□□□ -0.87
SYNE2-205ENST00000394768 ARXQ96QS3 562 aa9.63□□□□□ -0.87
SYNE2-205ENST00000394768 MAPK8IP3Q9UPT6 1336 aa9.63□□□□□ -0.87
SYNE2-205ENST00000394768 CHMP4AQ9BY43 222 aa9.62□□□□□ -0.87
SYNE2-205ENST00000394768 FKBP8Q14318 412 aa9.62□□□□□ -0.87
SYNE2-205ENST00000394768 USP35Q9P2H5 1018 aa9.62□□□□□ -0.87
SYNE2-205ENST00000394768 KNSTRNQ9Y448 316 aa9.61□□□□□ -0.87
SYNE2-205ENST00000394768 MRS2Q9HD23 443 aa9.61□□□□□ -0.87
SYNE2-205ENST00000394768 CCDC180Q9P1Z9 1646 aa9.6□□□□□ -0.87
SYNE2-205ENST00000394768 CLSTN1O94985 981 aa9.6□□□□□ -0.87
SYNE2-205ENST00000394768 TULP1O00294 542 aaPredicted RBP9.6□□□□□ -0.87
SYNE2-205ENST00000394768 CCDC34Q96HJ3 373 aa9.6□□□□□ -0.87
SYNE2-205ENST00000394768 SCRIBQ14160 1630 aa9.59□□□□□ -0.87
SYNE2-205ENST00000394768 MCCP23508 829 aa9.59□□□□□ -0.87
SYNE2-205ENST00000394768 ERICH6BQ5W0A0 696 aa9.59□□□□□ -0.87
SYNE2-205ENST00000394768 OS9Q13438 667 aaPredicted RBP9.58□□□□□ -0.88
SYNE2-205ENST00000394768 KCNJ4P48050 445 aa9.57□□□□□ -0.88
SYNE2-205ENST00000394768 GOLGA6L4A6NEF3 574 aa9.57□□□□□ -0.88
SYNE2-205ENST00000394768 KANK1Q14678 1352 aa9.56□□□□□ -0.88
SYNE2-205ENST00000394768 PLEKHD1A6NEE1 506 aa9.56□□□□□ -0.88
SYNE2-205ENST00000394768 PTMSP20962 102 aa9.54□□□□□ -0.88
SYNE2-205ENST00000394768 SALL2Q9Y467 1007 aaPredicted RBP9.54□□□□□ -0.88
SYNE2-205ENST00000394768 KDM2AQ9Y2K7 1162 aa9.54□□□□□ -0.88
SYNE2-205ENST00000394768 HTATSF1O43719 755 aaKnown RBP9.54□□□□□ -0.88
SYNE2-205ENST00000394768 RB1CC1Q8TDY2 1594 aa9.54□□□□□ -0.88
SYNE2-205ENST00000394768 GNL2Q13823 731 aaKnown RBP9.53□□□□□ -0.88
SYNE2-205ENST00000394768 PPM1GO15355 546 aaPredicted RBP9.53□□□□□ -0.88
SYNE2-205ENST00000394768 HDAC5Q9UQL6 1122 aa9.53□□□□□ -0.88
SYNE2-205ENST00000394768 NOC3LQ8WTT2 800 aaKnown RBP9.53□□□□□ -0.88
SYNE2-205ENST00000394768 POGKQ9P215 609 aa9.52□□□□□ -0.88
SYNE2-205ENST00000394768 NBR1Q14596 966 aa9.52□□□□□ -0.89
SYNE2-205ENST00000394768 ANO8Q9HCE9 1232 aaPredicted RBP9.52□□□□□ -0.89
SYNE2-205ENST00000394768 EEA1Q15075 1411 aa9.51□□□□□ -0.89
SYNE2-205ENST00000394768 DDX10Q13206 875 aaKnown RBP9.5□□□□□ -0.89
SYNE2-205ENST00000394768 CALD1Q05682 793 aaKnown RBP9.49□□□□□ -0.89
SYNE2-205ENST00000394768 LMOD2Q6P5Q4 547 aa9.49□□□□□ -0.89
SYNE2-205ENST00000394768 PRM3Q9NNZ6 103 aa9.49□□□□□ -0.89
SYNE2-205ENST00000394768 CHIC2Q9UKJ5 165 aa9.49□□□□□ -0.89
SYNE2-205ENST00000394768 CLIP1P30622 1438 aa9.49□□□□□ -0.89
SYNE2-205ENST00000394768 ERCC6Q03468 1493 aa9.49□□□□□ -0.89
SYNE2-205ENST00000394768 KRI1Q8N9T8 703 aaKnown RBP9.49□□□□□ -0.89
SYNE2-205ENST00000394768 HSP90AB1P08238 724 aaKnown RBP9.48□□□□□ -0.89
SYNE2-205ENST00000394768 TPM4P67936 248 aa9.48□□□□□ -0.89
SYNE2-205ENST00000394768 NAP1L2Q9ULW6 460 aaPredicted RBP9.48□□□□□ -0.89
SYNE2-205ENST00000394768 NCBP3Q53F19 620 aaKnown RBP9.48□□□□□ -0.89
SYNE2-205ENST00000394768 ISY1Q9ULR0 285 aaKnown RBP9.47□□□□□ -0.89
SYNE2-205ENST00000394768 DCAF1Q9Y4B6 1507 aa9.47□□□□□ -0.89
SYNE2-205ENST00000394768 HSCBQ8IWL3 235 aa9.46□□□□□ -0.9
SYNE2-205ENST00000394768 KIAA1211Q6ZU35 1233 aa9.46□□□□□ -0.9
SYNE2-205ENST00000394768 MSNP26038 577 aaKnown RBP9.45□□□□□ -0.9
SYNE2-205ENST00000394768 PLEKHG5O94827 1062 aa9.45□□□□□ -0.9
SYNE2-205ENST00000394768 GPATCH3Q96I76 525 aa9.45□□□□□ -0.9
SYNE2-205ENST00000394768 SYAP1Q96A49 352 aaPredicted RBP9.45□□□□□ -0.9
SYNE2-205ENST00000394768 RTF1Q92541 710 aaKnown RBP9.45□□□□□ -0.9
SYNE2-205ENST00000394768 CEP89Q96ST8 783 aa9.44□□□□□ -0.9
SYNE2-205ENST00000394768 PLCB2Q00722 1185 aa9.44□□□□□ -0.9
SYNE2-205ENST00000394768 DRC7Q8IY82 874 aa9.44□□□□□ -0.9
SYNE2-205ENST00000394768 GOLGA6L1Q8N7Z2 621 aa9.44□□□□□ -0.9
SYNE2-205ENST00000394768 CHMP4CQ96CF2 233 aa9.44□□□□□ -0.9
SYNE2-205ENST00000394768 CFDP1Q9UEE9 299 aaPredicted RBP9.43□□□□□ -0.9
SYNE2-205ENST00000394768 KCNH8Q96L42 1107 aa9.43□□□□□ -0.9
SYNE2-205ENST00000394768 LAS1LQ9Y4W2 734 aaKnown RBP9.43□□□□□ -0.9
SYNE2-205ENST00000394768 A0A0U1RQG5 324 aaPredicted RBP9.42□□□□□ -0.9
SYNE2-205ENST00000394768 CSPP1Q1MSJ5 1256 aa9.42□□□□□ -0.9
SYNE2-205ENST00000394768 IPO8O15397 1037 aaKnown RBP9.42□□□□□ -0.9
SYNE2-205ENST00000394768 GOLGA3Q08378 1498 aa9.42□□□□□ -0.9
SYNE2-205ENST00000394768 KIF3AQ9Y496 699 aa9.41□□□□□ -0.9
SYNE2-205ENST00000394768 CARD11Q9BXL7 1154 aa9.41□□□□□ -0.9
SYNE2-205ENST00000394768 EIF3AQ14152 1382 aaKnown RBP9.4□□□□□ -0.9
SYNE2-205ENST00000394768 FHAD1B1AJZ9 1412 aa9.4□□□□□ -0.9
SYNE2-205ENST00000394768 G3V3G9 751 aa9.4□□□□□ -0.9
SYNE2-205ENST00000394768 DCAF8Q5TAQ9 597 aa9.4□□□□□ -0.9
SYNE2-205ENST00000394768 SPAG9O60271 1321 aaKnown RBP9.39□□□□□ -0.91
SYNE2-205ENST00000394768 ZCCHC6Q5VYS8 1495 aaKnown RBP9.39□□□□□ -0.91
SYNE2-205ENST00000394768 NAP1L5Q96NT1 182 aaPredicted RBP9.39□□□□□ -0.91
SYNE2-205ENST00000394768 KIF27Q86VH2 1401 aa9.38□□□□□ -0.91
SYNE2-205ENST00000394768 TMF1P82094 1093 aa9.38□□□□□ -0.91
SYNE2-205ENST00000394768 CEP162Q5TB80 1403 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms