RNA–Protein interactions for RNA: ENST00000394573.5

SLC28A1-203, Transcript of solute carrier family 28 member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SLC28A1, Length 2,769 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1-203ENST00000394573 SIN3AQ96ST3 1273 aa17.14■□□□□ 0.33
SLC28A1-203ENST00000394573 RSF1Q96T23 1441 aaPredicted RBP17.14■□□□□ 0.33
SLC28A1-203ENST00000394573 NACADO15069 1562 aa17.11■□□□□ 0.33
SLC28A1-203ENST00000394573 CCER2I3L3R5 266 aa17.09■□□□□ 0.33
SLC28A1-203ENST00000394573 PPP1R15AO75807 674 aaPredicted RBP17.09■□□□□ 0.33
SLC28A1-203ENST00000394573 GSE1Q14687 1217 aa17.08■□□□□ 0.33
SLC28A1-203ENST00000394573 BAZ1BQ9UIG0 1483 aaKnown RBP17.07■□□□□ 0.32
SLC28A1-203ENST00000394573 FRAT1Q92837 279 aaPredicted RBP17.06■□□□□ 0.32
SLC28A1-203ENST00000394573 RBM10P98175 930 aaKnown RBP17.06■□□□□ 0.32
SLC28A1-203ENST00000394573 USP35Q9P2H5 1018 aa17.03■□□□□ 0.32
SLC28A1-203ENST00000394573 RANGAP1P46060 587 aaPredicted RBP17.03■□□□□ 0.32
SLC28A1-203ENST00000394573 TNIKQ9UKE5 1360 aa17.02■□□□□ 0.31
SLC28A1-203ENST00000394573 HSP90AA2PQ14568 343 aaPredicted RBP17■□□□□ 0.31
SLC28A1-203ENST00000394573 DCAF11Q8TEB1 546 aa16.99■□□□□ 0.31
SLC28A1-203ENST00000394573 ABCC9O60706 1549 aa16.99■□□□□ 0.31
SLC28A1-203ENST00000394573 FAM43AQ8N2R8 423 aa16.99■□□□□ 0.31
SLC28A1-203ENST00000394573 AEBP2Q6ZN18 517 aaPredicted RBP16.97■□□□□ 0.31
SLC28A1-203ENST00000394573 PDE4CQ08493 712 aa16.96■□□□□ 0.31
SLC28A1-203ENST00000394573 AAMPQ13685 434 aa16.96■□□□□ 0.31
SLC28A1-203ENST00000394573 FGD1P98174 961 aa16.94■□□□□ 0.3
SLC28A1-203ENST00000394573 NAP1L5Q96NT1 182 aaPredicted RBP16.94■□□□□ 0.3
SLC28A1-203ENST00000394573 PPM1GO15355 546 aaPredicted RBP16.93■□□□□ 0.3
SLC28A1-203ENST00000394573 ABCC8Q09428 1581 aa16.92■□□□□ 0.3
SLC28A1-203ENST00000394573 RRAGDQ9NQL2 400 aaPredicted RBP16.92■□□□□ 0.3
SLC28A1-203ENST00000394573 ARID4BQ4LE39 1312 aaPredicted RBP16.92■□□□□ 0.3
SLC28A1-203ENST00000394573 SOGA1O94964 1423 aa16.9■□□□□ 0.3
SLC28A1-203ENST00000394573 NFKBIBQ15653 356 aa16.9■□□□□ 0.3
SLC28A1-203ENST00000394573 SLC4A3P48751 1232 aa16.89■□□□□ 0.29
SLC28A1-203ENST00000394573 BCL11BQ9C0K0 894 aaPredicted RBP16.87■□□□□ 0.29
SLC28A1-203ENST00000394573 WDR97A6NE52 1622 aa16.86■□□□□ 0.29
SLC28A1-203ENST00000394573 HSP90AA1P07900 732 aaKnown RBP16.86■□□□□ 0.29
SLC28A1-203ENST00000394573 CCDC88BA6NC98 1476 aa16.85■□□□□ 0.29
SLC28A1-203ENST00000394573 SENP3-EIF4A1A0A087X0R7 540 aa16.84■□□□□ 0.29
SLC28A1-203ENST00000394573 FAM9BQ8IZU0 186 aa16.84■□□□□ 0.29
SLC28A1-203ENST00000394573 CCDC184Q52MB2 194 aa16.83■□□□□ 0.29
SLC28A1-203ENST00000394573 EEA1Q15075 1411 aa16.83■□□□□ 0.29
SLC28A1-203ENST00000394573 RRP9O43818 475 aaKnown RBP16.82■□□□□ 0.28
SLC28A1-203ENST00000394573 ARXQ96QS3 562 aa16.81■□□□□ 0.28
SLC28A1-203ENST00000394573 RUSC2Q8N2Y8 1516 aa16.8■□□□□ 0.28
SLC28A1-203ENST00000394573 RGS3P49796 1198 aa16.77■□□□□ 0.28
SLC28A1-203ENST00000394573 CLIP1P30622 1438 aa16.77■□□□□ 0.27
SLC28A1-203ENST00000394573 PDE4AP27815 886 aa16.76■□□□□ 0.27
SLC28A1-203ENST00000394573 AKNAQ7Z591 1439 aa16.76■□□□□ 0.27
SLC28A1-203ENST00000394573 FRAT2O75474 233 aaPredicted RBP16.76■□□□□ 0.27
SLC28A1-203ENST00000394573 PDIA4P13667 645 aaKnown RBP16.75■□□□□ 0.27
SLC28A1-203ENST00000394573 PNNQ9H307 717 aaKnown RBP16.73■□□□□ 0.27
SLC28A1-203ENST00000394573 SKAP1Q86WV1 359 aa16.7■□□□□ 0.26
SLC28A1-203ENST00000394573 VPS8Q8N3P4 1428 aa16.69■□□□□ 0.26
SLC28A1-203ENST00000394573 KANK4Q5T7N3 995 aaPredicted RBP16.68■□□□□ 0.26
SLC28A1-203ENST00000394573 GOLGA3Q08378 1498 aa16.68■□□□□ 0.26
SLC28A1-203ENST00000394573 MAPKBP1O60336 1514 aa16.68■□□□□ 0.26
SLC28A1-203ENST00000394573 BACH2Q9BYV9 841 aa16.66■□□□□ 0.26
SLC28A1-203ENST00000394573 PRDM4Q9UKN5 801 aa16.66■□□□□ 0.26
SLC28A1-203ENST00000394573 CNGB1Q14028 1251 aaPredicted RBP16.65■□□□□ 0.26
SLC28A1-203ENST00000394573 RAB3GAP2Q9H2M9 1393 aa16.64■□□□□ 0.25
SLC28A1-203ENST00000394573 POGKQ9P215 609 aa16.64■□□□□ 0.25
SLC28A1-203ENST00000394573 MRS2Q9HD23 443 aa16.63■□□□□ 0.25
SLC28A1-203ENST00000394573 ZBED9Q6R2W3 1325 aa16.61■□□□□ 0.25
SLC28A1-203ENST00000394573 TCERG1O14776 1098 aaKnown RBP16.59■□□□□ 0.25
SLC28A1-203ENST00000394573 DDRGK1Q96HY6 314 aa16.58■□□□□ 0.25
SLC28A1-203ENST00000394573 NCAPD3P42695 1498 aa16.56■□□□□ 0.24
SLC28A1-203ENST00000394573 BBXQ8WY36 941 aaPredicted RBP16.55■□□□□ 0.24
SLC28A1-203ENST00000394573 EXOC6Q8TAG9 804 aa16.54■□□□□ 0.24
SLC28A1-203ENST00000394573 ARID3AQ99856 593 aa16.54■□□□□ 0.24
SLC28A1-203ENST00000394573 CHMP4BQ9H444 224 aaKnown RBP16.53■□□□□ 0.24
SLC28A1-203ENST00000394573 CALD1Q05682 793 aaKnown RBP16.53■□□□□ 0.24
SLC28A1-203ENST00000394573 CLCN1P35523 988 aa16.52■□□□□ 0.24
SLC28A1-203ENST00000394573 PANK2Q9BZ23 570 aa16.52■□□□□ 0.23
SLC28A1-203ENST00000394573 ZHX1Q9UKY1 873 aaPredicted RBP16.5■□□□□ 0.23
SLC28A1-203ENST00000394573 NUDCQ9Y266 331 aa16.49■□□□□ 0.23
SLC28A1-203ENST00000394573 PEG3Q9GZU2 1588 aa16.48■□□□□ 0.23
SLC28A1-203ENST00000394573 PDCL3Q9H2J4 239 aa16.48■□□□□ 0.23
SLC28A1-203ENST00000394573 NAP1L2Q9ULW6 460 aaPredicted RBP16.47■□□□□ 0.23
SLC28A1-203ENST00000394573 CCNB3Q8WWL7 1395 aa16.47■□□□□ 0.23
SLC28A1-203ENST00000394573 SCRIBQ14160 1630 aa16.47■□□□□ 0.23
SLC28A1-203ENST00000394573 CECR2Q9BXF3 1484 aa16.47■□□□□ 0.23
SLC28A1-203ENST00000394573 CEP164Q9UPV0 1460 aa16.46■□□□□ 0.23
SLC28A1-203ENST00000394573 PAXIP1Q6ZW49 1069 aaPredicted RBP16.46■□□□□ 0.23
SLC28A1-203ENST00000394573 XRCC6P12956 609 aaKnown RBP eCLIP16.45■□□□□ 0.22
SLC28A1-203ENST00000394573 EIF4G1Q04637 1599 aaKnown RBP16.45■□□□□ 0.22
SLC28A1-203ENST00000394573 CUX2O14529 1486 aa16.44■□□□□ 0.22
SLC28A1-203ENST00000394573 SMG6Q86US8 1419 aaKnown RBP16.44■□□□□ 0.22
SLC28A1-203ENST00000394573 PRKRIP1Q9H875 184 aaPredicted RBP16.44■□□□□ 0.22
SLC28A1-203ENST00000394573 GTF2E1P29083 439 aaPredicted RBP16.43■□□□□ 0.22
SLC28A1-203ENST00000394573 L1TD1Q5T7N2 865 aaKnown RBP16.43■□□□□ 0.22
SLC28A1-203ENST00000394573 GZF1Q9H116 711 aaPredicted RBP16.43■□□□□ 0.22
SLC28A1-203ENST00000394573 RNF123Q5XPI4 1314 aa16.43■□□□□ 0.22
SLC28A1-203ENST00000394573 RRBP1Q9P2E9 1410 aaKnown RBP16.43■□□□□ 0.22
SLC28A1-203ENST00000394573 PRDM10Q9NQV6 1147 aa16.43■□□□□ 0.22
SLC28A1-203ENST00000394573 MS4A1P11836 297 aa16.42■□□□□ 0.22
SLC28A1-203ENST00000394573 KIF21BO75037 1637 aa16.42■□□□□ 0.22
SLC28A1-203ENST00000394573 WIZO95785 1651 aa16.42■□□□□ 0.22
SLC28A1-203ENST00000394573 MROH2BQ7Z745 1585 aa16.41■□□□□ 0.22
SLC28A1-203ENST00000394573 TONSLQ96HA7 1378 aa16.4■□□□□ 0.22
SLC28A1-203ENST00000394573 ERBB4Q15303 1308 aa16.39■□□□□ 0.21
SLC28A1-203ENST00000394573 SLKQ9H2G2 1235 aaPredicted RBP16.38■□□□□ 0.21
SLC28A1-203ENST00000394573 HSPA5P11021 654 aaKnown RBP16.37■□□□□ 0.21
SLC28A1-203ENST00000394573 SETD5Q9C0A6 1442 aa16.37■□□□□ 0.21
SLC28A1-203ENST00000394573 CENPJQ9HC77 1338 aaPredicted RBP16.36■□□□□ 0.21
SLC28A1-203ENST00000394573 SMARCA2P51531 1590 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms