RNA–Protein interactions for RNA: ENST00000381867.5

SNPH-201, Transcript of syntaphilin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SNPH, Length 5,533 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNPH-201ENST00000381867 BCL11AQ9H165 835 aa18.97■□□□□ 0.63
SNPH-201ENST00000381867 WIZO95785 1651 aa18.96■□□□□ 0.63
SNPH-201ENST00000381867 PLPPR3Q6T4P5 718 aa18.96■□□□□ 0.63
SNPH-201ENST00000381867 CARMIL1Q5VZK9 1371 aa18.94■□□□□ 0.62
SNPH-201ENST00000381867 FHAD1B1AJZ9 1412 aa18.93■□□□□ 0.62
SNPH-201ENST00000381867 STAG3Q9UJ98 1225 aa18.9■□□□□ 0.62
SNPH-201ENST00000381867 UPF2Q9HAU5 1272 aaKnown RBP18.89■□□□□ 0.61
SNPH-201ENST00000381867 TONSLQ96HA7 1378 aa18.89■□□□□ 0.61
SNPH-201ENST00000381867 ABCC8Q09428 1581 aa18.89■□□□□ 0.61
SNPH-201ENST00000381867 HNRNPUQ00839 825 aaKnown RBP eCLIP18.89■□□□□ 0.61
SNPH-201ENST00000381867 HSP90AA1P07900 732 aaKnown RBP18.88■□□□□ 0.61
SNPH-201ENST00000381867 SOGA1O94964 1423 aa18.87■□□□□ 0.61
SNPH-201ENST00000381867 CHGAP10645 457 aaKnown RBP18.86■□□□□ 0.61
SNPH-201ENST00000381867 NBR1Q14596 966 aa18.84■□□□□ 0.61
SNPH-201ENST00000381867 SCAF1Q9H7N4 1312 aaKnown RBP18.83■□□□□ 0.61
SNPH-201ENST00000381867 CARMIL2Q6F5E8 1435 aa18.79■□□□□ 0.6
SNPH-201ENST00000381867 CCDC136Q96JN2 1154 aa18.78■□□□□ 0.6
SNPH-201ENST00000381867 NCAPD3P42695 1498 aa18.77■□□□□ 0.6
SNPH-201ENST00000381867 DDX10Q13206 875 aaKnown RBP18.77■□□□□ 0.59
SNPH-201ENST00000381867 EIF4G1Q04637 1599 aaKnown RBP18.76■□□□□ 0.59
SNPH-201ENST00000381867 FAM9BQ8IZU0 186 aa18.76■□□□□ 0.59
SNPH-201ENST00000381867 CHIC2Q9UKJ5 165 aa18.75■□□□□ 0.59
SNPH-201ENST00000381867 CFDP1Q9UEE9 299 aaPredicted RBP18.73■□□□□ 0.59
SNPH-201ENST00000381867 KCNH8Q96L42 1107 aa18.71■□□□□ 0.59
SNPH-201ENST00000381867 FANCD2Q9BXW9 1451 aa18.71■□□□□ 0.59
SNPH-201ENST00000381867 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.68■□□□□ 0.58
SNPH-201ENST00000381867 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.67■□□□□ 0.58
SNPH-201ENST00000381867 FMN1Q68DA7 1419 aa18.66■□□□□ 0.58
SNPH-201ENST00000381867 CCNB3Q8WWL7 1395 aa18.65■□□□□ 0.58
SNPH-201ENST00000381867 RAPGEF2Q9Y4G8 1499 aa18.64■□□□□ 0.58
SNPH-201ENST00000381867 TDRD9Q8NDG6 1382 aaKnown RBP18.64■□□□□ 0.57
SNPH-201ENST00000381867 ARXQ96QS3 562 aa18.63■□□□□ 0.57
SNPH-201ENST00000381867 VPS8Q8N3P4 1428 aa18.62■□□□□ 0.57
SNPH-201ENST00000381867 TMC1Q8TDI8 760 aa18.61■□□□□ 0.57
SNPH-201ENST00000381867 MIER1Q8N108 512 aa18.61■□□□□ 0.57
SNPH-201ENST00000381867 SALL2Q9Y467 1007 aaPredicted RBP18.6■□□□□ 0.57
SNPH-201ENST00000381867 ANP32EQ9BTT0 268 aa18.58■□□□□ 0.57
SNPH-201ENST00000381867 MRS2Q9HD23 443 aa18.57■□□□□ 0.56
SNPH-201ENST00000381867 RRP7BPQ9NSQ0 103 aa18.57■□□□□ 0.56
SNPH-201ENST00000381867 DDRGK1Q96HY6 314 aa18.55■□□□□ 0.56
SNPH-201ENST00000381867 HMGXB3Q12766 1538 aa18.55■□□□□ 0.56
SNPH-201ENST00000381867 IRX6P78412 446 aaPredicted RBP18.54■□□□□ 0.56
SNPH-201ENST00000381867 ARHGAP35Q9NRY4 1499 aa18.51■□□□□ 0.55
SNPH-201ENST00000381867 WDR43Q15061 677 aaKnown RBP eCLIP18.5■□□□□ 0.55
SNPH-201ENST00000381867 BECN1Q14457 450 aa18.48■□□□□ 0.55
SNPH-201ENST00000381867 TRIM44Q96DX7 344 aaPredicted RBP18.47■□□□□ 0.55
SNPH-201ENST00000381867 KANK1Q14678 1352 aa18.46■□□□□ 0.55
SNPH-201ENST00000381867 A0A0G2JS52 829 aa18.45■□□□□ 0.54
SNPH-201ENST00000381867 PPP1R15AO75807 674 aaPredicted RBP18.43■□□□□ 0.54
SNPH-201ENST00000381867 FGD5Q6ZNL6 1462 aa18.42■□□□□ 0.54
SNPH-201ENST00000381867 EIF4G2P78344 907 aaKnown RBP eCLIP18.42■□□□□ 0.54
SNPH-201ENST00000381867 KDM2AQ9Y2K7 1162 aa18.41■□□□□ 0.54
SNPH-201ENST00000381867 ARID4BQ4LE39 1312 aaPredicted RBP18.4■□□□□ 0.54
SNPH-201ENST00000381867 CFTRP13569 1480 aa18.4■□□□□ 0.54
SNPH-201ENST00000381867 CDCA8Q53HL2 280 aa18.39■□□□□ 0.54
SNPH-201ENST00000381867 GAPVD1Q14C86 1478 aa18.39■□□□□ 0.54
SNPH-201ENST00000381867 CC2D2AQ9P2K1 1620 aa18.39■□□□□ 0.53
SNPH-201ENST00000381867 PPM1GO15355 546 aaPredicted RBP18.38■□□□□ 0.53
SNPH-201ENST00000381867 TNNT2P45379 298 aaPredicted RBP18.38■□□□□ 0.53
SNPH-201ENST00000381867 MYH16Q9H6N6 1097 aa18.38■□□□□ 0.53
SNPH-201ENST00000381867 PLEKHG5O94827 1062 aa18.37■□□□□ 0.53
SNPH-201ENST00000381867 SENP3Q9H4L4 574 aaPredicted RBP18.37■□□□□ 0.53
SNPH-201ENST00000381867 CCDC18Q5T9S5 1454 aa18.37■□□□□ 0.53
SNPH-201ENST00000381867 GOLGA6L22H0YM25 854 aa18.37■□□□□ 0.53
SNPH-201ENST00000381867 EFCAB2Q5VUJ9 269 aa18.37■□□□□ 0.53
SNPH-201ENST00000381867 ERICH6BQ5W0A0 696 aa18.36■□□□□ 0.53
SNPH-201ENST00000381867 JPH4Q96JJ6 628 aa18.36■□□□□ 0.53
SNPH-201ENST00000381867 TIMELESSQ9UNS1 1208 aa18.36■□□□□ 0.53
SNPH-201ENST00000381867 ZBTB7CA1YPR0 619 aa18.35■□□□□ 0.53
SNPH-201ENST00000381867 RSPH4AQ5TD94 716 aa18.35■□□□□ 0.53
SNPH-201ENST00000381867 C14orf37Q86TY3 774 aa18.35■□□□□ 0.53
SNPH-201ENST00000381867 NCLP19338 710 aaKnown RBP18.34■□□□□ 0.53
SNPH-201ENST00000381867 MRC2Q9UBG0 1479 aa18.31■□□□□ 0.52
SNPH-201ENST00000381867 HIRIP3Q9BW71 556 aaPredicted RBP18.3■□□□□ 0.52
SNPH-201ENST00000381867 HDGFP51858 240 aaKnown RBP18.3■□□□□ 0.52
SNPH-201ENST00000381867 SETD5Q9C0A6 1442 aa18.29■□□□□ 0.52
SNPH-201ENST00000381867 FHOD3Q2V2M9 1422 aa18.29■□□□□ 0.52
SNPH-201ENST00000381867 BICRAQ9NZM4 1560 aa18.28■□□□□ 0.52
SNPH-201ENST00000381867 ANKRD30AQ9BXX3 1397 aa18.27■□□□□ 0.52
SNPH-201ENST00000381867 IGF1RP08069 1367 aa18.26■□□□□ 0.51
SNPH-201ENST00000381867 PTMAP06454 111 aaKnown RBP18.25■□□□□ 0.51
SNPH-201ENST00000381867 SUPT16HQ9Y5B9 1047 aaKnown RBP18.25■□□□□ 0.51
SNPH-201ENST00000381867 GRIN2BQ13224 1484 aa18.25■□□□□ 0.51
SNPH-201ENST00000381867 NOP58Q9Y2X3 529 aaKnown RBP18.24■□□□□ 0.51
SNPH-201ENST00000381867 PTPRGP23470 1445 aa18.24■□□□□ 0.51
SNPH-201ENST00000381867 NAP1L5Q96NT1 182 aaPredicted RBP18.24■□□□□ 0.51
SNPH-201ENST00000381867 IFT140Q96RY7 1462 aa18.24■□□□□ 0.51
SNPH-201ENST00000381867 HAP1P54257 671 aaPredicted RBP18.23■□□□□ 0.51
SNPH-201ENST00000381867 OSCARQ8IYS5 282 aa18.23■□□□□ 0.51
SNPH-201ENST00000381867 TRHP20396 242 aaPredicted RBP18.22■□□□□ 0.51
SNPH-201ENST00000381867 PPP4R2Q9NY27 417 aa18.22■□□□□ 0.51
SNPH-201ENST00000381867 RGL3Q3MIN7 710 aa18.22■□□□□ 0.51
SNPH-201ENST00000381867 CDK11BP21127 795 aaKnown RBP18.21■□□□□ 0.51
SNPH-201ENST00000381867 RAD54L2Q9Y4B4 1467 aa18.21■□□□□ 0.51
SNPH-201ENST00000381867 RTN4Q9NQC3 1192 aaKnown RBP18.21■□□□□ 0.51
SNPH-201ENST00000381867 LAS1LQ9Y4W2 734 aaKnown RBP18.2■□□□□ 0.5
SNPH-201ENST00000381867 DNTTIP2Q5QJE6 756 aaKnown RBP18.19■□□□□ 0.5
SNPH-201ENST00000381867 CARD11Q9BXL7 1154 aa18.19■□□□□ 0.5
SNPH-201ENST00000381867 ERICH3Q5RHP9 1530 aa18.18■□□□□ 0.5
SNPH-201ENST00000381867 KANK4Q5T7N3 995 aaPredicted RBP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms