RNA–Protein interactions for RNA: ENST00000381431.9

SGCB-201, Transcript of sarcoglycan beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SGCB, Length 4,431 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCB-201ENST00000381431 CEP164Q9UPV0 1460 aa23.18■■□□□ 1.3
SGCB-201ENST00000381431 CHMP7Q8WUX9 453 aaPredicted RBP23.16■■□□□ 1.3
SGCB-201ENST00000381431 NACADO15069 1562 aa23.16■■□□□ 1.3
SGCB-201ENST00000381431 BAZ1BQ9UIG0 1483 aaKnown RBP23.15■■□□□ 1.3
SGCB-201ENST00000381431 KIF27Q86VH2 1401 aa23.13■■□□□ 1.29
SGCB-201ENST00000381431 NBR1Q14596 966 aa23.08■■□□□ 1.29
SGCB-201ENST00000381431 BAZ1AQ9NRL2 1556 aaPredicted RBP23.06■■□□□ 1.28
SGCB-201ENST00000381431 RGL3Q3MIN7 710 aa23.06■■□□□ 1.28
SGCB-201ENST00000381431 SUPT16HQ9Y5B9 1047 aaKnown RBP23.04■■□□□ 1.28
SGCB-201ENST00000381431 MROH2BQ7Z745 1585 aa23.03■■□□□ 1.28
SGCB-201ENST00000381431 STAG3Q9UJ98 1225 aa23■■□□□ 1.27
SGCB-201ENST00000381431 WDR43Q15061 677 aaKnown RBP eCLIP23■■□□□ 1.27
SGCB-201ENST00000381431 KANK4Q5T7N3 995 aaPredicted RBP22.99■■□□□ 1.27
SGCB-201ENST00000381431 KCNH8Q96L42 1107 aa22.99■■□□□ 1.27
SGCB-201ENST00000381431 SENP3Q9H4L4 574 aaPredicted RBP22.98■■□□□ 1.27
SGCB-201ENST00000381431 CCNB3Q8WWL7 1395 aa22.98■■□□□ 1.27
SGCB-201ENST00000381431 CCDC88BA6NC98 1476 aa22.97■■□□□ 1.27
SGCB-201ENST00000381431 PLEKHD1A6NEE1 506 aa22.96■■□□□ 1.27
SGCB-201ENST00000381431 CFDP1Q9UEE9 299 aaPredicted RBP22.96■■□□□ 1.27
SGCB-201ENST00000381431 NPM1P06748 294 aaKnown RBP eCLIP22.96■■□□□ 1.27
SGCB-201ENST00000381431 ABCC8Q09428 1581 aa22.95■■□□□ 1.26
SGCB-201ENST00000381431 PLPPR3Q6T4P5 718 aa22.92■■□□□ 1.26
SGCB-201ENST00000381431 ESF1Q9H501 851 aaKnown RBP22.9■■□□□ 1.26
SGCB-201ENST00000381431 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.87■■□□□ 1.25
SGCB-201ENST00000381431 UPF2Q9HAU5 1272 aaKnown RBP22.86■■□□□ 1.25
SGCB-201ENST00000381431 HSP90AA1P07900 732 aaKnown RBP22.86■■□□□ 1.25
SGCB-201ENST00000381431 CARMIL1Q5VZK9 1371 aa22.86■■□□□ 1.25
SGCB-201ENST00000381431 VPS8Q8N3P4 1428 aa22.85■■□□□ 1.25
SGCB-201ENST00000381431 CARD11Q9BXL7 1154 aa22.85■■□□□ 1.25
SGCB-201ENST00000381431 CUX2O14529 1486 aa22.81■■□□□ 1.24
SGCB-201ENST00000381431 EIF5BO60841 1220 aaKnown RBP22.79■■□□□ 1.24
SGCB-201ENST00000381431 ARXQ96QS3 562 aa22.78■■□□□ 1.24
SGCB-201ENST00000381431 FHAD1B1AJZ9 1412 aa22.72■■□□□ 1.23
SGCB-201ENST00000381431 B4GALNT3Q6L9W6 998 aa22.72■■□□□ 1.23
SGCB-201ENST00000381431 FOXD1Q16676 465 aa22.71■■□□□ 1.23
SGCB-201ENST00000381431 ANP32EQ9BTT0 268 aa22.68■■□□□ 1.22
SGCB-201ENST00000381431 SETD5Q9C0A6 1442 aa22.68■■□□□ 1.22
SGCB-201ENST00000381431 KNSTRNQ9Y448 316 aa22.67■■□□□ 1.22
SGCB-201ENST00000381431 PPP4R2Q9NY27 417 aa22.66■■□□□ 1.22
SGCB-201ENST00000381431 TIMELESSQ9UNS1 1208 aa22.66■■□□□ 1.22
SGCB-201ENST00000381431 RAB3GAP2Q9H2M9 1393 aa22.65■■□□□ 1.22
SGCB-201ENST00000381431 NEUROD2Q15784 382 aa22.65■■□□□ 1.22
SGCB-201ENST00000381431 HSPA5P11021 654 aaKnown RBP22.63■■□□□ 1.21
SGCB-201ENST00000381431 WIZO95785 1651 aa22.63■■□□□ 1.21
SGCB-201ENST00000381431 DCAF11Q8TEB1 546 aa22.62■■□□□ 1.21
SGCB-201ENST00000381431 CC2D1BQ5T0F9 858 aaKnown RBP22.61■■□□□ 1.21
SGCB-201ENST00000381431 RUSC2Q8N2Y8 1516 aa22.57■■□□□ 1.2
SGCB-201ENST00000381431 ANP32BQ92688 251 aaKnown RBP22.57■■□□□ 1.2
SGCB-201ENST00000381431 CCER2I3L3R5 266 aa22.57■■□□□ 1.2
SGCB-201ENST00000381431 TDRD9Q8NDG6 1382 aaKnown RBP22.55■■□□□ 1.2
SGCB-201ENST00000381431 TNNT2P45379 298 aaPredicted RBP22.55■■□□□ 1.2
SGCB-201ENST00000381431 PPP1R15AO75807 674 aaPredicted RBP22.54■■□□□ 1.2
SGCB-201ENST00000381431 CDCA8Q53HL2 280 aa22.53■■□□□ 1.2
SGCB-201ENST00000381431 PPM1GO15355 546 aaPredicted RBP22.52■■□□□ 1.2
SGCB-201ENST00000381431 RGS3P49796 1198 aa22.52■■□□□ 1.2
SGCB-201ENST00000381431 EIF4G1Q04637 1599 aaKnown RBP22.52■■□□□ 1.2
SGCB-201ENST00000381431 PLEKHG5O94827 1062 aa22.52■■□□□ 1.2
SGCB-201ENST00000381431 RAPGEF2Q9Y4G8 1499 aa22.51■■□□□ 1.19
SGCB-201ENST00000381431 PKD2Q13563 968 aa22.5■■□□□ 1.19
SGCB-201ENST00000381431 ARHGAP35Q9NRY4 1499 aa22.49■■□□□ 1.19
SGCB-201ENST00000381431 RBM19Q9Y4C8 960 aaKnown RBP22.48■■□□□ 1.19
SGCB-201ENST00000381431 LAS1LQ9Y4W2 734 aaKnown RBP22.47■■□□□ 1.19
SGCB-201ENST00000381431 MPHOSPH9Q99550 1183 aa22.47■■□□□ 1.19
SGCB-201ENST00000381431 CFAP53Q96M91 514 aa22.46■■□□□ 1.19
SGCB-201ENST00000381431 FRAT1Q92837 279 aaPredicted RBP22.45■■□□□ 1.19
SGCB-201ENST00000381431 DDRGK1Q96HY6 314 aa22.43■■□□□ 1.18
SGCB-201ENST00000381431 TOP2AP11388 1531 aaKnown RBP22.43■■□□□ 1.18
SGCB-201ENST00000381431 MYH16Q9H6N6 1097 aa22.43■■□□□ 1.18
SGCB-201ENST00000381431 L3MBTL2Q969R5 705 aa22.41■■□□□ 1.18
SGCB-201ENST00000381431 TMF1P82094 1093 aa22.39■■□□□ 1.17
SGCB-201ENST00000381431 BECN1Q14457 450 aa22.39■■□□□ 1.17
SGCB-201ENST00000381431 DHX57Q6P158 1386 aaKnown RBP22.38■■□□□ 1.17
SGCB-201ENST00000381431 FHOD3Q2V2M9 1422 aa22.38■■□□□ 1.17
SGCB-201ENST00000381431 NOP58Q9Y2X3 529 aaKnown RBP22.38■■□□□ 1.17
SGCB-201ENST00000381431 FTSJ3Q8IY81 847 aaKnown RBP22.37■■□□□ 1.17
SGCB-201ENST00000381431 C14orf37Q86TY3 774 aa22.36■■□□□ 1.17
SGCB-201ENST00000381431 ZBTB7CA1YPR0 619 aa22.35■■□□□ 1.17
SGCB-201ENST00000381431 ERCC6Q03468 1493 aa22.34■■□□□ 1.17
SGCB-201ENST00000381431 SMARCA2P51531 1590 aa22.34■■□□□ 1.17
SGCB-201ENST00000381431 TSHZ2Q9NRE2 1034 aa22.34■■□□□ 1.17
SGCB-201ENST00000381431 U2SURPO15042 1029 aaKnown RBP22.32■■□□□ 1.16
SGCB-201ENST00000381431 FMN1Q68DA7 1419 aa22.32■■□□□ 1.16
SGCB-201ENST00000381431 POGKQ9P215 609 aa22.3■■□□□ 1.16
SGCB-201ENST00000381431 NUP155O75694 1391 aa22.29■■□□□ 1.16
SGCB-201ENST00000381431 MAPK8IP3Q9UPT6 1336 aa22.29■■□□□ 1.16
SGCB-201ENST00000381431 SAFB2Q14151 953 aaKnown RBP eCLIP22.28■■□□□ 1.16
SGCB-201ENST00000381431 NUDCQ9Y266 331 aa22.27■■□□□ 1.16
SGCB-201ENST00000381431 ATAD2BQ9ULI0 1458 aa22.26■■□□□ 1.15
SGCB-201ENST00000381431 RTN4Q9NQC3 1192 aaKnown RBP22.25■■□□□ 1.15
SGCB-201ENST00000381431 CADPSQ9ULU8 1353 aa22.25■■□□□ 1.15
SGCB-201ENST00000381431 ARID4BQ4LE39 1312 aaPredicted RBP22.21■■□□□ 1.15
SGCB-201ENST00000381431 GGT6Q6P531 493 aa22.2■■□□□ 1.14
SGCB-201ENST00000381431 RCAN3Q9UKA8 241 aa22.2■■□□□ 1.14
SGCB-201ENST00000381431 HNRNPMP52272 730 aaKnown RBP eCLIP22.18■■□□□ 1.14
SGCB-201ENST00000381431 MORC1Q86VD1 984 aa22.17■■□□□ 1.14
SGCB-201ENST00000381431 KTN1Q86UP2 1357 aaKnown RBP22.17■■□□□ 1.14
SGCB-201ENST00000381431 NCLP19338 710 aaKnown RBP22.17■■□□□ 1.14
SGCB-201ENST00000381431 ROCK2O75116 1388 aaKnown RBP22.17■■□□□ 1.14
SGCB-201ENST00000381431 SRPK2P78362 688 aaKnown RBP22.15■■□□□ 1.14
SGCB-201ENST00000381431 PDS5BQ9NTI5 1447 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms