RNA–Protein interactions for RNA: ENST00000381089.7

VCX3A-201, Transcript of variable charge X-linked 3A, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VCX3A, Length 995 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-201ENST00000381089 NPM1P06748 294 aaKnown RBP eCLIP28.17■■■□□ 2.1
VCX3A-201ENST00000381089 KIF13AQ9H1H9 1805 aa28.14■■■□□ 2.1
VCX3A-201ENST00000381089 KIF27Q86VH2 1401 aa28.1■■■□□ 2.09
VCX3A-201ENST00000381089 KIAA0586Q9BVV6 1533 aa28.08■■■□□ 2.08
VCX3A-201ENST00000381089 CUL7Q14999 1698 aa28.07■■■□□ 2.08
VCX3A-201ENST00000381089 IGF1RP08069 1367 aa28.05■■■□□ 2.08
VCX3A-201ENST00000381089 FAM69CQ0P6D2 419 aa28.05■■■□□ 2.08
VCX3A-201ENST00000381089 MAPKBP1O60336 1514 aa28.04■■■□□ 2.08
VCX3A-201ENST00000381089 ABCC10Q5T3U5 1492 aa28.04■■■□□ 2.08
VCX3A-201ENST00000381089 ADCY10Q96PN6 1610 aa27.99■■■□□ 2.07
VCX3A-201ENST00000381089 DIP2BQ9P265 1576 aa27.94■■■□□ 2.06
VCX3A-201ENST00000381089 CARMIL1Q5VZK9 1371 aa27.9■■■□□ 2.06
VCX3A-201ENST00000381089 PTPRGP23470 1445 aa27.87■■■□□ 2.05
VCX3A-201ENST00000381089 CARMIL2Q6F5E8 1435 aa27.86■■■□□ 2.05
VCX3A-201ENST00000381089 TNIKQ9UKE5 1360 aa27.81■■■□□ 2.04
VCX3A-201ENST00000381089 TTBK1Q5TCY1 1321 aaPredicted RBP27.8■■■□□ 2.04
VCX3A-201ENST00000381089 KDM6BO15054 1643 aa27.8■■■□□ 2.04
VCX3A-201ENST00000381089 IQGAP2Q13576 1575 aa27.77■■■□□ 2.04
VCX3A-201ENST00000381089 TSPOAP1O95153 1857 aa27.76■■■□□ 2.04
VCX3A-201ENST00000381089 ABCC2Q92887 1545 aa27.74■■■□□ 2.03
VCX3A-201ENST00000381089 PLB1Q6P1J6 1458 aa27.69■■■□□ 2.02
VCX3A-201ENST00000381089 UHRF1BP1LA0JNW5 1464 aa27.66■■■□□ 2.02
VCX3A-201ENST00000381089 ASXL2Q76L83 1435 aa27.66■■■□□ 2.02
VCX3A-201ENST00000381089 UACAQ9BZF9 1416 aa27.65■■■□□ 2.02
VCX3A-201ENST00000381089 RAPGEF2Q9Y4G8 1499 aa27.64■■■□□ 2.01
VCX3A-201ENST00000381089 GLI2P10070 1586 aa27.61■■■□□ 2.01
VCX3A-201ENST00000381089 DISP1Q96F81 1524 aa27.61■■■□□ 2.01
VCX3A-201ENST00000381089 UGGT2Q9NYU1 1516 aa27.57■■■□□ 2
VCX3A-201ENST00000381089 KDM4FA0A1W2PPD8 638 aa27.55■■■□□ 2
VCX3A-201ENST00000381089 KDM5BQ9UGL1 1544 aa27.52■■■□□ 2
VCX3A-201ENST00000381089 KIAA0556O60303 1618 aa27.51■■□□□ 1.99
VCX3A-201ENST00000381089 PPRC1Q5VV67 1664 aaKnown RBP27.49■■□□□ 1.99
VCX3A-201ENST00000381089 EPRSP07814 1512 aaKnown RBP27.48■■□□□ 1.99
VCX3A-201ENST00000381089 TEX14Q8IWB6 1497 aa27.46■■□□□ 1.99
VCX3A-201ENST00000381089 ZCCHC11Q5TAX3 1644 aaKnown RBP27.46■■□□□ 1.99
VCX3A-201ENST00000381089 MAP3K4Q9Y6R4 1608 aa27.43■■□□□ 1.98
VCX3A-201ENST00000381089 CTTNBP2Q8WZ74 1663 aa27.4■■□□□ 1.98
VCX3A-201ENST00000381089 GOLGA3Q08378 1498 aa27.4■■□□□ 1.98
VCX3A-201ENST00000381089 WDR7Q9Y4E6 1490 aa27.37■■□□□ 1.97
VCX3A-201ENST00000381089 ADGRL1O94910 1474 aa27.32■■□□□ 1.96
VCX3A-201ENST00000381089 COL17A1Q9UMD9 1497 aaPredicted RBP27.32■■□□□ 1.96
VCX3A-201ENST00000381089 FAM9AQ8IZU1 332 aaPredicted RBP27.3■■□□□ 1.96
VCX3A-201ENST00000381089 ABCA8O94911 1581 aa27.25■■□□□ 1.95
VCX3A-201ENST00000381089 PRXQ9BXM0 1461 aa27.25■■□□□ 1.95
VCX3A-201ENST00000381089 CD109Q6YHK3 1445 aa27.24■■□□□ 1.95
VCX3A-201ENST00000381089 CFAP43Q8NDM7 1665 aa27.23■■□□□ 1.95
VCX3A-201ENST00000381089 KCNH8Q96L42 1107 aa27.22■■□□□ 1.95
VCX3A-201ENST00000381089 MAGI3Q5TCQ9 1506 aa27.21■■□□□ 1.95
VCX3A-201ENST00000381089 P3H3Q8IVL6 736 aa27.06■■□□□ 1.92
VCX3A-201ENST00000381089 ARID3CA6NKF2 412 aa27.04■■□□□ 1.92
VCX3A-201ENST00000381089 ATP10BO94823 1461 aa27.03■■□□□ 1.92
VCX3A-201ENST00000381089 CSRNP3Q8WYN3 585 aa27.02■■□□□ 1.92
VCX3A-201ENST00000381089 HECW2Q9P2P5 1572 aa27.01■■□□□ 1.92
VCX3A-201ENST00000381089 ARAP3Q8WWN8 1544 aa27■■□□□ 1.91
VCX3A-201ENST00000381089 PHLDB1Q86UU1 1377 aa26.99■■□□□ 1.91
VCX3A-201ENST00000381089 SAMD9Q5K651 1589 aa26.97■■□□□ 1.91
VCX3A-201ENST00000381089 ILDR1Q86SU0 546 aaPredicted RBP26.96■■□□□ 1.91
VCX3A-201ENST00000381089 ABCA9Q8IUA7 1624 aa26.96■■□□□ 1.91
VCX3A-201ENST00000381089 RAPGEF6Q8TEU7 1601 aa26.95■■□□□ 1.91
VCX3A-201ENST00000381089 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.95■■□□□ 1.9
VCX3A-201ENST00000381089 HNRNPUL2Q1KMD3 747 aaKnown RBP26.95■■□□□ 1.9
VCX3A-201ENST00000381089 KIF21BO75037 1637 aa26.94■■□□□ 1.9
VCX3A-201ENST00000381089 EEA1Q15075 1411 aa26.91■■□□□ 1.9
VCX3A-201ENST00000381089 NEO1Q92859 1461 aa26.88■■□□□ 1.89
VCX3A-201ENST00000381089 RANGAP1P46060 587 aaPredicted RBP26.83■■□□□ 1.89
VCX3A-201ENST00000381089 NUP153P49790 1475 aaKnown RBP26.82■■□□□ 1.88
VCX3A-201ENST00000381089 RAPGEF3O95398 923 aa26.82■■□□□ 1.88
VCX3A-201ENST00000381089 FHOD3Q2V2M9 1422 aa26.8■■□□□ 1.88
VCX3A-201ENST00000381089 PLEKHD1A6NEE1 506 aa26.78■■□□□ 1.88
VCX3A-201ENST00000381089 ARID4BQ4LE39 1312 aaPredicted RBP26.74■■□□□ 1.87
VCX3A-201ENST00000381089 ADAMTSL3P82987 1691 aa26.73■■□□□ 1.87
VCX3A-201ENST00000381089 EFCAB5A4FU69 1503 aa26.73■■□□□ 1.87
VCX3A-201ENST00000381089 PTPRMP28827 1452 aa26.73■■□□□ 1.87
VCX3A-201ENST00000381089 FRMPD1Q5SYB0 1578 aa26.71■■□□□ 1.87
VCX3A-201ENST00000381089 CFAP74Q9C0B2 1584 aa26.7■■□□□ 1.86
VCX3A-201ENST00000381089 DENND4BO75064 1496 aaPredicted RBP26.68■■□□□ 1.86
VCX3A-201ENST00000381089 BCORL1Q5H9F3 1711 aa26.68■■□□□ 1.86
VCX3A-201ENST00000381089 FANCAO15360 1455 aa26.66■■□□□ 1.86
VCX3A-201ENST00000381089 AKNAQ7Z591 1439 aa26.65■■□□□ 1.86
VCX3A-201ENST00000381089 ARHGEF40Q8TER5 1519 aa26.65■■□□□ 1.86
VCX3A-201ENST00000381089 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.62■■□□□ 1.85
VCX3A-201ENST00000381089 MADDQ8WXG6 1647 aa26.61■■□□□ 1.85
VCX3A-201ENST00000381089 RICTORQ6R327 1708 aa26.61■■□□□ 1.85
VCX3A-201ENST00000381089 POGZQ7Z3K3 1410 aa26.57■■□□□ 1.84
VCX3A-201ENST00000381089 TTC37Q6PGP7 1564 aa26.57■■□□□ 1.84
VCX3A-201ENST00000381089 ZMYM4Q5VZL5 1548 aa26.55■■□□□ 1.84
VCX3A-201ENST00000381089 PCF11O94913 1555 aaKnown RBP26.54■■□□□ 1.84
VCX3A-201ENST00000381089 MAGI2Q86UL8 1455 aa26.53■■□□□ 1.84
VCX3A-201ENST00000381089 CDK13Q14004 1512 aaKnown RBP26.53■■□□□ 1.84
VCX3A-201ENST00000381089 UBTFP17480 764 aaKnown RBP26.52■■□□□ 1.84
VCX3A-201ENST00000381089 FMN1Q68DA7 1419 aa26.52■■□□□ 1.84
VCX3A-201ENST00000381089 ZFYVE16Q7Z3T8 1539 aa26.52■■□□□ 1.84
VCX3A-201ENST00000381089 RIMS1Q86UR5 1692 aaKnown RBP26.52■■□□□ 1.84
VCX3A-201ENST00000381089 FBXO41Q8TF61 875 aa26.51■■□□□ 1.83
VCX3A-201ENST00000381089 ATP1B4Q9UN42 357 aaPredicted RBP26.5■■□□□ 1.83
VCX3A-201ENST00000381089 CDK11AQ9UQ88 783 aaPredicted RBP26.49■■□□□ 1.83
VCX3A-201ENST00000381089 PLCH2O75038 1416 aa26.48■■□□□ 1.83
VCX3A-201ENST00000381089 HECW1Q76N89 1606 aa26.48■■□□□ 1.83
VCX3A-201ENST00000381089 LMTK3Q96Q04 1460 aa26.48■■□□□ 1.83
VCX3A-201ENST00000381089 SCAPERQ9BY12 1400 aa26.46■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms