RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 DDX10Q13206 875 aaKnown RBP15.1■□□□□ 0.01
VPS13A-205ENST00000376636 AMER1Q5JTC6 1135 aaPredicted RBP15.09■□□□□ 0.01
VPS13A-205ENST00000376636 CHGAP10645 457 aaKnown RBP15.09■□□□□ 0.01
VPS13A-205ENST00000376636 FTSJ3Q8IY81 847 aaKnown RBP15.08■□□□□ 0.01
VPS13A-205ENST00000376636 CHMP4BQ9H444 224 aaKnown RBP15.06■□□□□ 0
VPS13A-205ENST00000376636 NOC3LQ8WTT2 800 aaKnown RBP15.06■□□□□ 0
VPS13A-205ENST00000376636 USP35Q9P2H5 1018 aa15.06■□□□□ 0
VPS13A-205ENST00000376636 SCAF1Q9H7N4 1312 aaKnown RBP15.06■□□□□ 0
VPS13A-205ENST00000376636 GOLGA6L4A6NEF3 574 aa15.04■□□□□ -0
VPS13A-205ENST00000376636 A0A0G2JS52 829 aa15.04■□□□□ -0
VPS13A-205ENST00000376636 HSP90AB1P08238 724 aaKnown RBP15.04■□□□□ -0
VPS13A-205ENST00000376636 DRC7Q8IY82 874 aa15.03■□□□□ -0
VPS13A-205ENST00000376636 TPRNQ4KMQ1 711 aa15.03■□□□□ -0
VPS13A-205ENST00000376636 FGD1P98174 961 aa15.02■□□□□ -0
VPS13A-205ENST00000376636 RTN4Q9NQC3 1192 aaKnown RBP15.02■□□□□ -0
VPS13A-205ENST00000376636 NOP58Q9Y2X3 529 aaKnown RBP15.01□□□□□ -0.01
VPS13A-205ENST00000376636 GOLGA6L1Q8N7Z2 621 aa15.01□□□□□ -0.01
VPS13A-205ENST00000376636 PNNQ9H307 717 aaKnown RBP15.01□□□□□ -0.01
VPS13A-205ENST00000376636 PTMSP20962 102 aa15□□□□□ -0.01
VPS13A-205ENST00000376636 CLSTN1O94985 981 aa14.99□□□□□ -0.01
VPS13A-205ENST00000376636 CALRP27797 417 aaKnown RBP14.98□□□□□ -0.01
VPS13A-205ENST00000376636 CFAP44Q96MT7 982 aa14.97□□□□□ -0.01
VPS13A-205ENST00000376636 IRX6P78412 446 aaPredicted RBP14.97□□□□□ -0.01
VPS13A-205ENST00000376636 CFAP53Q96M91 514 aa14.97□□□□□ -0.01
VPS13A-205ENST00000376636 SETQ01105 290 aaPredicted RBP14.96□□□□□ -0.01
VPS13A-205ENST00000376636 HSCBQ8IWL3 235 aa14.96□□□□□ -0.02
VPS13A-205ENST00000376636 KCNJ4P48050 445 aa14.94□□□□□ -0.02
VPS13A-205ENST00000376636 NCBP3Q53F19 620 aaKnown RBP14.93□□□□□ -0.02
VPS13A-205ENST00000376636 MCCP23508 829 aa14.93□□□□□ -0.02
VPS13A-205ENST00000376636 MS4A1P11836 297 aa14.93□□□□□ -0.02
VPS13A-205ENST00000376636 NPM1P06748 294 aaKnown RBP eCLIP14.93□□□□□ -0.02
VPS13A-205ENST00000376636 A0A0U1RQG5 324 aaPredicted RBP14.93□□□□□ -0.02
VPS13A-205ENST00000376636 ARID3CA6NKF2 412 aa14.92□□□□□ -0.02
VPS13A-205ENST00000376636 GOLGA2Q08379 1002 aa14.92□□□□□ -0.02
VPS13A-205ENST00000376636 LAS1LQ9Y4W2 734 aaKnown RBP14.92□□□□□ -0.02
VPS13A-205ENST00000376636 DCAF1Q9Y4B6 1507 aa14.91□□□□□ -0.02
VPS13A-205ENST00000376636 CDCA8Q53HL2 280 aa14.89□□□□□ -0.03
VPS13A-205ENST00000376636 P3H3Q8IVL6 736 aa14.89□□□□□ -0.03
VPS13A-205ENST00000376636 NAP1L2Q9ULW6 460 aaPredicted RBP14.89□□□□□ -0.03
VPS13A-205ENST00000376636 EIF4G2P78344 907 aaKnown RBP eCLIP14.88□□□□□ -0.03
VPS13A-205ENST00000376636 GNL2Q13823 731 aaKnown RBP14.88□□□□□ -0.03
VPS13A-205ENST00000376636 NPHP1O15259 732 aa14.88□□□□□ -0.03
VPS13A-205ENST00000376636 OS9Q13438 667 aaPredicted RBP14.88□□□□□ -0.03
VPS13A-205ENST00000376636 C14orf37Q86TY3 774 aa14.87□□□□□ -0.03
VPS13A-205ENST00000376636 SYAP1Q96A49 352 aaPredicted RBP14.87□□□□□ -0.03
VPS13A-205ENST00000376636 TPM4P67936 248 aa14.85□□□□□ -0.03
VPS13A-205ENST00000376636 PLPPR3Q6T4P5 718 aa14.85□□□□□ -0.03
VPS13A-205ENST00000376636 KNSTRNQ9Y448 316 aa14.85□□□□□ -0.03
VPS13A-205ENST00000376636 HTATSF1O43719 755 aaKnown RBP14.84□□□□□ -0.03
VPS13A-205ENST00000376636 TAOK2Q9UL54 1235 aa14.84□□□□□ -0.03
VPS13A-205ENST00000376636 MAPK8IP3Q9UPT6 1336 aa14.84□□□□□ -0.03
VPS13A-205ENST00000376636 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.84□□□□□ -0.033e-6■□□□□ 10.8
VPS13A-205ENST00000376636 PRM3Q9NNZ6 103 aa14.83□□□□□ -0.03
VPS13A-205ENST00000376636 ZBTB7CA1YPR0 619 aa14.83□□□□□ -0.04
VPS13A-205ENST00000376636 CCDC34Q96HJ3 373 aa14.83□□□□□ -0.04
VPS13A-205ENST00000376636 GBP4Q96PP9 640 aa14.83□□□□□ -0.04
VPS13A-205ENST00000376636 KDM2AQ9Y2K7 1162 aa14.82□□□□□ -0.04
VPS13A-205ENST00000376636 PPP4R2Q9NY27 417 aa14.81□□□□□ -0.04
VPS13A-205ENST00000376636 HAP1P54257 671 aaPredicted RBP14.8□□□□□ -0.04
VPS13A-205ENST00000376636 RGS3P49796 1198 aa14.79□□□□□ -0.04
VPS13A-205ENST00000376636 TSPY4P0CV99 314 aa14.79□□□□□ -0.04
VPS13A-205ENST00000376636 TSPY10P0CW01 314 aa14.79□□□□□ -0.04
VPS13A-205ENST00000376636 ARID4BQ4LE39 1312 aaPredicted RBP14.79□□□□□ -0.04
VPS13A-205ENST00000376636 PPP1R15AO75807 674 aaPredicted RBP14.78□□□□□ -0.04
VPS13A-205ENST00000376636 DEKP35659 375 aaKnown RBP14.78□□□□□ -0.04
VPS13A-205ENST00000376636 CCDC180Q9P1Z9 1646 aa14.78□□□□□ -0.04
VPS13A-205ENST00000376636 NUDCQ9Y266 331 aa14.77□□□□□ -0.05
VPS13A-205ENST00000376636 CSRNP3Q8WYN3 585 aa14.76□□□□□ -0.05
VPS13A-205ENST00000376636 MIER1Q8N108 512 aa14.76□□□□□ -0.05
VPS13A-205ENST00000376636 PHF14O94880 888 aa14.75□□□□□ -0.05
VPS13A-205ENST00000376636 SUPT16HQ9Y5B9 1047 aaKnown RBP14.74□□□□□ -0.05
VPS13A-205ENST00000376636 MTUS2Q5JR59 1369 aa14.73□□□□□ -0.05
VPS13A-205ENST00000376636 CSPP1Q1MSJ5 1256 aa14.73□□□□□ -0.05
VPS13A-205ENST00000376636 KIAA1211Q6ZU35 1233 aa14.73□□□□□ -0.05
VPS13A-205ENST00000376636 CEP89Q96ST8 783 aa14.71□□□□□ -0.05
VPS13A-205ENST00000376636 ARID3AQ99856 593 aa14.71□□□□□ -0.05
VPS13A-205ENST00000376636 FRAT1Q92837 279 aaPredicted RBP14.7□□□□□ -0.06
VPS13A-205ENST00000376636 GPS2Q13227 327 aa14.69□□□□□ -0.06
VPS13A-205ENST00000376636 TPM3P06753 285 aa14.69□□□□□ -0.06
VPS13A-205ENST00000376636 HSP90AA2PQ14568 343 aaPredicted RBP14.69□□□□□ -0.06
VPS13A-205ENST00000376636 CHIC2Q9UKJ5 165 aa14.69□□□□□ -0.06
VPS13A-205ENST00000376636 CCDC70Q6NSX1 233 aa14.67□□□□□ -0.06
VPS13A-205ENST00000376636 ISY1Q9ULR0 285 aaKnown RBP14.67□□□□□ -0.06
VPS13A-205ENST00000376636 RSPH6AQ9H0K4 717 aa14.65□□□□□ -0.06
VPS13A-205ENST00000376636 GOLGA6L3A6NEY3 463 aa14.65□□□□□ -0.06
VPS13A-205ENST00000376636 RRP12Q5JTH9 1297 aaKnown RBP14.63□□□□□ -0.07
VPS13A-205ENST00000376636 PLEKHG5O94827 1062 aa14.63□□□□□ -0.07
VPS13A-205ENST00000376636 RSF1Q96T23 1441 aaPredicted RBP14.62□□□□□ -0.07
VPS13A-205ENST00000376636 NEUROD2Q15784 382 aa14.61□□□□□ -0.07
VPS13A-205ENST00000376636 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.6□□□□□ -0.07
VPS13A-205ENST00000376636 SPRYD3Q8NCJ5 442 aa14.6□□□□□ -0.07
VPS13A-205ENST00000376636 TSR1Q2NL82 804 aaKnown RBP14.6□□□□□ -0.07
VPS13A-205ENST00000376636 GPATCH3Q96I76 525 aa14.59□□□□□ -0.07
VPS13A-205ENST00000376636 TEX35Q5T0J7 233 aa14.59□□□□□ -0.07
VPS13A-205ENST00000376636 GZF1Q9H116 711 aaPredicted RBP14.59□□□□□ -0.07
VPS13A-205ENST00000376636 NOM1Q5C9Z4 860 aaKnown RBP14.58□□□□□ -0.08
VPS13A-205ENST00000376636 KIF3AQ9Y496 699 aa14.57□□□□□ -0.08
VPS13A-205ENST00000376636 IPO8O15397 1037 aaKnown RBP14.56□□□□□ -0.08
VPS13A-205ENST00000376636 HIRIP3Q9BW71 556 aaPredicted RBP14.56□□□□□ -0.08
VPS13A-205ENST00000376636 RASSF8Q8NHQ8 419 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms