RNA–Protein interactions for RNA: ENST00000375851.6

C9orf47-203, Transcript of chromosome 9 open reading frame 47, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene C9orf47, Length 4,837 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf47-203ENST00000375851 KCNH8Q96L42 1107 aa18.48■□□□□ 0.55
C9orf47-203ENST00000375851 EIF4G2P78344 907 aaKnown RBP eCLIP18.47■□□□□ 0.55
C9orf47-203ENST00000375851 MRS2Q9HD23 443 aa18.46■□□□□ 0.55
C9orf47-203ENST00000375851 SOGA1O94964 1423 aa18.45■□□□□ 0.54
C9orf47-203ENST00000375851 MROH2BQ7Z745 1585 aa18.44■□□□□ 0.54
C9orf47-203ENST00000375851 PLPPR3Q6T4P5 718 aa18.43■□□□□ 0.54
C9orf47-203ENST00000375851 CFDP1Q9UEE9 299 aaPredicted RBP18.42■□□□□ 0.54
C9orf47-203ENST00000375851 ANP32AP39687 249 aaKnown RBP18.41■□□□□ 0.54
C9orf47-203ENST00000375851 CARMIL1Q5VZK9 1371 aa18.36■□□□□ 0.53
C9orf47-203ENST00000375851 NPM2Q86SE8 214 aaKnown RBP18.36■□□□□ 0.53
C9orf47-203ENST00000375851 CCDC88BA6NC98 1476 aa18.36■□□□□ 0.53
C9orf47-203ENST00000375851 RGL3Q3MIN7 710 aa18.34■□□□□ 0.53
C9orf47-203ENST00000375851 CUX2O14529 1486 aa18.34■□□□□ 0.53
C9orf47-203ENST00000375851 WDR43Q15061 677 aaKnown RBP eCLIP18.33■□□□□ 0.52
C9orf47-203ENST00000375851 SIN3AQ96ST3 1273 aa18.3■□□□□ 0.52
C9orf47-203ENST00000375851 CCDC136Q96JN2 1154 aa18.3■□□□□ 0.52
C9orf47-203ENST00000375851 FHAD1B1AJZ9 1412 aa18.28■□□□□ 0.52
C9orf47-203ENST00000375851 CCNB3Q8WWL7 1395 aa18.28■□□□□ 0.52
C9orf47-203ENST00000375851 ERCC6Q03468 1493 aa18.26■□□□□ 0.51
C9orf47-203ENST00000375851 SCAF1Q9H7N4 1312 aaKnown RBP18.26■□□□□ 0.51
C9orf47-203ENST00000375851 ABCC8Q09428 1581 aa18.26■□□□□ 0.51
C9orf47-203ENST00000375851 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.23■□□□□ 0.51
C9orf47-203ENST00000375851 IRX6P78412 446 aaPredicted RBP18.23■□□□□ 0.51
C9orf47-203ENST00000375851 SENP3Q9H4L4 574 aaPredicted RBP18.23■□□□□ 0.51
C9orf47-203ENST00000375851 VPS8Q8N3P4 1428 aa18.2■□□□□ 0.5
C9orf47-203ENST00000375851 SMARCA2P51531 1590 aa18.19■□□□□ 0.5
C9orf47-203ENST00000375851 CARD11Q9BXL7 1154 aa18.19■□□□□ 0.5
C9orf47-203ENST00000375851 KANK4Q5T7N3 995 aaPredicted RBP18.17■□□□□ 0.5
C9orf47-203ENST00000375851 UPF2Q9HAU5 1272 aaKnown RBP18.16■□□□□ 0.5
C9orf47-203ENST00000375851 PPP1R15AO75807 674 aaPredicted RBP18.15■□□□□ 0.5
C9orf47-203ENST00000375851 EIF4G1Q04637 1599 aaKnown RBP18.14■□□□□ 0.49
C9orf47-203ENST00000375851 WIZO95785 1651 aa18.12■□□□□ 0.49
C9orf47-203ENST00000375851 CDCA8Q53HL2 280 aa18.11■□□□□ 0.49
C9orf47-203ENST00000375851 TDRD9Q8NDG6 1382 aaKnown RBP18.11■□□□□ 0.49
C9orf47-203ENST00000375851 SENP3-EIF4A1A0A087X0R7 540 aa18.11■□□□□ 0.49
C9orf47-203ENST00000375851 HSP90AA1P07900 732 aaKnown RBP18.1■□□□□ 0.49
C9orf47-203ENST00000375851 TOP2AP11388 1531 aaKnown RBP18.09■□□□□ 0.49
C9orf47-203ENST00000375851 KNSTRNQ9Y448 316 aa18.09■□□□□ 0.49
C9orf47-203ENST00000375851 TIMELESSQ9UNS1 1208 aa18.07■□□□□ 0.48
C9orf47-203ENST00000375851 PDS5BQ9NTI5 1447 aa18.07■□□□□ 0.48
C9orf47-203ENST00000375851 SETD5Q9C0A6 1442 aa18.05■□□□□ 0.48
C9orf47-203ENST00000375851 SUPT16HQ9Y5B9 1047 aaKnown RBP18.02■□□□□ 0.48
C9orf47-203ENST00000375851 ARHGAP35Q9NRY4 1499 aa18.02■□□□□ 0.47
C9orf47-203ENST00000375851 CADPSQ9ULU8 1353 aa18.02■□□□□ 0.47
C9orf47-203ENST00000375851 DCAF11Q8TEB1 546 aa18.01■□□□□ 0.47
C9orf47-203ENST00000375851 ARID4BQ4LE39 1312 aaPredicted RBP18.01■□□□□ 0.47
C9orf47-203ENST00000375851 CFAP53Q96M91 514 aa18.01■□□□□ 0.47
C9orf47-203ENST00000375851 ATAD2BQ9ULI0 1458 aa17.99■□□□□ 0.47
C9orf47-203ENST00000375851 FMN1Q68DA7 1419 aa17.97■□□□□ 0.47
C9orf47-203ENST00000375851 C14orf37Q86TY3 774 aa17.97■□□□□ 0.47
C9orf47-203ENST00000375851 PLEKHG5O94827 1062 aa17.96■□□□□ 0.46
C9orf47-203ENST00000375851 CARMIL2Q6F5E8 1435 aa17.94■□□□□ 0.46
C9orf47-203ENST00000375851 PPM1GO15355 546 aaPredicted RBP17.94■□□□□ 0.46
C9orf47-203ENST00000375851 PKD2Q13563 968 aa17.94■□□□□ 0.46
C9orf47-203ENST00000375851 RAB3GAP2Q9H2M9 1393 aa17.94■□□□□ 0.46
C9orf47-203ENST00000375851 FOXD1Q16676 465 aa17.93■□□□□ 0.46
C9orf47-203ENST00000375851 ZBTB7CA1YPR0 619 aa17.92■□□□□ 0.46
C9orf47-203ENST00000375851 MYH16Q9H6N6 1097 aa17.92■□□□□ 0.46
C9orf47-203ENST00000375851 POGKQ9P215 609 aa17.92■□□□□ 0.46
C9orf47-203ENST00000375851 NEUROD2Q15784 382 aa17.92■□□□□ 0.46
C9orf47-203ENST00000375851 NBR1Q14596 966 aa17.91■□□□□ 0.46
C9orf47-203ENST00000375851 RAPGEF2Q9Y4G8 1499 aa17.91■□□□□ 0.46
C9orf47-203ENST00000375851 CC2D1BQ5T0F9 858 aaKnown RBP17.91■□□□□ 0.46
C9orf47-203ENST00000375851 HSPA5P11021 654 aaKnown RBP17.89■□□□□ 0.46
C9orf47-203ENST00000375851 TMF1P82094 1093 aa17.89■□□□□ 0.46
C9orf47-203ENST00000375851 SMARCA4P51532 1647 aa17.89■□□□□ 0.45
C9orf47-203ENST00000375851 ANP32BQ92688 251 aaKnown RBP17.88■□□□□ 0.45
C9orf47-203ENST00000375851 MPHOSPH9Q99550 1183 aa17.88■□□□□ 0.45
C9orf47-203ENST00000375851 TNNT2P45379 298 aaPredicted RBP17.87■□□□□ 0.45
C9orf47-203ENST00000375851 FHOD3Q2V2M9 1422 aa17.87■□□□□ 0.45
C9orf47-203ENST00000375851 KANK1Q14678 1352 aa17.87■□□□□ 0.45
C9orf47-203ENST00000375851 RUSC2Q8N2Y8 1516 aa17.86■□□□□ 0.45
C9orf47-203ENST00000375851 NUDCQ9Y266 331 aa17.85■□□□□ 0.45
C9orf47-203ENST00000375851 CCER2I3L3R5 266 aa17.83■□□□□ 0.45
C9orf47-203ENST00000375851 GGT6Q6P531 493 aa17.83■□□□□ 0.44
C9orf47-203ENST00000375851 MAPK8IP3Q9UPT6 1336 aa17.83■□□□□ 0.44
C9orf47-203ENST00000375851 EFCAB2Q5VUJ9 269 aa17.82■□□□□ 0.44
C9orf47-203ENST00000375851 NUP155O75694 1391 aa17.82■□□□□ 0.44
C9orf47-203ENST00000375851 PPP4R2Q9NY27 417 aa17.82■□□□□ 0.44
C9orf47-203ENST00000375851 MLECQ14165 292 aa17.79■□□□□ 0.44
C9orf47-203ENST00000375851 A0A0G2JS52 829 aa17.79■□□□□ 0.44
C9orf47-203ENST00000375851 ANKRD30AQ9BXX3 1397 aa17.79■□□□□ 0.44
C9orf47-203ENST00000375851 FTSJ3Q8IY81 847 aaKnown RBP17.79■□□□□ 0.44
C9orf47-203ENST00000375851 JPH4Q96JJ6 628 aa17.77■□□□□ 0.44
C9orf47-203ENST00000375851 LAS1LQ9Y4W2 734 aaKnown RBP17.77■□□□□ 0.44
C9orf47-203ENST00000375851 U2SURPO15042 1029 aaKnown RBP17.77■□□□□ 0.44
C9orf47-203ENST00000375851 FRAT1Q92837 279 aaPredicted RBP17.75■□□□□ 0.43
C9orf47-203ENST00000375851 L3MBTL2Q969R5 705 aa17.75■□□□□ 0.43
C9orf47-203ENST00000375851 HNRNPMP52272 730 aaKnown RBP eCLIP17.74■□□□□ 0.43
C9orf47-203ENST00000375851 SAFB2Q14151 953 aaKnown RBP eCLIP17.74■□□□□ 0.43
C9orf47-203ENST00000375851 ARXQ96QS3 562 aa17.74■□□□□ 0.43
C9orf47-203ENST00000375851 DDRGK1Q96HY6 314 aa17.74■□□□□ 0.43
C9orf47-203ENST00000375851 FANCD2Q9BXW9 1451 aa17.73■□□□□ 0.43
C9orf47-203ENST00000375851 SRPK2P78362 688 aaKnown RBP17.73■□□□□ 0.43
C9orf47-203ENST00000375851 BECN1Q14457 450 aa17.73■□□□□ 0.43
C9orf47-203ENST00000375851 B4GALNT3Q6L9W6 998 aa17.73■□□□□ 0.43
C9orf47-203ENST00000375851 LMOD2Q6P5Q4 547 aa17.72■□□□□ 0.43
C9orf47-203ENST00000375851 MORC1Q86VD1 984 aa17.7■□□□□ 0.42
C9orf47-203ENST00000375851 RGS3P49796 1198 aa17.7■□□□□ 0.42
C9orf47-203ENST00000375851 HAP1P54257 671 aaPredicted RBP17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms