RNA–Protein interactions for RNA: ENST00000372189.7

RAPGEF1-201, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RAPGEF1, Length 6,085 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-201ENST00000372189 BCL11AQ9H165 835 aa17.95■□□□□ 0.46
RAPGEF1-201ENST00000372189 CFDP1Q9UEE9 299 aaPredicted RBP17.95■□□□□ 0.46
RAPGEF1-201ENST00000372189 PDS5BQ9NTI5 1447 aa17.94■□□□□ 0.46
RAPGEF1-201ENST00000372189 CEP162Q5TB80 1403 aa17.93■□□□□ 0.46
RAPGEF1-201ENST00000372189 NPM2Q86SE8 214 aaKnown RBP17.93■□□□□ 0.46
RAPGEF1-201ENST00000372189 EIF4G1Q04637 1599 aaKnown RBP17.91■□□□□ 0.46
RAPGEF1-201ENST00000372189 SCAF1Q9H7N4 1312 aaKnown RBP17.91■□□□□ 0.46
RAPGEF1-201ENST00000372189 CUX2O14529 1486 aa17.9■□□□□ 0.46
RAPGEF1-201ENST00000372189 TRHP20396 242 aaPredicted RBP17.87■□□□□ 0.45
RAPGEF1-201ENST00000372189 NCLP19338 710 aaKnown RBP17.86■□□□□ 0.45
RAPGEF1-201ENST00000372189 SENP3Q9H4L4 574 aaPredicted RBP17.86■□□□□ 0.45
RAPGEF1-201ENST00000372189 CARMIL1Q5VZK9 1371 aa17.85■□□□□ 0.45
RAPGEF1-201ENST00000372189 C14orf37Q86TY3 774 aa17.85■□□□□ 0.45
RAPGEF1-201ENST00000372189 MROH2BQ7Z745 1585 aa17.85■□□□□ 0.45
RAPGEF1-201ENST00000372189 TNIKQ9UKE5 1360 aa17.84■□□□□ 0.45
RAPGEF1-201ENST00000372189 CCDC88BA6NC98 1476 aa17.82■□□□□ 0.44
RAPGEF1-201ENST00000372189 ANP32BQ92688 251 aaKnown RBP17.81■□□□□ 0.44
RAPGEF1-201ENST00000372189 HNRNPUQ00839 825 aaKnown RBP eCLIP17.79■□□□□ 0.44
RAPGEF1-201ENST00000372189 DDX10Q13206 875 aaKnown RBP17.78■□□□□ 0.44
RAPGEF1-201ENST00000372189 TRIM44Q96DX7 344 aaPredicted RBP17.77■□□□□ 0.44
RAPGEF1-201ENST00000372189 MYO15BQ96JP2 1530 aa17.76■□□□□ 0.43
RAPGEF1-201ENST00000372189 SOGA1O94964 1423 aa17.76■□□□□ 0.43
RAPGEF1-201ENST00000372189 RGL3Q3MIN7 710 aa17.76■□□□□ 0.43
RAPGEF1-201ENST00000372189 CCNB3Q8WWL7 1395 aa17.76■□□□□ 0.43
RAPGEF1-201ENST00000372189 ZBTB7CA1YPR0 619 aa17.75■□□□□ 0.43
RAPGEF1-201ENST00000372189 FHAD1B1AJZ9 1412 aa17.75■□□□□ 0.43
RAPGEF1-201ENST00000372189 WDR43Q15061 677 aaKnown RBP eCLIP17.74■□□□□ 0.43
RAPGEF1-201ENST00000372189 FAM9BQ8IZU0 186 aa17.74■□□□□ 0.43
RAPGEF1-201ENST00000372189 TMC1Q8TDI8 760 aa17.74■□□□□ 0.43
RAPGEF1-201ENST00000372189 UPF2Q9HAU5 1272 aaKnown RBP17.72■□□□□ 0.43
RAPGEF1-201ENST00000372189 CARMIL2Q6F5E8 1435 aa17.72■□□□□ 0.43
RAPGEF1-201ENST00000372189 PLEKHG5O94827 1062 aa17.72■□□□□ 0.43
RAPGEF1-201ENST00000372189 A0A0G2JS52 829 aa17.69■□□□□ 0.42
RAPGEF1-201ENST00000372189 EIF4G2P78344 907 aaKnown RBP eCLIP17.69■□□□□ 0.429e-7■■■■■ 46.8
RAPGEF1-201ENST00000372189 NBR1Q14596 966 aa17.68■□□□□ 0.42
RAPGEF1-201ENST00000372189 TDRD9Q8NDG6 1382 aaKnown RBP17.68■□□□□ 0.42
RAPGEF1-201ENST00000372189 SALL2Q9Y467 1007 aaPredicted RBP17.68■□□□□ 0.42
RAPGEF1-201ENST00000372189 TOP2AP11388 1531 aaKnown RBP17.68■□□□□ 0.42
RAPGEF1-201ENST00000372189 HAP1P54257 671 aaPredicted RBP17.67■□□□□ 0.42
RAPGEF1-201ENST00000372189 CADPSQ9ULU8 1353 aa17.67■□□□□ 0.42
RAPGEF1-201ENST00000372189 CALRP27797 417 aaKnown RBP17.67■□□□□ 0.42
RAPGEF1-201ENST00000372189 CCDC136Q96JN2 1154 aa17.67■□□□□ 0.42
RAPGEF1-201ENST00000372189 HSP90AA1P07900 732 aaKnown RBP17.67■□□□□ 0.42
RAPGEF1-201ENST00000372189 AMER1Q5JTC6 1135 aaPredicted RBP17.66■□□□□ 0.42
RAPGEF1-201ENST00000372189 KANK1Q14678 1352 aa17.64■□□□□ 0.41
RAPGEF1-201ENST00000372189 ABCC8Q09428 1581 aa17.63■□□□□ 0.41
RAPGEF1-201ENST00000372189 WIZO95785 1651 aa17.63■□□□□ 0.41
RAPGEF1-201ENST00000372189 MIER1Q8N108 512 aa17.62■□□□□ 0.41
RAPGEF1-201ENST00000372189 MLECQ14165 292 aa17.62■□□□□ 0.41
RAPGEF1-201ENST00000372189 CDCA8Q53HL2 280 aa17.61■□□□□ 0.41
RAPGEF1-201ENST00000372189 HIRIP3Q9BW71 556 aaPredicted RBP17.59■□□□□ 0.41
RAPGEF1-201ENST00000372189 MRS2Q9HD23 443 aa17.59■□□□□ 0.41
RAPGEF1-201ENST00000372189 ATAD2BQ9ULI0 1458 aa17.59■□□□□ 0.41
RAPGEF1-201ENST00000372189 POGKQ9P215 609 aa17.58■□□□□ 0.4
RAPGEF1-201ENST00000372189 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.57■□□□□ 0.4
RAPGEF1-201ENST00000372189 CARD11Q9BXL7 1154 aa17.56■□□□□ 0.4
RAPGEF1-201ENST00000372189 HDGFP51858 240 aaKnown RBP17.55■□□□□ 0.4
RAPGEF1-201ENST00000372189 PODXL2Q9NZ53 605 aa17.55■□□□□ 0.4
RAPGEF1-201ENST00000372189 SMARCA4P51532 1647 aa17.54■□□□□ 0.4
RAPGEF1-201ENST00000372189 PTMSP20962 102 aa17.54■□□□□ 0.4
RAPGEF1-201ENST00000372189 CFAP53Q96M91 514 aa17.52■□□□□ 0.39
RAPGEF1-201ENST00000372189 ANP32EQ9BTT0 268 aa17.51■□□□□ 0.39
RAPGEF1-201ENST00000372189 KNSTRNQ9Y448 316 aa17.51■□□□□ 0.39
RAPGEF1-201ENST00000372189 LMOD2Q6P5Q4 547 aa17.5■□□□□ 0.39
RAPGEF1-201ENST00000372189 ARHGAP35Q9NRY4 1499 aa17.49■□□□□ 0.39
RAPGEF1-201ENST00000372189 GGT6Q6P531 493 aa17.48■□□□□ 0.39
RAPGEF1-201ENST00000372189 FMN1Q68DA7 1419 aa17.48■□□□□ 0.39
RAPGEF1-201ENST00000372189 PPM1GO15355 546 aaPredicted RBP17.47■□□□□ 0.39
RAPGEF1-201ENST00000372189 EFCAB2Q5VUJ9 269 aa17.47■□□□□ 0.39
RAPGEF1-201ENST00000372189 FANCD2Q9BXW9 1451 aa17.47■□□□□ 0.39
RAPGEF1-201ENST00000372189 DDRGK1Q96HY6 314 aa17.46■□□□□ 0.39
RAPGEF1-201ENST00000372189 IRX6P78412 446 aaPredicted RBP17.45■□□□□ 0.38
RAPGEF1-201ENST00000372189 RAPGEF2Q9Y4G8 1499 aa17.43■□□□□ 0.38
RAPGEF1-201ENST00000372189 MYH16Q9H6N6 1097 aa17.42■□□□□ 0.38
RAPGEF1-201ENST00000372189 ARXQ96QS3 562 aa17.41■□□□□ 0.38
RAPGEF1-201ENST00000372189 VPS8Q8N3P4 1428 aa17.41■□□□□ 0.38
RAPGEF1-201ENST00000372189 DCAF11Q8TEB1 546 aa17.4■□□□□ 0.38
RAPGEF1-201ENST00000372189 JPH4Q96JJ6 628 aa17.4■□□□□ 0.38
RAPGEF1-201ENST00000372189 SIN3AQ96ST3 1273 aa17.39■□□□□ 0.37
RAPGEF1-201ENST00000372189 BECN1Q14457 450 aa17.37■□□□□ 0.37
RAPGEF1-201ENST00000372189 NUDCQ9Y266 331 aa17.35■□□□□ 0.37
RAPGEF1-201ENST00000372189 OSCARQ8IYS5 282 aa17.34■□□□□ 0.37
RAPGEF1-201ENST00000372189 ERICH6BQ5W0A0 696 aa17.33■□□□□ 0.37
RAPGEF1-201ENST00000372189 MAPK8IP3Q9UPT6 1336 aa17.33■□□□□ 0.37
RAPGEF1-201ENST00000372189 NAP1L5Q96NT1 182 aaPredicted RBP17.33■□□□□ 0.37
RAPGEF1-201ENST00000372189 TMF1P82094 1093 aa17.33■□□□□ 0.36
RAPGEF1-201ENST00000372189 ANKRD30AQ9BXX3 1397 aa17.32■□□□□ 0.36
RAPGEF1-201ENST00000372189 SRPK2P78362 688 aaKnown RBP17.32■□□□□ 0.36
RAPGEF1-201ENST00000372189 PKD2Q13563 968 aa17.32■□□□□ 0.36
RAPGEF1-201ENST00000372189 KANK4Q5T7N3 995 aaPredicted RBP17.31■□□□□ 0.36
RAPGEF1-201ENST00000372189 FHOD3Q2V2M9 1422 aa17.31■□□□□ 0.36
RAPGEF1-201ENST00000372189 SETD5Q9C0A6 1442 aa17.31■□□□□ 0.36
RAPGEF1-201ENST00000372189 A0A0U1RQG5 324 aaPredicted RBP17.3■□□□□ 0.36
RAPGEF1-201ENST00000372189 HNRNPMP52272 730 aaKnown RBP eCLIP17.28■□□□□ 0.365e-6■■■□□ 17.8
RAPGEF1-201ENST00000372189 CCDC18Q5T9S5 1454 aa17.28■□□□□ 0.36
RAPGEF1-201ENST00000372189 SAFB2Q14151 953 aaKnown RBP eCLIP17.28■□□□□ 0.36
RAPGEF1-201ENST00000372189 KIF3BO15066 747 aa17.28■□□□□ 0.36
RAPGEF1-201ENST00000372189 TNNT3P45378 269 aaPredicted RBP17.28■□□□□ 0.36
RAPGEF1-201ENST00000372189 CYB5RLQ6IPT4 315 aa17.28■□□□□ 0.36
RAPGEF1-201ENST00000372189 APPP05067 770 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms