RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 PPM1GO15355 546 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-208ENST00000367256 PABPN1Q86U42 306 aaKnown RBP eCLIP9.61□□□□□ -0.87
SYNE1-208ENST00000367256 IRX6P78412 446 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-208ENST00000367256 NAP1L5Q96NT1 182 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-208ENST00000367256 EEA1Q15075 1411 aa9.59□□□□□ -0.87
SYNE1-208ENST00000367256 A0A0G2JS52 829 aa9.58□□□□□ -0.88
SYNE1-208ENST00000367256 GOLGA6L6A8MZA4 724 aa9.58□□□□□ -0.88
SYNE1-208ENST00000367256 TPRNQ4KMQ1 711 aa9.56□□□□□ -0.88
SYNE1-208ENST00000367256 ZCCHC6Q5VYS8 1495 aaKnown RBP9.55□□□□□ -0.88
SYNE1-208ENST00000367256 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.54□□□□□ -0.88
SYNE1-208ENST00000367256 TULP1O00294 542 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-208ENST00000367256 FTSJ3Q8IY81 847 aaKnown RBP9.52□□□□□ -0.89
SYNE1-208ENST00000367256 ZBTB7CA1YPR0 619 aa9.51□□□□□ -0.89
SYNE1-208ENST00000367256 MIER1Q8N108 512 aa9.51□□□□□ -0.89
SYNE1-208ENST00000367256 CHAF1AQ13111 956 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-208ENST00000367256 CLIP1P30622 1438 aa9.5□□□□□ -0.89
SYNE1-208ENST00000367256 C14orf37Q86TY3 774 aa9.49□□□□□ -0.89
SYNE1-208ENST00000367256 KDM2AQ9Y2K7 1162 aa9.49□□□□□ -0.89
SYNE1-208ENST00000367256 RTN4Q9NQC3 1192 aaKnown RBP9.49□□□□□ -0.89
SYNE1-208ENST00000367256 EIF4G2P78344 907 aaKnown RBP eCLIP9.49□□□□□ -0.89
SYNE1-208ENST00000367256 LAS1LQ9Y4W2 734 aaKnown RBP9.48□□□□□ -0.89
SYNE1-208ENST00000367256 CHIC2Q9UKJ5 165 aa9.48□□□□□ -0.89
SYNE1-208ENST00000367256 NRDCO43847 1150 aa9.48□□□□□ -0.89
SYNE1-208ENST00000367256 NOP58Q9Y2X3 529 aaKnown RBP9.47□□□□□ -0.89
SYNE1-208ENST00000367256 PPP4R2Q9NY27 417 aa9.47□□□□□ -0.89
SYNE1-208ENST00000367256 GOLGA3Q08378 1498 aa9.47□□□□□ -0.89
SYNE1-208ENST00000367256 RSF1Q96T23 1441 aaPredicted RBP9.46□□□□□ -0.89
SYNE1-208ENST00000367256 CHMP4BQ9H444 224 aaKnown RBP9.45□□□□□ -0.9
SYNE1-208ENST00000367256 L1TD1Q5T7N2 865 aaKnown RBP9.45□□□□□ -0.9
SYNE1-208ENST00000367256 MTUS2Q5JR59 1369 aa9.45□□□□□ -0.9
SYNE1-208ENST00000367256 PPP1R15AO75807 674 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-208ENST00000367256 PLCB2Q00722 1185 aa9.44□□□□□ -0.9
SYNE1-208ENST00000367256 CFAP53Q96M91 514 aa9.44□□□□□ -0.9
SYNE1-208ENST00000367256 HSP90AB1P08238 724 aaKnown RBP9.44□□□□□ -0.9
SYNE1-208ENST00000367256 CDCA8Q53HL2 280 aa9.44□□□□□ -0.9
SYNE1-208ENST00000367256 NPM1P06748 294 aaKnown RBP eCLIP9.44□□□□□ -0.9
SYNE1-208ENST00000367256 PLEKHG5O94827 1062 aa9.43□□□□□ -0.9
SYNE1-208ENST00000367256 CLSTN1O94985 981 aa9.43□□□□□ -0.9
SYNE1-208ENST00000367256 AMER1Q5JTC6 1135 aaPredicted RBP9.43□□□□□ -0.9
SYNE1-208ENST00000367256 TAOK2Q9UL54 1235 aa9.43□□□□□ -0.9
SYNE1-208ENST00000367256 FGD1P98174 961 aa9.42□□□□□ -0.9
SYNE1-208ENST00000367256 MSNP26038 577 aaKnown RBP9.42□□□□□ -0.9
SYNE1-208ENST00000367256 MS4A1P11836 297 aa9.41□□□□□ -0.9
SYNE1-208ENST00000367256 SENP3Q9H4L4 574 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-208ENST00000367256 PTMSP20962 102 aa9.41□□□□□ -0.9
SYNE1-208ENST00000367256 KNSTRNQ9Y448 316 aa9.41□□□□□ -0.9
SYNE1-208ENST00000367256 CEP162Q5TB80 1403 aa9.41□□□□□ -0.9
SYNE1-208ENST00000367256 HIRIP3Q9BW71 556 aaPredicted RBP9.4□□□□□ -0.9
SYNE1-208ENST00000367256 RGS3P49796 1198 aa9.4□□□□□ -0.91
SYNE1-208ENST00000367256 DRC7Q8IY82 874 aa9.4□□□□□ -0.91
SYNE1-208ENST00000367256 CFAP44Q96MT7 982 aa9.4□□□□□ -0.91
SYNE1-208ENST00000367256 OS9Q13438 667 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-208ENST00000367256 HSCBQ8IWL3 235 aa9.39□□□□□ -0.91
SYNE1-208ENST00000367256 NAP1L2Q9ULW6 460 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-208ENST00000367256 GOLGA6L4A6NEF3 574 aa9.38□□□□□ -0.91
SYNE1-208ENST00000367256 MAPK8IP3Q9UPT6 1336 aa9.38□□□□□ -0.91
SYNE1-208ENST00000367256 HAP1P54257 671 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-208ENST00000367256 NPHP1O15259 732 aa9.38□□□□□ -0.91
SYNE1-208ENST00000367256 KCNJ4P48050 445 aa9.38□□□□□ -0.91
SYNE1-208ENST00000367256 TSPY4P0CV99 314 aa9.38□□□□□ -0.91
SYNE1-208ENST00000367256 TSPY10P0CW01 314 aa9.38□□□□□ -0.91
SYNE1-208ENST00000367256 TIMELESSQ9UNS1 1208 aa9.37□□□□□ -0.91
SYNE1-208ENST00000367256 CEP164Q9UPV0 1460 aa9.37□□□□□ -0.91
SYNE1-208ENST00000367256 NOC3LQ8WTT2 800 aaKnown RBP9.37□□□□□ -0.91
SYNE1-208ENST00000367256 KIAA2012Q0VF49 1180 aa9.36□□□□□ -0.91
SYNE1-208ENST00000367256 SUPT16HQ9Y5B9 1047 aaKnown RBP9.36□□□□□ -0.91
SYNE1-208ENST00000367256 CCER2I3L3R5 266 aa9.35□□□□□ -0.91
SYNE1-208ENST00000367256 GOLGA2Q08379 1002 aa9.35□□□□□ -0.91
SYNE1-208ENST00000367256 TNIKQ9UKE5 1360 aa9.35□□□□□ -0.91
SYNE1-208ENST00000367256 NCBP3Q53F19 620 aaKnown RBP9.35□□□□□ -0.91
SYNE1-208ENST00000367256 ARID4BQ4LE39 1312 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-208ENST00000367256 SENP3-EIF4A1A0A087X0R7 540 aa9.34□□□□□ -0.91
SYNE1-208ENST00000367256 RRP7BPQ9NSQ0 103 aa9.34□□□□□ -0.91
SYNE1-208ENST00000367256 GNL2Q13823 731 aaKnown RBP9.34□□□□□ -0.91
SYNE1-208ENST00000367256 FRAT1Q92837 279 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-208ENST00000367256 MCCP23508 829 aa9.33□□□□□ -0.92
SYNE1-208ENST00000367256 DEKP35659 375 aaKnown RBP9.32□□□□□ -0.92
SYNE1-208ENST00000367256 PNNQ9H307 717 aaKnown RBP9.32□□□□□ -0.92
SYNE1-208ENST00000367256 NEUROD2Q15784 382 aa9.32□□□□□ -0.92
SYNE1-208ENST00000367256 ARID3AQ99856 593 aa9.31□□□□□ -0.92
SYNE1-208ENST00000367256 MYO15BQ96JP2 1530 aa9.31□□□□□ -0.92
SYNE1-208ENST00000367256 SPRYD3Q8NCJ5 442 aa9.29□□□□□ -0.92
SYNE1-208ENST00000367256 NUDCQ9Y266 331 aa9.29□□□□□ -0.92
SYNE1-208ENST00000367256 FHAD1B1AJZ9 1412 aa9.29□□□□□ -0.92
SYNE1-208ENST00000367256 RB1CC1Q8TDY2 1594 aa9.28□□□□□ -0.92
SYNE1-208ENST00000367256 TNNT3P45378 269 aaPredicted RBP9.28□□□□□ -0.92
SYNE1-208ENST00000367256 CARD11Q9BXL7 1154 aa9.28□□□□□ -0.92
SYNE1-208ENST00000367256 GBP4Q96PP9 640 aa9.27□□□□□ -0.93
SYNE1-208ENST00000367256 KIF27Q86VH2 1401 aa9.27□□□□□ -0.93
SYNE1-208ENST00000367256 HMGB1P09429 215 aaKnown RBP9.27□□□□□ -0.93
SYNE1-208ENST00000367256 GOLGA6L1Q8N7Z2 621 aa9.26□□□□□ -0.93
SYNE1-208ENST00000367256 ISY1Q9ULR0 285 aaKnown RBP9.26□□□□□ -0.93
SYNE1-208ENST00000367256 RGL3Q3MIN7 710 aa9.26□□□□□ -0.93
SYNE1-208ENST00000367256 CC2D1BQ5T0F9 858 aaKnown RBP9.26□□□□□ -0.93
SYNE1-208ENST00000367256 KAT6BQ8WYB5 2073 aa9.26□□□□□ -0.93
SYNE1-208ENST00000367256 USP35Q9P2H5 1018 aa9.25□□□□□ -0.93
SYNE1-208ENST00000367256 A0A0U1RQG5 324 aaPredicted RBP9.25□□□□□ -0.93
SYNE1-208ENST00000367256 TCERG1O14776 1098 aaKnown RBP9.25□□□□□ -0.93
SYNE1-208ENST00000367256 RBM19Q9Y4C8 960 aaKnown RBP9.25□□□□□ -0.93
SYNE1-208ENST00000367256 SYAP1Q96A49 352 aaPredicted RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms